"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Biosynthesis of steroids"	"KEGG"	"77"	"13"	""	""
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"69"	"15"	""	""
"triterpene biosynthesis"	"LitPath"	"47"	"7"	""	""
"isoprenoid biosynthesis "	"FunCat"	"38"	"7"	""	""
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"38"	"7"	""	""
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"35"	"5"	""	""
"secondary metabolism"	"FunCat"	"34"	"8"	""	""
"ORGAN DATA SET"	"quantDE"	"2.849795"	"maxDE"	"5.4856543"	"ORGAN DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"58"	"5.98251444039617e-35"	"23"	"7.22452232341981e-16"
"Phenylalanine metabolism"	"KEGG"	"57"	"3.88784184038671e-38"	"23"	"2.75513386257108e-17"
"Methane metabolism"	"KEGG"	"48"	"1.57851757720456e-35"	"22"	"6.71315683196454e-17"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"48"	"5.24577764679396e-46"	"22"	"2.38655032297925e-19"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"41"	"1.00566539114755e-06"	"11"	"0.0182840160476629"
"Phenylpropanoid Metabolism"	"BioPath"	"34"	"3.61136911102457e-08"	"9"	"0.00107326019323821"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"31"	"1.74857945311617e-14"	"5"	"0.00254049474194072"
"terpenoid metabolism"	"LitPath"	"31"	"2.06740423389363e-14"	"5"	"0.00301800337711255"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"28"	"0.000225913991831371"	"7"	"0.0109826516299659"
"Biosynthesis of steroids"	"KEGG"	"24"	"4.23164978432639e-07"	"4"	"0.0136607953942472"
"pectin metabolism"	"BioPath"	"21"	"4.17515033431518e-08"	"8"	"0.00150870471750412"
"detoxification"	"FunCat"	"21"	"0"	"7"	"0"
"cellulose biosynthesis"	"BioPath"	"20"	"1.12563535319400e-11"	"3"	"0.00943445823715392"
"Glucosyltransferases for benzoic acids"	"BioPath"	"20"	"2.02092677845752e-17"	"2"	"0.00157952143625182"
"flavonol biosynthesis"	"AraCyc"	"20"	"1.97150315529014e-27"	"5"	"1.46304501337351e-08"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"20"	"5.20234722637573e-06"	"3"	"0.133782683825370"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"20"	"8.41779181002985e-06"	"9"	"0.000205690998137719"
"triterpene biosynthesis"	"LitPath"	"20"	"1.57886502769496e-14"	"3"	"0.000793706793952616"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"1.25387825338982e-33"	"2"	"3.06034933613157e-06"
"monoterpene biosynthesis"	"LitPath"	"19"	"9.17831415756017e-17"	"2"	"0.000981639600394316"
"secondary metabolism"	"FunCat"	"17"	"5.73103186915782e-09"	"4"	"0.00266371173151941"
"hemicellulose biosynthesis"	"BioPath"	"16"	"7.46152875840435e-14"	"2"	"0.00297175631273003"
"Fructose and mannose metabolism"	"KEGG"	"16"	"8.37336099045012e-05"	"2"	"0.173530550460581"
"Glycerolipid metabolism"	"KEGG"	"16"	"5.67386676568606e-06"	"2"	"0.0829299211443103"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"14"	"5.10699515367659e-08"	"7"	"5.56664874984397e-06"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"14"	"3.987064242572e-19"	"2"	"4.18052357117743e-05"
"isoprenoid biosynthesis "	"FunCat"	"14"	"5.0744908718533e-05"	"3"	"0.0167271066259895"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"14"	"1.07322566741555e-05"	"3"	"0.0103289769069487"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"12"	"0.000183394569238433"	"2"	"0.179792892675800"
"biosynthesis of secondary products derived from primary amino acids"	"FunCat"	"11"	"2.04912077579027e-13"	"3"	"2.86307264161172e-05"
"detoxification involving cytochrome P450 "	"FunCat"	"11"	"1.34149869936473e-15"	"2"	"0.000819251567688272"
"Arginine and proline metabolism"	"KEGG"	"11"	"0.0039405248533918"	"2"	"0.143154044898653"
"fatty acid metabolism"	"TAIR-GO"	"10"	"8.63943553865769e-08"	"1"	"0.0233270935214856"
"toxin catabolism"	"TAIR-GO"	"10"	"3.42173616109767e-09"	"5"	"2.23970089679198e-06"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"0.00135528359058734"	"1"	"0.183700717292434"
"Fluorene degradation"	"KEGG"	"10"	"1.83983895976617e-05"	"1"	"0.0784063187266487"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"7.17056211015894e-05"	"1"	"0.097560605831814"
"fatty acid modulation"	"LitPath"	"10"	"1.70239416946098e-11"	"1"	"0.00229384701604389"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"6.92681507450446e-09"	"1"	"0.0123859633040318"
"secondary cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"7.32395429404941e-16"	"1"	"0.000526652889028794"
"monoterpene biosynthesis"	"AraCyc"	"9"	"1.50463501953686e-14"	"1"	"0.000249223555690583"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"7.43301092262653e-17"	"1"	"8.35630690381514e-05"
"biosynthesis of amines"	"FunCat"	"9"	"9.17482500214112e-16"	"1"	"0.000262714885322377"
"Alkaloid biosynthesis I"	"KEGG"	"9"	"0.00119635203769489"	"1"	"0.150037476560853"
"Alkaloid biosynthesis II"	"KEGG"	"9"	"6.92759607505641e-07"	"1"	"0.0241016841172801"
"beta-Alanine metabolism"	"KEGG"	"9"	"0.000309568264290468"	"1"	"0.128389165470407"
"Glycine, serine and threonine metabolism"	"KEGG"	"9"	"0.0143088047823187"	"1"	"0.312162958321414"
"Histidine metabolism"	"KEGG"	"9"	"2.78820408759994e-05"	"1"	"0.117869258241703"
"Tryptophan metabolism"	"KEGG"	"9"	"0.00222040301344668"	"1"	"0.288732041753619"
"Tyrosine metabolism"	"KEGG"	"9"	"0.0274146887366159"	"1"	"0.358476002649832"
"storage protein"	"FunCat"	"8"	"1.44760412624736e-12"	"2"	"4.03888572384039e-05"
"brassinosteroid modulation"	"LitPath"	"8"	"1.4693573584174e-06"	"4"	"0.000194392399399382"
"flavonoid, anthocyanin, and proanthocyanidin biosynthesis"	"LitPath"	"8"	"0.00670688335026337"	"2"	"0.0132344797525108"
"proanthocyanidin biosynthesis"	"LitPath"	"8"	"0.00670688335026337"	"2"	"0.0132344797525108"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"7"	"3.20210073895727e-10"	"1"	"0.000779876814360967"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"7"	"1.69874946502607e-11"	"1"	"0.000262714885322377"
"ion transport "	"FunCat"	"7"	"0"	"1"	"0"
"transport "	"FunCat"	"7"	"3.02345486104518e-11"	"1"	"0.000779876814360967"
"transport facilitation"	"FunCat"	"7"	"0"	"1"	"0.000779876814360967"
"transported compounds (substrates)"	"FunCat"	"7"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"1.552372"	"maxDE"	"4.78947"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"2.164855"	"maxDE"	"4.9567018"	"HORMONE DATA SET"
"Biosynthesis of steroids"	"KEGG"	"36"	"5.46852708342101e-30"	"6"	"1.5809682616508e-07"
"C-compound and carbohydrate metabolism"	"FunCat"	"26"	"2.61869782936531e-06"	"4"	"0.0462783923291034"
"glycolysis and gluconeogenesis"	"FunCat"	"26"	"3.00654958303836e-13"	"4"	"0.00164173836897509"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"24"	"0.0128292514225852"	"4"	"0.455901437464396"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"22"	"1.30054489254802e-05"	"4"	"0.0386494956839657"
"Phenylpropanoid Metabolism"	"BioPath"	"21"	"0.000588274269918263"	"6"	"0.00609499349976485"
"sucrose metabolism"	"BioPath"	"20"	"1.2834258306774e-19"	"2"	"0.00176629999189729"
"Galactose metabolism"	"KEGG"	"20"	"5.63616359719877e-18"	"2"	"0.00295849691562883"
"Starch and sucrose metabolism"	"KEGG"	"20"	"7.22560920843932e-11"	"2"	"0.0334011149637219"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"18"	"1.31877300963724e-09"	"3"	"0.00237403440462695"
"Lipid signaling"	"AcylLipid"	"16"	"0.00248877875875854"	"5"	"0.0186163673377279"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"14"	"0.000117433680922411"	"2"	"0.0487557572424329"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"14"	"2.42190896257071e-22"	"2"	"7.22879748026484e-06"
"sterol biosynthesis"	"TAIR-GO"	"14"	"4.19822647335412e-16"	"2"	"0.000141830874063523"
"triterpene biosynthesis"	"LitPath"	"14"	"1.34689812351196e-11"	"2"	"0.00230507142041325"
"Terpenoid biosynthesis"	"KEGG"	"12"	"2.67999701198033e-10"	"3"	"4.47284078600334e-05"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"1.22013456003315e-07"	"1"	"0.0120500078250766"
"isoprenoid biosynthesis"	"TAIR-GO"	"10"	"2.43346354434381e-16"	"1"	"0.000282996388864412"
"tryptophan catabolism"	"TAIR-GO"	"10"	"1.21486199404253e-21"	"1"	"2.85609982432389e-05"
"glucosinolate biosynthesis from tryptophan"	"AraCyc"	"10"	"1.54084448071204e-18"	"1"	"7.87952691166878e-05"
"IAA biosynthesis"	"AraCyc"	"10"	"1.32660759546352e-12"	"1"	"0.00168465496989514"
"IAA biosynthesis I"	"AraCyc"	"10"	"2.6122760880977e-14"	"1"	"0.000927692760369563"
"mevalonate pathway"	"AraCyc"	"10"	"9.56184795127949e-12"	"1"	"0.00426899955174111"
"C-compound and carbohydrate utilization "	"FunCat"	"10"	"2.65138970714506e-21"	"1"	"5.68700457639028e-05"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"10"	"6.06618054143465e-06"	"1"	"0.0388410334859761"
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	"10"	"0.00223867256383531"	"1"	"0.253194795972016"
"Glucosinolate Metabolism"	"LitPath"	"10"	"0.00274517363481242"	"1"	"0.104464087515836"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"10"	"0.000619428033931854"	"1"	"0.114059210075620"
"mevalonate pathway, cytosol"	"LitPath"	"10"	"3.20108622832100e-06"	"1"	"0.0386795433816905"
"secondary metabolism"	"FunCat"	"9"	"4.23535637037769e-05"	"2"	"0.0103048151777602"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"8"	"0.0225244309179974"	"2"	"0.0378977935063533"
"storage protein"	"FunCat"	"8"	"1.99952453027735e-14"	"2"	"3.97724288984239e-06"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"8"	"0.00273055023823250"	"4"	"0.00219591220508068"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"0.00930138148893104"	"2"	"0.0359597390299394"
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	"8"	"0.00133779422910885"	"2"	"0.00794735310843396"
"isoprenoid biosynthesis "	"FunCat"	"7"	"0.00754126104924685"	"1"	"0.0790088386627661"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"7"	"0.0034256257993019"	"1"	"0.0617354597958352"
"MUTANT DATA SET"	"quantDE"	"3.762437"	"maxDE"	"6.245877315"	"MUTANT DATA SET"
"Photosystems "	"BioPath"	"22"	"7.74968777307673e-11"	"3"	"0.00383749985943736"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"19"	"3.06654703094339e-11"	"4"	"0.000746770089751544"
"isoprenoid biosynthesis "	"FunCat"	"17"	"6.81691473234443e-13"	"3"	"0.000413691930889806"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"17"	"6.96174650430838e-14"	"3"	"0.000239458132478302"
"Biosynthesis of steroids"	"KEGG"	"17"	"2.37539604332475e-17"	"3"	"1.56746682203043e-05"
"additional photosystem II components"	"BioPath"	"16"	"2.61891936227752e-12"	"2"	"0.00173460554814635"
"ATP synthase components"	"BioPath"	"16"	"1.06754552125525e-22"	"2"	"2.55585949137805e-05"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"16"	"1.56162075932726e-24"	"2"	"8.93903361177054e-06"
"proton transport"	"TAIR-GO"	"16"	"1.56162075932726e-24"	"2"	"8.93903361177054e-06"
"triterpene biosynthesis"	"LitPath"	"13"	"3.26980357106835e-16"	"2"	"0.000185171423880544"
"Intermediary Carbon Metabolism"	"BioPath"	"12"	"0.00263706569455205"	"2"	"0.0751219859131139"
"C-compound and carbohydrate metabolism"	"FunCat"	"12"	"0.0239940334281823"	"2"	"0.212364933481515"
"glycolysis and gluconeogenesis"	"FunCat"	"12"	"3.08989259915586e-05"	"2"	"0.0322302525549301"
"proton-transporting ATP synthase, catalytic core (sensu Eukaryota)"	"TAIR-GO"	"10"	"0"	"1"	"0"
"Calvin cycle"	"AraCyc"	"10"	"1.19771400644453e-20"	"1"	"8.82054617624932e-05"
"photosynthesis"	"FunCat"	"10"	"2.94524658201186e-07"	"1"	"0.0286196250322099"
"Carbon fixation"	"KEGG"	"10"	"1.43008247823599e-08"	"1"	"0.0219527311634902"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"10"	"2.94184842101871e-12"	"1"	"0.00430413225125339"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"8"	"0.00104376728348497"	"2"	"0.00517002416738206"
"secondary metabolism"	"FunCat"	"8"	"1.27593346374215e-05"	"2"	"0.00528197162577442"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"1.24356655143413e-07"	"2"	"0.000442929367079887"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"7"	"1.29017328236715e-07"	"1"	"0.00266283021341320"
"Translation factors"	"KEGG"	"6.5"	"7.39805980357304e-05"	"2"	"0.00317731738069329"