"Pathway" "Pathway.source" "Annotation.score" "p.value.score" "No.of.genes" "p.value.genes" "IN THREE DATA SETS" "sum.of.scores" "sum.of.genes" "terpenoid metabolism" "LitPath" 24 6 "ORGAN DATA SET" "quantDE" 0.1252829 "maxDE" 1.2767929 "ORGAN DATA SET" "Biosynthesis of prenyl diphosphates" "BioPath" 10 0.0000000000220685395774617 1 0.0015807662191485 "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" 10 0.00000000107121255950136 1 0.0032320561935783 "Biosynthesis of steroids" "KEGG" 10 0.000000000000417861095636093 1 0.000406769065262705 "Terpenoid biosynthesis" "KEGG" 10 1.97052099832919E-017 1 0.0000911622923914558 "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" 10 0 1 0 "terpenoid metabolism" "LitPath" 8 0.00000000633981042150269 2 0.000894445609902415 "STRESS DATA SET" "quantDE" 0.9124014 "maxDE" 2.160711 "STRESS DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" 12 0.00000320195066265123 2 0.0162901845172494 "gibberellic acid biosynthesis" "TAIR-GO" 10 2.41851618223E-016 1 0.000282996388864412 "seed germination" "TAIR-GO" 10 0 1 0 "Diterpenoid biosynthesis" "KEGG" 10 3.80946833620563E-015 1 0.000386697854278985 "Gibberellin metabolism" "LitPath" 10 0.0000000107692866014015 1 0.0151330908699267 "giberelin biosynthesis" "LitPath" 10 0.000000000229730154645217 1 0.00888838610858189 "trehalose biosynthesis" "TAIR-GO" 9 5.10210709913556E-023 1 0.00000519290877149799 "trehalose biosynthesis I" "AraCyc" 9 0.0000000000290780460239596 1 0.00209285955638002 "trehalose biosynthesis II" "AraCyc" 9 0.00000000000108691742015973 1 0.0010586606907344 "trehalose biosynthesis III" "AraCyc" 9 7.03772675749323E-015 1 0.000369666729489222 "C-compound and carbohydrate metabolism" "FunCat" 9 0.00185547579968674 1 0.268887696525619 "energy" "FunCat" 9 3.87667857628064E-022 1 0.0000407107329641878 "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" 9 8.99829384986224E-027 1 0 "cellulose biosynthesis" "BioPath" 8 0.00000000122389109894763 1 0.00272600443699763 "hemicellulose biosynthesis" "BioPath" 8 0.000000000000890112510346682 1 0.000337778386364021 "Fructose and mannose metabolism" "KEGG" 8 0.00000000960699249551931 1 0.00578767877845175 "Glycan Biosynthesis and Metabolism" "KEGG" 8 0.0000000362125795237449 1 0.0106691600743145 "Glycerolipid metabolism" "KEGG" 8 0.000000001534007413228 1 0.00300571175519655 "mono-/sesqui-/di-terpene biosynthesis" "LitPath" 8 0.0000161331954487167 2 0.00413991752859283 "terpenoid metabolism" "LitPath" 8 0.0000168855567542495 2 0.00454226636014474 "HORMONE DATA SET" "quantDE" 0 "maxDE" 0.937018 "HORMONE DATA SET" "Lipid signaling" "AcylLipid" 11 0 2 0 "Cell Wall Carbohydrate Metabolism" "BioPath" 10.5 0.00000733472127936907 3 0.0114224930046461 "lipases pathway" "AraCyc" 9 8.59045614091845E-019 1 0.0000407777739300288 "degradation " "FunCat" 9 0.0000000000147905211528245 1 0.00181805246614512 "intracellular signalling" "FunCat" 9 0.00000000370119310367622 1 0.00800226946498568 "lipid, fatty acid and isoprenoid degradation" "FunCat" 9 0.0000000000429707660703928 1 0.00196096974034388 "second messenger mediated signal transduction" "FunCat" 9 8.37269188924034E-020 1 0.0000345276717544386 "mono-/sesqui-/di-terpene biosynthesis" "LitPath" 8 0.00000000603036018633171 2 0.000812447772913665 "terpenoid metabolism" "LitPath" 8 0.00000000633981042150269 2 0.000894445609902415 "MUTANT DATA SET" "quantDE" 0 "maxDE" 1.537572513 "MUTANT DATA SET"