"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN THREE DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"terpenoid metabolism"	"LitPath"	28	7		
"ORGAN DATA SET"	"quantDE"	0	"maxDE"	2.8399319	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	0.9179858	"maxDE"	4.983887	"STRESS DATA SET"
"Benzoate degradation via CoA ligation"	"KEGG"	18	6.86315162370424E-016	2	0.00858705861383173
"Inositol phosphate metabolism"	"KEGG"	18	4.10623078293341E-015	2	0.010876704135393
"Nicotinate and nicotinamide metabolism"	"KEGG"	18	5.08219093366342E-017	2	0.00684265512739449
"N-terminal protein myristoylation"	"TAIR-GO"	9	0.000000000000136349401532652	1	0.000785138855097489
"phosphorylation"	"TAIR-GO"	9	0	1	0
"protein amino acid phosphorylation"	"TAIR-GO"	9	9.22154282277113E-017	1	0.000144513388046403
"secondary metabolism"	"FunCat"	9	0.0000000000000869559317803352	2	0.0000660770205297269
"terpenoid metabolism"	"LitPath"	8	0.0000000566061156715688	2	0.0017314561714493
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	7	0.000000000031729600815597	1	0.000402165178405167
"triterpene biosynthesis"	"LitPath"	7	0.00000000000518698087208255	1	0.000195498325231014
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	7	0.00000557512991947681	1	0.00960548437968382
"HORMONE DATA SET"	"quantDE"	0	"maxDE"	4.3684523	"HORMONE DATA SET"
"Lipid signaling"	"AcylLipid"	11	0.000000220241859177637	2	0.0152941731243811
"lipases pathway"	"AraCyc"	9	0	1	0
"degradation "	"FunCat"	9	0.000000000000082692084887985	1	0.000397681718115787
"intracellular signalling"	"FunCat"	9	0.0000000000231752080525167	1	0.00179451163635216
"lipid, fatty acid and isoprenoid degradation"	"FunCat"	9	0.000000000000244343136574798	1	0.000429311526801416
"second messenger mediated signal transduction"	"FunCat"	9	4.1373321355218E-022	1	0.00000741148057811799
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	8	0.0000000538870890050848	2	0.00157451669115926
"terpenoid metabolism"	"LitPath"	8	0.0000000566061156715688	2	0.0017314561714493
"MUTANT DATA SET"	"quantDE"	0	"maxDE"	4.278302125	"MUTANT DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	83.5	7.5032351467383E-018	29	0.00000163552484092935
"pectin metabolism"	"BioPath"	52.5	3.96478669671014E-026	23	0.00000000026889810776493
"Ribosome"	"KEGG"	38	0.000359475496454114	7	0.161016398916338
"Phenylpropanoid Metabolism"	"BioPath"	33	0.00233068299642741	8	0.189082103692671
"nucleotide metabolism"	"FunCat"	28	0	6	0
"Nucleotide Metabolism"	"KEGG"	24	0.00000000103918259386345	5	0.00490245838162799
"Pyrimidine metabolism"	"KEGG"	24	1.70618261540573E-016	5	0.000157312161909411
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	23	0.0150575044563209	7	0.0344399210188227
"(deoxy)ribose phosphate degradation"	"AraCyc"	20	5.43063431235014E-020	4	0.00000586705179942208
"pyrimidine nucleotide metabolism"	"FunCat"	20	3.28405782954352E-016	4	0.000193541637656265
"biogenesis of cell wall"	"FunCat"	18	0.000178237014859078	7	0.00132909998580326
"Lipid signaling"	"AcylLipid"	18	0.00233289221785283	4	0.310540054094187
"transcription"	"FunCat"	17	2.03943827327712E-015	4	0.0000680109371603855
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	16	0.000503237297128846	2	0.33799238854379
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	16	0.00000241783621827646	2	0.0608443970018974
"Shikimate pathway"	"LitPath"	16	0.027532600208968	2	0.424106109189614
"RNA synthesis "	"FunCat"	15	0.00000011411897688443	3	0.0125414943694473
"Starch and sucrose metabolism"	"KEGG"	15	0.00151224941309385	3	0.0721117852344737
"jasmonic acid biosynthesis"	"TAIR-GO"	14	0.0000000000132293960284456	2	0.00105494010563543
"acetate fermentation"	"AraCyc"	14	0.0032788454068494	4	0.0382066688538591
"fructose degradation (anaerobic)"	"AraCyc"	14	0.00187518647480346	4	0.0286801079510036
"glycerol degradation II"	"AraCyc"	14	0.0000979898322958242	4	0.00735716394124793
"glycolysis IV"	"AraCyc"	14	0.00201684494412258	4	0.0304492364322263
"jasmonic acid biosynthesis"	"AraCyc"	14	0.000000224899244399296	2	0.0122779981262028
"non-phosphorylated glucose degradation"	"AraCyc"	14	0.0000000149575013818076	4	0.00161047025268634
"sorbitol fermentation"	"AraCyc"	14	0.00350315056752852	4	0.0341906362045362
"trans-zeatin biosynthesis"	"AraCyc"	14	0.000000000000020718707047158	3	0.0000350664678742506
"Flavonoid and anthocyanin metabolism"	"BioPath"	13	0.0000792114665130645	4	0.0521508865390006
"abscisic acid biosynthesis"	"AraCyc"	12	0.0000000000000582106345005469	2	0.000195449235270008
"alanine biosynthesis II"	"AraCyc"	12	0.00000307630567407904	2	0.0301150497075059
"lipases pathway"	"AraCyc"	12	0.0000275469968503567	2	0.0333772022342277
"mixed acid fermentation"	"AraCyc"	12	0.000163139924345792	3	0.0147934296004209
"phenylalanine biosynthesis II"	"AraCyc"	12	0.000000364228099964843	2	0.0213985666888403
"C-compound, carbohydrate catabolism"	"FunCat"	12	0.000187820247352709	3	0.0502587342871209
"Carbon fixation"	"KEGG"	12	0.00553966816186786	3	0.0469341098709451
"Glycolysis / Gluconeogenesis"	"KEGG"	12	0.0157990484306978	3	0.0778381950992205
"Purine metabolism"	"KEGG"	12	0.00170199654923449	3	0.0365552180951623
"Pyruvate metabolism"	"KEGG"	12	0.0157990484306978	3	0.0639479472833664
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	12	0.000528309083512384	4	0.0207906926575749
"abscisic acid biosynthesis"	"LitPath"	12	0.0000000266602764615373	2	0.00864386936299811
"Carotenoid and abscisic acid metabolism"	"LitPath"	12	0.00591683727009687	2	0.120455404490692
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	12	0.0179507527373422	3	0.102313234720967
"terpenoid metabolism"	"LitPath"	12	0.0187296649002844	3	0.1120772043933
"trehalose metabolism"	"BioPath"	10	0.00000000306776464839638	2	0.0109892621689388
"anther dehiscence"	"TAIR-GO"	10	0	1	0
"aromatic amino acid family biosynthesis"	"TAIR-GO"	10	0.0000000223622777457355	1	0.0100601207937122
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	10	0.00000000261407777784544	1	0.00739607525854745
"glucosinolate biosynthesis"	"TAIR-GO"	10	0.000000000720532346364491	1	0.00322421676476631
"oxygen binding"	"TAIR-GO"	10	1.98557678684728E-017	1	0.000119956192621604
"pollen maturation"	"TAIR-GO"	10	0	1	0
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	10	0.00000000160058293178767	1	0.00435195603422743
"trehalose biosynthesis II"	"AraCyc"	10	0.02562840250927	2	0.185292551700536
"trehalose biosynthesis III"	"AraCyc"	10	0.000621630842613467	2	0.0565894529630275
"tyrosine biosynthesis I"	"AraCyc"	10	0.0000000208488469326433	1	0.0238584924176256
"biosynthesis of derivatives of dehydroquinic acid, shikimic acid and chorismic acid"	"FunCat"	10	3.33348634306168E-016	1	0.00669983028593138
"energy"	"FunCat"	10	0.000000000000120502676938	2	0.0000394007813013049
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	10	0	2	0
"Ligand-Receptor Interaction"	"KEGG"	10	0.0000237958974588711	5	0.000613594274095662
"Transcription"	"KEGG"	10	0.01095284787326	3	0.0778381950992205
"chorismate biosynthesis"	"LitPath"	10	0.000855935946074444	1	0.197118449267065
"starch metabolism"	"BioPath"	9	0.00470113447153943	1	0.30922802672357
"brassinosteroid biosynthesis"	"TAIR-GO"	9	0.000000174064730706795	1	0.00739607525854745
"steroid biosynthesis"	"TAIR-GO"	9	0.000000174064730706795	1	0.00739607525854745
"brassinosteroid biosynthesis I"	"AraCyc"	9	0.000179419606126997	1	0.103611395789577
"dTDP-rhamnose biosynthesis"	"AraCyc"	9	0.00853873690938093	1	0.333020945799826
"peptidoglycan biosynthesis"	"AraCyc"	9	0.00000000594332994476989	1	0.0188930798697885
"starch biosynthesis"	"AraCyc"	9	0	1	0
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	9	0.000000129667754233575	1	0.014427314360957
"proanthocyanidin biosynthesis"	"TAIR-GO"	8	0.00000000000349971730243607	1	0.00035742174068742
"gibberellin biosynthesis"	"AraCyc"	8	0.00019449287265066	2	0.003733014420615
"C-compound, carbohydrate anabolism"	"FunCat"	8	0.000484923791923575	2	0.0255581014018882
"general transcription activities"	"FunCat"	8	0.0000139215484707994	2	0.0108717242598127
"mRNA synthesis "	"FunCat"	8	0.00471884169099762	2	0.0633722565781912
"purine nucleotide metabolism"	"FunCat"	8	0.00334882126380551	2	0.0333876925106685
"Ion channels"	"KEGG"	8	0.000476128162907558	4	0.00338162224022269
"RNA polymerase"	"KEGG"	8	0.00287305844280046	2	0.0509245446476109
"cytokinin biosynthesis"	"TAIR-GO"	7	0.000000000836612115641461	1	0.000709985386030034
"polysaccharide biosynthesis"	"TAIR-GO"	7	0	1	0
"mannosyl-chito-dolichol biosynthesis"	"AraCyc"	7	0.00000000109254116760561	1	0.00221586924975936
"protein modification "	"FunCat"	7	0.000187582890084507	1	0.102572883084756
"RNA modification "	"FunCat"	7	0.00000000064797987081553	1	0.00116851459973584
"tRNA modification "	"FunCat"	7	0	1	0
"tRNA synthesis "	"FunCat"	7	0.00000244596665712331	1	0.0219153548274165
"N-Glycan biosynthesis"	"KEGG"	7	0.0000506930264223478	1	0.0539224660132706