"Pathway" "Pathway.source" "Annotation.score" "p.value.score" "No.of.genes" "p.value.genes" "IN THREE DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "ORGAN DATA SET" "quantDE" "0" "maxDE" "0" "ORGAN DATA SET" "STRESS DATA SET" "quantDE" "1.554214" "maxDE" "4.705495" "STRESS DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "44.5" "0.000277049453262487" "10" "0.0770297488176086" "Fructose and mannose metabolism" "KEGG" "32" "2.18294694149966e-17" "5" "0.000395808331133341" "Glucosinolate Metabolism" "LitPath" "30" "1.05984326888319e-18" "3" "0.00105024579566756" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "28" "0.00862924911474275" "5" "0.126126473977675" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "28" "7.46035058100977e-11" "10" "6.54710143368504e-06" "Branched-chain amino acids from aspartate" "BioPath" "24" "4.11218702832499e-17" "3" "0.00151603683848777" "leucine biosynthesis" "AraCyc" "24" "1.51238721416625e-30" "3" "6.56570260675689e-06" "Pyruvate metabolism" "KEGG" "24" "7.33276377867758e-07" "3" "0.0686579497375883" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "22" "9.74210549244065e-06" "3" "0.039947911733278" "Valine, leucine and isoleucine biosynthesis" "KEGG" "22" "4.84290938978432e-13" "3" "0.00407138940788958" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "21" "0.000139040053816791" "4" "0.024970293381762" "glucosinolate biosynthesis" "TAIR-GO" "20" "7.07958824204048e-24" "2" "7.58197319349912e-05" "Benzoate degradation via CoA ligation" "KEGG" "18" "8.79680355199762e-05" "2" "0.301200986924724" "Inositol phosphate metabolism" "KEGG" "18" "0.000308349077173557" "2" "0.348974384809524" "Methane metabolism" "KEGG" "18" "5.65999300480702e-08" "9" "6.86159520652849e-06" "Nicotinate and nicotinamide metabolism" "KEGG" "18" "1.29190885475802e-05" "2" "0.25975599845274" "Phenylalanine metabolism" "KEGG" "18" "6.94850328203555e-06" "9" "1.31522668844993e-05" "Prostaglandin and leukotriene metabolism" "KEGG" "18" "3.01800991643466e-11" "9" "8.66026450582157e-07" "cellulose biosynthesis" "BioPath" "16" "2.43983834138003e-06" "2" "0.0649352404895564" "hemicellulose biosynthesis" "BioPath" "16" "1.25129775494743e-11" "2" "0.00390492790352952" "Glycan Biosynthesis and Metabolism" "KEGG" "16" "0.000133180840935724" "2" "0.153793418779139" "Glycerolipid metabolism" "KEGG" "16" "1.19303054008777e-06" "2" "0.0332001342961786" "transport " "FunCat" "14" "8.92688990279254e-25" "3" "0" "transport facilitation" "FunCat" "14" "0" "3" "0" "Biosynthesis of prenyl diphosphates" "BioPath" "12" "0.00522117846256196" "2" "0.0614820751350086" "GDP-carbohydrate biosynthesis" "BioPath" "12" "5.01120998918046e-11" "2" "0.000914092452439963" "colanic acid building blocks biosynthesis" "AraCyc" "12" "1.44452919893642e-05" "2" "0.0105859653195956" "polyprenyl diphosphate biosynthesis" "LitPath" "12" "1.54980977511809e-12" "2" "0.000808903008879163" "secondary metabolism" "FunCat" "11" "0.000939138428017449" "3" "0.0158181830433390" "Glucosyltransferases for benzoic acids" "BioPath" "10" "2.02859946548435e-05" "1" "0.0284579530121935" "sterol biosynthesis" "BioPath" "10" "0.00120323624119819" "1" "0.100024299408067" "Transporters required for plastid development" "BioPath" "10" "0" "1" "0" "dolichol biosynthesis" "TAIR-GO" "10" "4.80736871486936e-18" "1" "0.000391327913002698" "iron ion homeostasis" "TAIR-GO" "10" "0" "1" "0" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "1.86440858414657e-08" "1" "0.00947301004978125" "sterol biosynthesis" "TAIR-GO" "10" "1.34415316068874e-06" "1" "0.0219547876515870" "dTDP-rhamnose biosynthesis" "AraCyc" "10" "1.67666395487357e-05" "1" "0.0484511253933626" "galactose degradation I" "AraCyc" "10" "2.66645684813561e-14" "1" "0.00135559537456488" "glucose conversion" "AraCyc" "10" "7.50813663913864e-06" "1" "0.0424958521199851" "glucosinolate biosynthesis from homomethionine" "AraCyc" "10" "3.60123292568857e-11" "1" "0.000652248284763433" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "2.50041236175717e-12" "1" "0.000393384149565995" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "lactose degradation IV" "AraCyc" "10" "2.66645684813561e-14" "1" "0.00135559537456488" "UDP-glucose conversion" "AraCyc" "10" "5.87211493804136e-06" "1" "0.040577415569165" "C-compound and carbohydrate utilization " "FunCat" "10" "6.65273324088115e-18" "1" "0.000262714885322377" "cation transport (Na, K, Ca , NH4, etc.) " "FunCat" "10" "2.16829207265651e-14" "1" "0.000779876814360967" "heavy metal ion transport (Cu, Fe, etc.)" "FunCat" "10" "2.16545391799332e-16" "1" "0.000262714885322377" "ion transport " "FunCat" "10" "0" "1" "0" "isoprenoid biosynthesis " "FunCat" "10" "0.0272813737540825" "1" "0.263559640039637" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "10" "0.0112632703611687" "1" "0.214744048537275" "transported compounds (substrates)" "FunCat" "10" "0" "1" "0" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.000527373866365632" "1" "0.100287809494255" "Fluorene degradation" "KEGG" "10" "6.21349363882729e-06" "1" "0.0402702800630690" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "2.5098243141714e-05" "1" "0.0507360717571906" "brassinosteroid biosynthesis" "LitPath" "10" "0.00283272504521189" "1" "0.103505781209292" "sterol and brassinosteroid biosynthesis" "LitPath" "10" "0.000261576542908659" "1" "0.0568415281310142" "adenosine salvage" "TAIR-GO" "9" "6.49058162469505e-16" "1" "0.000131380591918899" "N-terminal protein myristoylation" "TAIR-GO" "9" "2.50400697634038e-08" "1" "0.00677560369762283" "phosphorylation" "TAIR-GO" "9" "0" "1" "0" "protein amino acid phosphorylation" "TAIR-GO" "9" "2.25882609935125e-11" "1" "0.00128588208132578" "trehalose biosynthesis" "TAIR-GO" "9" "6.49058162469505e-16" "1" "0.000131380591918899" "acetate fermentation" "AraCyc" "9" "0.00398391439271898" "1" "0.107716422835127" "fructose degradation (anaerobic)" "AraCyc" "9" "0.00262717296828172" "1" "0.0946996482589266" "glycolysis IV" "AraCyc" "9" "0.0027729407024874" "1" "0.0972636679170065" "mannitol degradation" "AraCyc" "9" "5.59802311883279e-07" "1" "0.0176484086018625" "sorbitol degradation" "AraCyc" "9" "8.17037778435789e-07" "1" "0.0190211888914863" "sorbitol fermentation" "AraCyc" "9" "0.00418662046331409" "1" "0.102451666528497" "trehalose biosynthesis I" "AraCyc" "9" "0.0108744777564341" "1" "0.129469637965612" "trehalose biosynthesis II" "AraCyc" "9" "0.00104913167668513" "1" "0.072612901969822" "trehalose biosynthesis III" "AraCyc" "9" "1.77070357523933e-05" "1" "0.0281500622476948" "energy" "FunCat" "9" "4.7088245700981e-14" "1" "0.000779876814360967" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "9" "1.20813890237292e-18" "1" "0" "nucleotide metabolism" "FunCat" "9" "0" "1" "0" "purine nucleotide metabolism" "FunCat" "9" "1.69928013346403e-05" "1" "0.0452437444991896" "toxin catabolism" "TAIR-GO" "8" "1.54694917796335e-05" "4" "0.000124912311431407" "atty acid elongation -- unsaturated" "AraCyc" "8" "4.22949218738653e-06" "1" "0.0103748905745772" "fatty acid elongation -- saturated" "AraCyc" "8" "8.25195405592019e-06" "1" "0.0114684419830654" "fatty acid elongation -- unsaturated" "AraCyc" "8" "3.54151088119777e-06" "1" "0.0093307494670584" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "5.79070988130843e-05" "2" "0.00163656397760661" "detoxification" "FunCat" "8" "0" "4" "0" "Fatty acid biosynthesis (path 1)" "KEGG" "8" "0.000207842742228630" "1" "0.0620580581277409" "Synthesis of fatty acids in plastids" "AcylLipid" "8" "4.52968608716548e-06" "1" "0.0509905240783853" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "8" "0.0265309156848337" "2" "0.044144277270024" "terpenoid metabolism" "LitPath" "8" "0.0273926492075915" "2" "0.0479017987948161" "calcium-mediated signaling" "TAIR-GO" "7" "6.1321623308715e-12" "1" "0.000391327913002698" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "4.60719770834439e-07" "1" "0.00352406410122643" "Phosphatidylinositol signaling system" "KEGG" "7" "0.0248089896014025" "1" "0.166073733634161" "Signal Transduction" "KEGG" "7" "0.0303699887561407" "1" "0.173797776094297" "triterpene biosynthesis" "LitPath" "7" "0.000222786193604715" "1" "0.0263535028070816" "HORMONE DATA SET" "quantDE" "0" "maxDE" "4.8268697" "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "14.5" "0.00252475620084462" "3" "0.0700737611759161" "core phenylpropanoid metabolism" "BioPath" "12" "4.50410835168471e-10" "2" "0.00115994604480691" "Phenylpropanoid Metabolism" "BioPath" "12" "0.000412701191946839" "2" "0.0473453584842353" "Lipid signaling" "AcylLipid" "11" "2.20241859177637e-07" "2" "0.0152941731243811" "cellulose biosynthesis" "BioPath" "10" "1.57004938910955e-08" "1" "0.0195031082348489" "hemicellulose biosynthesis" "BioPath" "10" "2.81549642896135e-12" "1" "0.00256142136512881" "Fructose and mannose metabolism" "KEGG" "10" "2.01084751178513e-12" "1" "0.00133555344341080" "Glycan Biosynthesis and Metabolism" "KEGG" "10" "1.06203686050128e-11" "1" "0.00249805412988987" "Glycerolipid metabolism" "KEGG" "10" "2.02842315616607e-13" "1" "0.00068591675295094" "lipases pathway" "AraCyc" "9" "2.94995556310217e-22" "1" "4.07777739300288e-05" "degradation " "FunCat" "9" "2.68940154070223e-13" "1" "0.000659400090112874" "intracellular signalling" "FunCat" "9" "7.3834862434977e-11" "1" "0.00295699797137996" "lipid, fatty acid and isoprenoid degradation" "FunCat" "9" "7.92237514883778e-13" "1" "0.000711692945410933" "second messenger mediated signal transduction" "FunCat" "9" "1.37613860345288e-21" "1" "1.23471766448462e-05" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "8" "8.55853173239252e-08" "2" "0.0026700615327679" "terpenoid metabolism" "LitPath" "8" "8.98854569239523e-08" "2" "0.00293287103393711" "MUTANT DATA SET" "quantDE" "1.734723e-18" "maxDE" "1.708700339" "MUTANT DATA SET" "Phenylpropanoid pathway" "LitPath" "32" "2.21871549018829e-15" "6" "0.000109688737297683" "Phenylpropanoid Metabolism" "BioPath" "22" "1.30114813653907e-06" "4" "0.0094001329664592" "lignin biosynthesis" "AraCyc" "20" "3.27088395019216e-20" "4" "2.29772689224370e-06" "Nucleotide sugars metabolism" "KEGG" "16" "4.00717588631128e-23" "3" "1.87039273616883e-06" "biogenesis of chloroplast" "FunCat" "14" "2.64823943023196e-07" "2" "0.0134736515815051" "core phenylpropanoid metabolism" "BioPath" "12" "3.04781916676073e-07" "2" "0.00490519025745788" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "10" "4.27406579647098e-05" "2" "0.00861834517905173" "Chlorophyll biosynthesis and breakdown" "BioPath" "10" "7.70365713212536e-06" "1" "0.0272090548384422" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "10" "2.65367034144359e-07" "1" "0.0227379091980599" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "10" "0.0117391535546796" "1" "0.138658795119391" "ethylene biosynthesis" "TAIR-GO" "10" "4.88757338385278e-15" "1" "0.000643700662803448" "gibberellic acid catabolism" "TAIR-GO" "10" "7.35843443255855e-16" "1" "0.000231779371209205" "lignin biosynthesis" "TAIR-GO" "10" "8.76855216894771e-13" "1" "0.000825363732292112" "phenylpropanoid metabolism" "TAIR-GO" "10" "1.12409914588061e-14" "1" "0.000346723385423400" "biosynthesis of proto- and siroheme" "AraCyc" "10" "6.2785985320844e-09" "1" "0.0190965011160424" "aerobic respiration" "FunCat" "10" "6.51306228788762e-10" "1" "0.0065771137446064" "respiration" "FunCat" "10" "6.51306228788762e-10" "1" "0.0065771137446064" "secondary metabolism" "FunCat" "10" "3.75444661656209e-06" "1" "0.0882400549463979" "Diterpenoid biosynthesis" "KEGG" "10" "1.06924540870030e-11" "1" "0.00160497254995721" "Porphyrin and chlorophyll metabolism" "KEGG" "10" "2.72897305069261e-09" "1" "0.0081503652776413" "Propanoate metabolism" "KEGG" "10" "2.34518000199102e-10" "1" "0.0100081980786757" "chlorophyll and phytochromobilin metabolism" "LitPath" "10" "0.00809462912979114" "1" "0.111502700596013" "Gibberellin metabolism" "LitPath" "10" "1.78290365347585e-05" "1" "0.0336218561732317" "giberelin catabolism" "LitPath" "10" "3.64754415094676e-15" "1" "0.000286730877005487" "phytochromobilin biosynthesis" "LitPath" "10" "8.68905568714186e-09" "1" "0.00573074109038615" "arabinose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "9" "3.54782542862185e-10" "1" "0.00342282699043244" "IAA conjugate biosynthesis II" "AraCyc" "9" "0" "1" "0" "Galactose metabolism" "KEGG" "9" "1.76603208735756e-08" "1" "0.0106656101755489" "Translation factors" "KEGG" "8" "2.35294406142248e-05" "3" "0.000821015802214204" "response to auxin stimulus" "TAIR-GO" "7" "1.09573198320679e-09" "1" "0.000825363732292112"