"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"ORGAN DATA SET"	"quantDE"	"2.266341"	"maxDE"	"4.4654039"	"ORGAN DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"64"	"1.83522933265710e-43"	"26"	"4.03648833665549e-18"
"Methane metabolism"	"KEGG"	"58"	"6.44857319083116e-50"	"26"	"1.08952093903412e-20"
"Phenylalanine metabolism"	"KEGG"	"54"	"9.0710495802886e-37"	"25"	"1.41958247047149e-18"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"54"	"6.54838984435142e-57"	"25"	"2.53412164710478e-22"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"43"	"3.37811773254752e-07"	"11"	"0.047444475225402"
"Phenylpropanoid Metabolism"	"BioPath"	"39"	"1.56014434327019e-10"	"12"	"4.51630525294343e-05"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"39"	"1.58674065680645e-19"	"7"	"0.000206627187639057"
"terpenoid metabolism"	"LitPath"	"39"	"1.97704253465890e-19"	"7"	"0.000263629215533425"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"32"	"8.94957385017504e-05"	"8"	"0.0116461023255769"
"Biosynthesis of steroids"	"KEGG"	"28"	"2.82708311566583e-10"	"5"	"0.00448503772530567"
"detoxification"	"FunCat"	"27"	"0"	"10"	"0"
"pectin metabolism"	"BioPath"	"21"	"7.07382694951304e-08"	"8"	"0.00386490958505327"
"flavonol biosynthesis"	"AraCyc"	"21"	"1.96908111025335e-24"	"6"	"6.30304797084083e-09"
"Glucosyltransferases for benzoic acids"	"BioPath"	"20"	"3.70560975058046e-17"	"2"	"0.00231141636326406"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"20"	"8.41779181002985e-06"	"9"	"0.000205690998137719"
"triterpene biosynthesis"	"LitPath"	"20"	"2.35915677587436e-13"	"3"	"0.00168371270174229"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"1.24198714715784e-34"	"2"	"3.59902478849026e-06"
"monoterpene biosynthesis"	"LitPath"	"19"	"1.30556832862202e-15"	"2"	"0.00174921443444717"
"secondary metabolism"	"FunCat"	"18"	"9.31564218904936e-10"	"5"	"0.000607651005692787"
"Fructose and mannose metabolism"	"KEGG"	"18"	"2.14383248316018e-06"	"2"	"0.209718983438735"
"lactose degradation IV"	"AraCyc"	"16"	"1.01692096973768e-25"	"3"	"1.35891966035680e-06"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"15"	"1.09117315824391e-08"	"8"	"1.51508425530301e-06"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"14"	"7.6005520965995e-20"	"2"	"4.90881084500617e-05"
"isoprenoid biosynthesis "	"FunCat"	"14"	"5.3686224266493e-05"	"3"	"0.0228704672878975"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"14"	"1.13837335424906e-05"	"3"	"0.0142627242149186"
"cellulose biosynthesis"	"BioPath"	"12"	"3.14878007355668e-05"	"2"	"0.0707627104450377"
"toxin catabolism"	"TAIR-GO"	"12"	"3.56375065205115e-12"	"6"	"1.27647789975310e-07"
"colanic acid building blocks biosynthesis"	"AraCyc"	"12"	"1.44452919893642e-05"	"2"	"0.0468656570053854"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"12"	"4.34706348028135e-07"	"2"	"0.0238011294711536"
"galactose degradation I"	"AraCyc"	"12"	"7.38247585032181e-18"	"2"	"9.77119949521861e-05"
"glucose conversion"	"AraCyc"	"12"	"1.62408814135986e-07"	"2"	"0.019645607556704"
"UDP-glucose conversion"	"AraCyc"	"12"	"1.20224502765857e-07"	"2"	"0.0183583182975494"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"12"	"0.0107205723344533"	"2"	"0.369900634274487"
"Glycerolipid metabolism"	"KEGG"	"12"	"0.000461214062216286"	"2"	"0.102937368986891"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"12"	"0.000183394569238433"	"2"	"0.179792892675800"
"detoxification involving cytochrome P450 "	"FunCat"	"11"	"1.42379256018848e-15"	"2"	"0.00107866406325047"
"GDP-carbohydrate biosynthesis"	"BioPath"	"10"	"5.075591115925e-10"	"1"	"0.018286781441843"
"fatty acid metabolism"	"TAIR-GO"	"10"	"2.88295125124973e-08"	"1"	"0.0257184934574494"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"0.000709899621965982"	"1"	"0.211958402341806"
"Fluorene degradation"	"KEGG"	"10"	"8.72515985909424e-06"	"1"	"0.0921926077901614"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"3.48697838278324e-05"	"1"	"0.114270579611904"
"fatty acid modulation"	"LitPath"	"10"	"7.31340346355557e-11"	"1"	"0.00338863763733757"
"monoterpene biosynthesis"	"AraCyc"	"9"	"1.94003279459435e-12"	"1"	"0.000616385742453961"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"1.00336274205163e-14"	"1"	"0.000207402031711808"
"transport "	"FunCat"	"9"	"5.15025841681801e-15"	"2"	"5.50263071603482e-06"
"transport facilitation"	"FunCat"	"9"	"0"	"2"	"5.50263071603482e-06"
"hemicellulose biosynthesis"	"BioPath"	"8"	"1.87423324364014e-05"	"1"	"0.0449136184138829"
"gluconeogenesis"	"AraCyc"	"8"	"0.00297597544744361"	"2"	"0.0268164943856598"
"storage protein"	"FunCat"	"8"	"1.51343577279778e-12"	"2"	"5.36304342066452e-05"
"Terpenoid biosynthesis"	"KEGG"	"8"	"0.00301083031411373"	"2"	"0.0380628640512346"
"brassinosteroid modulation"	"LitPath"	"8"	"4.45792408025493e-06"	"4"	"0.000501636253756625"
"flavonoid, anthocyanin, and proanthocyanidin biosynthesis"	"LitPath"	"8"	"0.0153188853017244"	"2"	"0.0224900740498636"
"proanthocyanidin biosynthesis"	"LitPath"	"8"	"0.0153188853017244"	"2"	"0.0224900740498636"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"7"	"3.32989448216349e-10"	"1"	"0.000940949852441956"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"7"	"1.76716092307664e-11"	"1"	"0.000317318371291342"
"ion transport "	"FunCat"	"7"	"0"	"1"	"0"
"transported compounds (substrates)"	"FunCat"	"7"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"0.8158695"	"maxDE"	"6.079975"	"STRESS DATA SET"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"12"	"7.03388165338242e-10"	"3"	"0.000942104440078886"
"terpenoid metabolism"	"LitPath"	"12"	"7.5480526318646e-10"	"3"	"0.00106754414068110"
"HORMONE DATA SET"	"quantDE"	"1.617426"	"maxDE"	"3.2493624"	"HORMONE DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"32.5"	"6.54148853878963e-07"	"7"	"0.0336085147553158"
"pectin metabolism"	"BioPath"	"22.5"	"4.28902225154165e-12"	"6"	"0.00128825562038864"
"Biosynthesis of steroids"	"KEGG"	"19"	"1.09804976283141e-12"	"4"	"0.000158347789879379"
"Phenylpropanoid Metabolism"	"BioPath"	"16"	"0.00616485181202421"	"3"	"0.137472007152567"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"15"	"4.17278978913762e-06"	"3"	"0.0233522482435352"
"flavonol biosynthesis"	"AraCyc"	"14"	"2.61617086757440e-19"	"2"	"0.000230482081244926"
"C-compound and carbohydrate metabolism"	"FunCat"	"14"	"0.000164018319372702"	"4"	"0.0462783923291034"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"14"	"3.26577993680301e-08"	"7"	"1.30505746080826e-05"
"Methane metabolism"	"KEGG"	"12"	"5.12660623209048e-09"	"6"	"3.11783425897166e-05"
"Pentose and glucuronate interconversions"	"KEGG"	"12"	"2.64310733218212e-14"	"2"	"0.000596120293133989"
"Phenylalanine metabolism"	"KEGG"	"12"	"2.14438003869902e-07"	"6"	"4.97454343476222e-05"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"12"	"2.05531052264716e-11"	"6"	"7.16776691922303e-06"
"Terpenoid biosynthesis"	"KEGG"	"12"	"3.89477562197099e-11"	"3"	"9.79490928770462e-05"
"GDP-carbohydrate biosynthesis"	"BioPath"	"10"	"6.47060639365534e-12"	"1"	"0.00561473313093286"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"2.21350427720106e-08"	"1"	"0.0095219687010802"
"colanic acid building blocks biosynthesis"	"AraCyc"	"10"	"2.16288739133549e-07"	"1"	"0.047167540501817"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"10"	"8.44056860930867e-09"	"1"	"0.0290552369981534"
"galactose degradation I"	"AraCyc"	"10"	"5.35452730148919e-18"	"1"	"0.00077540184669592"
"glucose conversion"	"AraCyc"	"10"	"3.4585794106608e-09"	"1"	"0.0253855233766003"
"lactose degradation IV"	"AraCyc"	"10"	"5.35452730148919e-18"	"1"	"0.00077540184669592"
"UDP-glucose conversion"	"AraCyc"	"10"	"2.63713296602045e-09"	"1"	"0.0242081957180995"
"Fructose and mannose metabolism"	"KEGG"	"10"	"3.12475410415797e-06"	"1"	"0.0982148452157491"
"Oxidative phosphorylation"	"KEGG"	"10"	"6.14626791497044e-06"	"2"	"0.0512146043343589"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"8"	"0.00243201827102254"	"2"	"0.0138569596402864"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"8"	"0.00835634780397208"	"2"	"0.0276412137107540"
"biogenesis of cell wall"	"FunCat"	"8"	"2.23189338971448e-06"	"2"	"0.0122959697933457"
"Starch and sucrose metabolism"	"KEGG"	"8"	"0.00372792686484264"	"1"	"0.214627895467971"
"Lipid signaling"	"AcylLipid"	"8"	"0.0475042272495478"	"3"	"0.0689199256508756"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"0.000115688151216692"	"2"	"0.0123888593205437"
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	"8"	"6.50833865775297e-06"	"2"	"0.00170786236915023"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"7"	"6.48202270830266e-14"	"1"	"0.000144513388046403"
"secondary metabolism"	"FunCat"	"7"	"9.845126547047e-06"	"1"	"0.0767719360459191"
"triterpene biosynthesis"	"LitPath"	"7"	"8.22913105413976e-07"	"1"	"0.0119212713094808"
"MUTANT DATA SET"	"quantDE"	"1.269108"	"maxDE"	"4.331070799"	"MUTANT DATA SET"
"core phenylpropanoid metabolism"	"BioPath"	"20"	"2.09642626474174e-16"	"2"	"0.00219160969480616"
"Phenylpropanoid Metabolism"	"BioPath"	"20"	"1.54585267799133e-06"	"2"	"0.0804571638247246"
"lignin biosynthesis"	"TAIR-GO"	"20"	"1.47648070268944e-28"	"2"	"2.36831940024882e-05"
"lignin biosynthesis"	"AraCyc"	"20"	"2.02497761064215e-16"	"2"	"0.00242472145091349"
"Phenylpropanoid pathway"	"LitPath"	"20"	"9.66004790898118e-13"	"2"	"0.00557607012357216"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"14"	"0.00316793935568817"	"2"	"0.0739038287748763"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"14"	"2.36625705251383e-12"	"2"	"0.000662778224628046"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"14"	"4.35882824550582e-08"	"3"	"0.00914363008377738"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"1.89107249615724e-06"	"1"	"0.0161614263214301"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"10"	"0.00409084763054204"	"1"	"0.0874712322930104"
"chlorophyll biosynthesis"	"TAIR-GO"	"10"	"6.75997152679848e-10"	"1"	"0.00409453858343008"
"chlorophyll biosynthesis"	"AraCyc"	"10"	"5.05094313404196e-06"	"1"	"0.0412330138732904"
"methionine and S-adenosylmethionine synthesis"	"AraCyc"	"10"	"2.79469699909429e-15"	"1"	"0.000555992045376726"
"methionine degradation I"	"AraCyc"	"10"	"1.01362810379599e-12"	"1"	"0.00164253145589961"
"phenylpropanoid biosynthesis"	"AraCyc"	"10"	"2.05585703369200e-16"	"1"	"0.000555992045376726"
"suberin biosynthesis"	"AraCyc"	"10"	"4.08272758572811e-09"	"1"	"0.00541582352626889"
"amino acid metabolism"	"FunCat"	"10"	"1.97025491542716e-07"	"1"	"0.0266038310565501"
"Flavonoid biosynthesis"	"KEGG"	"10"	"6.54424571312115e-11"	"1"	"0.00776442346514333"
"Inositol phosphate metabolism"	"KEGG"	"10"	"0.000149500072786336"	"3"	"0.00851679678110574"
"Methionine metabolism"	"KEGG"	"10"	"3.27133031334704e-09"	"1"	"0.0120364870980336"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"2.89691287069110e-07"	"1"	"0.0214303628068525"
"Selenoamino acid metabolism"	"KEGG"	"10"	"3.71387651068323e-07"	"1"	"0.02614338719491"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"10"	"1.55096390070523e-05"	"1"	"0.0129367795096452"
"chlorophyll biosynthesis"	"LitPath"	"10"	"1.25186968898554e-10"	"1"	"0.000925498056026462"
"Benzoate degradation via CoA ligation"	"KEGG"	"8"	"0.00124328060343453"	"2"	"0.0384584540473224"
"Methane metabolism"	"KEGG"	"8"	"3.01622002641151e-05"	"3"	"0.00449831376537104"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"8"	"0.000458605197522666"	"2"	"0.0312111242681390"
"Lipid signaling"	"AcylLipid"	"8"	"0.00114985711607281"	"2"	"0.0499101663881048"
"starch catabolism"	"TAIR-GO"	"7"	"7.34773703101766e-13"	"1"	"0.000141188066129057"
"acetyl-CoA assimilation"	"AraCyc"	"7"	"5.21046477867186e-05"	"1"	"0.0166421616322313"
"gluconeogenesis"	"AraCyc"	"7"	"0.000304239879294665"	"1"	"0.0316134101093137"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"7"	"1.40185216435665e-06"	"1"	"0.00878577579756405"