"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "cellulose biosynthesis" "BioPath" "66" "10" "" "" "fatty acid metabolism" "TAIR-GO" "41" "9" "" "" "ORGAN DATA SET" "quantDE" "0" "maxDE" "8.7076817" "ORGAN DATA SET" "Miscellaneous acyl lipid metabolism" "AcylLipid" "42" "6.43946939568258e-13" "15" "7.66920193463558e-05" "Cell Wall Carbohydrate Metabolism" "BioPath" "26" "2.31650797826906e-06" "6" "0.073785288957402" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "25" "1.13762949947208e-08" "7" "0.00439095546500400" "sexual reproduction" "TAIR-GO" "20" "0" "5" "0" "pectin metabolism" "BioPath" "18" "1.07529805221056e-10" "5" "0.00549001997386913" "fatty acid metabolism" "TAIR-GO" "17" "8.13007809403813e-17" "3" "6.98556932939474e-05" "Biosynthesis of prenyl diphosphates" "BioPath" "14" "6.11259389771495e-09" "3" "0.00131993463913823" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "14" "7.14096905311731e-07" "3" "0.00498726586047404" "Phenylpropanoid pathway" "LitPath" "11" "0.000774828822319412" "5" "0.00107579530967592" "gibberellic acid catabolism" "TAIR-GO" "10" "5.30694550911216e-15" "1" "0.000872685460777355" "Diterpenoid biosynthesis" "KEGG" "10" "6.10824036527742e-14" "1" "0.00066683761635743" "Gibberellin metabolism" "LitPath" "10" "1.08202998633207e-07" "1" "0.0336218561732317" "giberelin catabolism" "LitPath" "10" "1.07379993642296e-17" "1" "0.000286730877005487" "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" "10" "3.40978814306143e-08" "1" "0.0264756546718478" "lignin biosynthesis" "AraCyc" "9" "1.22434138222733e-09" "4" "5.80612396815715e-06" "cellulose biosynthesis" "BioPath" "8" "5.92446061547875e-05" "1" "0.0907673720719375" "hemicellulose biosynthesis" "BioPath" "8" "7.89147896915974e-08" "1" "0.0134557910047097" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "8" "9.93325134895580e-16" "1" "0.000264856619182462" "cuticle biosynthesis" "TAIR-GO" "8" "5.37265432139821e-10" "2" "0.000160249721638413" "long-chain fatty acid metabolism" "TAIR-GO" "8" "2.87895192946550e-08" "2" "0.000480340474391858" "very-long-chain fatty acid metabolism" "TAIR-GO" "8" "4.75984465102851e-09" "2" "0.000325375825427191" "biogenesis of cell wall" "FunCat" "8" "5.32643882506083e-06" "2" "0.0170107769342125" "Fructose and mannose metabolism" "KEGG" "8" "8.05808267299788e-08" "1" "0.00980833815293757" "Glycan Biosynthesis and Metabolism" "KEGG" "8" "2.96420105400292e-07" "1" "0.0179252534137463" "Glycerolipid metabolism" "KEGG" "8" "1.32295917484059e-08" "1" "0.00512767989248018" "Pentose and glucuronate interconversions" "KEGG" "8" "2.83628337986649e-12" "2" "1.29404189620311e-05" "suberin biosynthesis" "AraCyc" "7" "2.4118274240904e-09" "3" "3.44994727542738e-06" "STRESS DATA SET" "quantDE" "0" "maxDE" "3.577349" "STRESS DATA SET" "cytokinin biosynthesis" "TAIR-GO" "7" "1.9608730471372e-21" "1" "3.11574526289879e-06" "trans-zeatin biosynthesis" "AraCyc" "7" "3.59960982881124e-19" "1" "2.10367392117023e-05" "RNA modification " "FunCat" "7" "3.52759158450863e-18" "1" "5.76942493256985e-06" "RNA synthesis " "FunCat" "7" "7.5422851398488e-10" "1" "0.00196096974034388" "transcription" "FunCat" "7" "1.32291297334438e-12" "1" "0.00051697834560897" "tRNA modification " "FunCat" "7" "0" "1" "0" "tRNA synthesis " "FunCat" "7" "2.05317056119339e-14" "1" "0.000120381646617331" "HORMONE DATA SET" "quantDE" "0" "maxDE" "0.4150375" "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "132" "2.13888547750118e-34" "41" "4.07511481872848e-10" "pectin metabolism" "BioPath" "72" "6.38808484867516e-36" "29" "1.78702176403718e-12" "Ribosome" "KEGG" "44" "0.0303273656063217" "8" "0.415828324876378" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "32" "5.45512273979698e-13" "5" "0.00614458025342074" "terpenoid metabolism" "LitPath" "32" "6.4469916758271e-13" "5" "0.00724284589855754" "Fructose and mannose metabolism" "KEGG" "30" "4.86016102103074e-13" "5" "0.0030489930824883" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "27" "8.42625770298877e-10" "9" "0.000356261932761625" "cellulose biosynthesis" "BioPath" "26" "3.46389255118413e-09" "5" "0.0181183800122646" "nucleotide metabolism" "FunCat" "24" "0" "6" "0" "Miscellaneous acyl lipid metabolism" "AcylLipid" "22" "0.0278984634838701" "9" "0.159554235238830" "(deoxy)ribose phosphate degradation" "AraCyc" "20" "1.25754282934379e-20" "4" "4.23413879031689e-06" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "20" "2.42431675675475e-11" "2" "0.0242037183777829" "pyrimidine nucleotide metabolism" "FunCat" "20" "2.00178738077456e-14" "4" "0.000556201569635714" "Glycolysis / Gluconeogenesis" "KEGG" "20" "0.00138827671032559" "5" "0.034763462662979" "Nucleotide Metabolism" "KEGG" "20" "0.000275182952627659" "4" "0.0932143416584375" "Pyrimidine metabolism" "KEGG" "20" "4.27950916361768e-09" "4" "0.00814306169441357" "Flavonoid and anthocyanin metabolism" "BioPath" "19" "1.30665165562581e-06" "5" "0.0439128204709383" "biogenesis of cell wall" "FunCat" "18" "0.00213441075537122" "7" "0.00548356505643175" "transport " "FunCat" "18" "0" "5" "0" "Starch and sucrose metabolism" "KEGG" "18" "0.00970209681424816" "6" "0.00924026403211805" "hemicellulose biosynthesis" "BioPath" "16" "1.97830287387802e-08" "2" "0.0372578838670798" "acetate fermentation" "AraCyc" "16" "0.000201965226988816" "4" "0.0299154086337013" "fructose degradation (anaerobic)" "AraCyc" "16" "9.99444640227846e-05" "4" "0.022302629057196" "glycerol degradation II" "AraCyc" "16" "2.61986767055807e-06" "4" "0.00557876508303786" "glycolysis IV" "AraCyc" "16" "0.000109505770473885" "4" "0.0237110064680969" "non-phosphorylated glucose degradation" "AraCyc" "16" "7.28207741996425e-11" "4" "0.00119861661081867" "sorbitol fermentation" "AraCyc" "16" "0.000219597966381463" "4" "0.0266977141057538" "Glycan Biosynthesis and Metabolism" "KEGG" "16" "0.00159708541173055" "2" "0.325074823231176" "Glycerolipid metabolism" "KEGG" "16" "2.17999892396628e-05" "2" "0.0861338275515694" "gibberellin biosynthesis" "AraCyc" "14" "5.59081021273222e-10" "2" "0.00309575901518353" "C-compound, carbohydrate catabolism" "FunCat" "14" "0.000120448138378998" "3" "0.0972298242727056" "plant / fungal specific systemic sensing and response " "FunCat" "14" "1.03449282726061e-05" "2" "0.0455026274970183" "plant hormonal regulation" "FunCat" "14" "1.03449282726061e-05" "2" "0.0455026274970183" "transport facilitation" "FunCat" "14" "0" "4" "0" "Galactose metabolism" "KEGG" "14" "6.06850410235486e-05" "3" "0.0158566980097210" "Ligand-Receptor Interaction" "KEGG" "14" "3.21525832252105e-06" "6" "0.00101280101342074" "Nitrogen metabolism" "KEGG" "13" "0.00403536806773648" "2" "0.080089072141303" "abscisic acid biosynthesis" "AraCyc" "12" "2.35260016501488e-14" "2" "0.000160588302955609" "mixed acid fermentation" "AraCyc" "12" "8.08296783242126e-05" "3" "0.0118304848472733" "TCA cycle -- aerobic respiration" "AraCyc" "12" "0.00148291890631463" "2" "0.119869594130759" "TCA cycle variation IV" "AraCyc" "12" "0.00120788219720764" "2" "0.108741904386140" "TCA cycle variation VII" "AraCyc" "12" "0.0480541371049231" "2" "0.269655847130723" "TCA cycle variation VIII" "AraCyc" "12" "0.00315372024506968" "2" "0.131401081840642" "Citrate cycle (TCA cycle)" "KEGG" "12" "0.00391034836206034" "2" "0.140719327768636" "Ion channels" "KEGG" "12" "4.92348845627869e-05" "5" "0.00421129294545302" "Purine metabolism" "KEGG" "12" "0.0468836005745011" "3" "0.122635343623459" "abscisic acid biosynthesis" "LitPath" "12" "1.48327091993329e-07" "2" "0.0080414950332102" "Carotenoid and abscisic acid metabolism" "LitPath" "12" "0.0184984206545877" "2" "0.113658468058932" "flavonoid biosynthesis" "AraCyc" "11" "1.97782110128043e-05" "3" "0.00464151332739169" "C-compound, carbohydrate anabolism" "FunCat" "11" "2.38945769422757e-05" "3" "0.0076585097491645" "transcription" "FunCat" "11" "1.73265413558225e-07" "3" "0.00233819861483387" "trehalose metabolism" "BioPath" "10" "8.3661887243579e-08" "2" "0.0211071570553158" "gibberellic acid biosynthesis" "TAIR-GO" "10" "6.58027416318992e-08" "1" "0.00996934063077562" "gibberellic acid mediated signaling" "TAIR-GO" "10" "3.03891339126091e-11" "1" "0.00191136492483288" "glucosinolate biosynthesis" "TAIR-GO" "10" "6.09031154243458e-09" "1" "0.0052115702752958" "monoterpenoid biosynthesis" "TAIR-GO" "10" "1.5425203465546e-12" "1" "0.00115703093657462" "oxygen binding" "TAIR-GO" "10" "1.91284784596766e-16" "1" "0.000196291951562624" "response to wounding" "TAIR-GO" "10" "1.81515110622546e-05" "1" "0.0380149723167368" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "7.61507548029252e-10" "1" "0.00382238260865479" "monoterpene biosynthesis" "AraCyc" "10" "1.42093337514403e-11" "1" "0.00194392356989012" "serine-isocitrate lyase pathway" "AraCyc" "10" "0.01526642682726" "2" "0.108741904386140" "trehalose biosynthesis II" "AraCyc" "10" "0.0161728239269088" "2" "0.161806336574189" "trehalose biosynthesis III" "AraCyc" "10" "0.000344296574789559" "2" "0.0481413394323022" "energy" "FunCat" "10" "1.15139749729759e-12" "2" "7.78316544612481e-05" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "2" "0" "Diterpenoid biosynthesis" "KEGG" "10" "0.000192695553561609" "1" "0.0539162286258063" "diterpene biosynthesis" "LitPath" "10" "1.20280601180052e-10" "1" "0.00321920575547070" "Gibberellin metabolism" "LitPath" "10" "0.0347975635492291" "1" "0.254793888722249" "monoterpene biosynthesis" "LitPath" "10" "6.6807846871144e-06" "1" "0.0288118797878322" "sequiterpene biosynthesis" "LitPath" "10" "1.20280601180052e-10" "1" "0.00321920575547070" "gibberellic acid catabolism" "TAIR-GO" "9" "3.5241643438467e-10" "1" "0.00191136492483288" "RNA synthesis " "FunCat" "9" "0.0059446916407968" "2" "0.107405620169701" "Flavonoid biosynthesis" "KEGG" "9" "8.1038608471895e-05" "3" "0.00132568727500053" "UDP-carbohydrate metabolism" "BioPath" "8" "0.0115333382746304" "2" "0.0834638152011442" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "8" "6.91091532497259e-13" "1" "0.000583670764692331" "proanthocyanidin biosynthesis" "TAIR-GO" "8" "2.16226607058211e-11" "1" "0.000583670764692331" "biosynthesis of proto- and siroheme" "AraCyc" "8" "0.0406609859338491" "2" "0.0878114351299068" "trans-zeatin biosynthesis" "AraCyc" "8" "2.88389865874686e-07" "2" "0.000849688621170038" "triacylglycerol degradation" "AraCyc" "8" "0.00184545741611060" "3" "0.0466004284488734" "C-compound and carbohydrate utilization " "FunCat" "8" "7.36631541729453e-11" "3" "0" "Aminosugars metabolism" "KEGG" "8" "0.000183146315603324" "2" "0.0275915467822935" "Glyoxylate and dicarboxylate metabolism" "KEGG" "8" "0.0190717752882293" "2" "0.0579130149055395" "Streptomycin biosynthesis" "KEGG" "8" "0.000183146315603324" "2" "0.00713965614413597" "cytokinin biosynthesis" "TAIR-GO" "7" "4.13220770706525e-09" "1" "0.00115703093657462" "flavonoid biosynthesis" "TAIR-GO" "7" "6.4968405391355e-07" "1" "0.00394340438958177" "iron-sulfur cluster assembly" "TAIR-GO" "7" "0" "1" "0" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "1.81707056859406e-06" "1" "0.0052115702752958" "RNA modification " "FunCat" "7" "3.31311510915125e-09" "1" "0.00183611948479035" "tRNA modification " "FunCat" "7" "0" "1" "0" "tRNA synthesis " "FunCat" "7" "1.11908265635586e-05" "1" "0.0334429019895858" "triterpene biosynthesis" "LitPath" "7" "0.0107318811451757" "1" "0.108076903664888" "MUTANT DATA SET" "quantDE" "0.6557986" "maxDE" "10.513824277" "HORMONE DATA SET" "Phenylpropanoid Metabolism" "BioPath" "43" "4.1734709502821e-16" "10" "3.55062421431138e-05" "Cell Wall Carbohydrate Metabolism" "BioPath" "34" "1.28262326161251e-05" "8" "0.064153481683694" "Phenylpropanoid pathway" "LitPath" "31" "1.22207720223209e-33" "7" "2.42656266731611e-08" "Miscellaneous acyl lipid metabolism" "AcylLipid" "30" "4.19968499584263e-10" "14" "9.62361507131654e-05" "core phenylpropanoid metabolism" "BioPath" "26" "8.48187957132168e-18" "5" "4.88283946240104e-05" "Ribosome" "KEGG" "24" "1.57422921468602e-07" "4" "0.0319400378039076" "C-compound and carbohydrate metabolism" "FunCat" "22" "4.58572655963752e-05" "6" "0.0280343985760798" "pectin metabolism" "BioPath" "20" "1.13439701572623e-08" "6" "0.00686202208178080" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "17" "2.69714353782859e-06" "7" "0.00240985259572963" "protein synthesis" "FunCat" "12" "0.000677777473014383" "2" "0.173534075025533" "ribosome biogenesis" "FunCat" "12" "0.0214889287818811" "2" "0.296970424565697" "salycilic acid biosynthesis" "BioPath" "10" "4.85167885229130e-14" "1" "0.00137230890651242" "biogenesis of cell wall" "FunCat" "10" "7.49711217827691e-06" "3" "0.00582396103739641" "glycolysis and gluconeogenesis" "FunCat" "10" "0.00518330762038847" "2" "0.151011451258392" "Starch and sucrose metabolism" "KEGG" "10" "3.16000319630828e-05" "2" "0.0159244939330637" "lignin biosynthesis" "AraCyc" "9" "9.28924560231088e-07" "4" "8.08984777897608e-05" "cellulose biosynthesis" "BioPath" "8" "0.00183750270581019" "1" "0.152507983708935" "hemicellulose biosynthesis" "BioPath" "8" "4.04429139098688e-06" "1" "0.0244047342108894" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "8" "4.01534821452763e-18" "1" "0.000102470045507462" "cuticle biosynthesis" "TAIR-GO" "8" "2.46970560099502e-12" "2" "3.72740014179653e-05" "fatty acid metabolism" "TAIR-GO" "8" "1.53214130642260e-08" "2" "0.000372548477069548" "long-chain fatty acid metabolism" "TAIR-GO" "8" "1.45996569603155e-10" "2" "0.000113236524764770" "very-long-chain fatty acid metabolism" "TAIR-GO" "8" "2.29526455390627e-11" "2" "7.62942991020839e-05" "fatty acid biosynthesis -- initial steps" "AraCyc" "8" "2.00420997499871e-07" "4" "1.64643008023543e-05" "flavonoid biosynthesis" "AraCyc" "8" "2.06245406504138e-08" "4" "6.8614977011709e-06" "Fructose and mannose metabolism" "KEGG" "8" "1.90385624287419e-05" "1" "0.0424999437792812" "Glycan Biosynthesis and Metabolism" "KEGG" "8" "6.30666836215974e-05" "1" "0.0744490885487477" "Glycerolipid metabolism" "KEGG" "8" "3.52304354923187e-06" "1" "0.0229577732523125" "Flavonoid and anthocyanin metabolism" "BioPath" "7" "0.00170102760763161" "4" "0.00135430642458446"