Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A18 (At3g20090)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Cell Wall Carbohydrate Metabolism	BioPath	28	4
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP705A18 (At3g20090)
max. difference between log2-ratios:				3.7
max. difference between log2-ratios excluding lowest and highest 5%:				2.1
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
C-compound and carbohydrate metabolism	FunCat	22	0.000	4	0.022
Glycan Biosynthesis and Metabolism	KEGG	21	0.000	3	0.007
Cell Wall Carbohydrate Metabolism	BioPath	20	0.000	2	0.121
Intermediary Carbon Metabolism	BioPath	18	0.000	3	0.002
colanic acid building blocks biosynthesis	AraCyc	18	0.000	4	0.000
Glycolysis / Gluconeogenesis	KEGG	16	0.000	3	0.014
allantoin degradation	AraCyc	12	0.000	2	0.000
isoleucine biosynthesis I	AraCyc	12	0.000	2	0.001
leucine biosynthesis	AraCyc	12	0.000	2	0.001
valine biosynthesis	AraCyc	12	0.000	2	0.001
fermentation	FunCat	12	0.000	2	0.000
N-Glycan biosynthesis	KEGG	11	0.000	2	0.001
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A18 (At3g20090)
max. difference between log2-ratios:				4.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
mono-/sesqui-/di-terpene biosynthesis	LitPath	12	0.000	3	0.000
terpenoid metabolism	LitPath	12	0.000	3	0.000
Cell Wall Carbohydrate Metabolism	BioPath	8	0.000	2	0.016
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP705A18 (At3g20090)
max. difference between log2-ratios:				2.0
max. difference between log2-ratios excluding lowest and highest 5%:				1.4
						Link to hormones etc. heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP705A18 (At3g20090)
max. difference between log2-ratios:				3.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.9
						Link to mutants heatmap
there are no co-expressed genes with r>0.5
page created by Juergen Ehlting	06/06/06