"Pathway" "Pathway.source" "Annotation.score" "p.value.score" "No.of.genes" "p.value.genes" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "ORGAN DATA SET" "quantDE" "2.981387" "maxDE" "4.7729593" "ORGAN DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "31" "6.71765678557802e-10" "7" "0.00375707891874095" "cellulose biosynthesis" "BioPath" "20" "8.75219601765423e-18" "3" "0.000423676189708611" "Glycerolipid metabolism" "KEGG" "20" "7.3275539250984e-18" "3" "0.000543645399304402" "Methane metabolism" "KEGG" "18" "2.31400250224047e-15" "8" "2.74865542584713e-07" "hemicellulose biosynthesis" "BioPath" "16" "5.85843995794883e-19" "2" "0.000258934030722111" "Fructose and mannose metabolism" "KEGG" "16" "1.1719975694793e-11" "2" "0.0164411623758100" "Glycan Biosynthesis and Metabolism" "KEGG" "16" "1.31254854514697e-10" "2" "0.0374403339577377" "Phenylalanine metabolism" "KEGG" "14" "5.66949604576033e-09" "7" "5.86933080803002e-06" "Prostaglandin and leukotriene metabolism" "KEGG" "14" "1.09543148989161e-13" "7" "6.15286442550809e-07" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "14" "5.26208119285779e-08" "7" "1.54698202579956e-05" "Phenylpropanoid Metabolism" "BioPath" "12" "0.0111448309538724" "3" "0.0498807607163982" "pectin metabolism" "BioPath" "11" "2.35805476038181e-05" "4" "0.00632944999878192" "flavonol biosynthesis" "AraCyc" "11" "4.35960909990466e-19" "2" "6.9909341330487e-05" "Glucosyltransferases for benzoic acids" "BioPath" "10" "8.18621346794815e-10" "1" "0.00484952223981089" "gibberellic acid biosynthesis" "TAIR-GO" "9" "6.20135958505388e-20" "1" "8.54208336035678e-05" "gibberellin biosynthesis" "AraCyc" "9" "1.66082588041038e-14" "1" "0.00109833226263829" "STRESS DATA SET" "quantDE" "1.766528" "maxDE" "4.542196" "STRESS DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "18.5" "1.25159659887953e-06" "4" "0.0315758694127779" "C-compound and carbohydrate metabolism" "FunCat" "15" "4.31446184388203e-06" "3" "0.0401031411817628" "Fructose and mannose metabolism" "KEGG" "12" "2.76091470350563e-12" "2" "0.000935221622370209" "trehalose biosynthesis" "TAIR-GO" "9" "1.67089892778105e-27" "1" "3.11574526289879e-06" "trehalose biosynthesis I" "AraCyc" "9" "4.47696740277232e-10" "1" "0.00929490453896108" "trehalose biosynthesis II" "AraCyc" "9" "1.73405894656331e-11" "1" "0.0047715200537079" "trehalose biosynthesis III" "AraCyc" "9" "1.16334260573457e-13" "1" "0.00169084333417396" "energy" "FunCat" "9" "5.88040438131681e-21" "1" "7.3955992047833e-05" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "9" "1.37267599073618e-25" "1" "0" "cellulose biosynthesis" "BioPath" "8" "3.76133557831389e-07" "1" "0.0256964125713929" "hemicellulose biosynthesis" "BioPath" "8" "3.39487891313507e-10" "1" "0.00342386711763852" "Glycan Biosynthesis and Metabolism" "KEGG" "8" "7.05537925363646e-07" "1" "0.0299862350987213" "Glycerolipid metabolism" "KEGG" "8" "3.23199857555651e-08" "1" "0.00875325752508268" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "8" "6.03036018633171e-09" "2" "0.000812447772913665" "terpenoid metabolism" "LitPath" "8" "6.33981042150269e-09" "2" "0.000894445609902415" "pectin metabolism" "BioPath" "6.5" "0.00113765784290074" "2" "0.0480678275219121" "HORMONE DATA SET" "quantDE" "2.035312" "maxDE" "4.1467964" "HORMONE DATA SET" "Ribosome" "KEGG" "46" "9.23613733394252e-06" "9" "0.00597458765519765" "protein synthesis" "FunCat" "26" "2.39698515955006e-07" "5" "0.00591644933895096" "Nucleotide Metabolism" "KEGG" "24" "7.28590719874194e-09" "3" "0.0318868779089569" "Purine metabolism" "KEGG" "24" "3.52888807760671e-10" "3" "0.0146231009593016" "Intermediary Carbon Metabolism" "BioPath" "22" "4.75451241765843e-07" "4" "0.0115789598964641" "colanic acid building blocks biosynthesis" "AraCyc" "22" "6.80074684765912e-08" "5" "0.00107900166042628" "Fructose and mannose metabolism" "KEGG" "20.5" "9.07038298212853e-09" "5" "7.27657646280933e-05" "acetate fermentation" "AraCyc" "19" "5.49069740675921e-05" "3" "0.0556609306741864" "fructose degradation (anaerobic)" "AraCyc" "19" "2.39392230895983e-05" "3" "0.0440578718984565" "glycolysis IV" "AraCyc" "19" "2.66654399748336e-05" "3" "0.0462575184534811" "sorbitol fermentation" "AraCyc" "19" "6.0604109691644e-05" "3" "0.0508385168531538" "Gluconeogenesis from lipids in seeds" "BioPath" "18" "7.94993840891916e-10" "3" "0.00285353111131889" "GDP-D-rhamnose biosynthesis" "AraCyc" "18" "1.07306549828424e-16" "3" "8.31467498128684e-05" "de novo biosynthesis of purine nucleotides I" "AraCyc" "16" "0.00381874269509458" "2" "0.282374747935044" "de novo biosynthesis of purine nucleotides II" "AraCyc" "16" "1.53111475136806e-08" "2" "0.037345633607247" "formaldehyde assimilation I (serine pathway)" "AraCyc" "16" "7.40388928877323e-07" "2" "0.0320862149186559" "gluconeogenesis" "AraCyc" "16" "0.000100397263347823" "2" "0.0696868741985826" "serine-isocitrate lyase pathway" "AraCyc" "16" "0.000138023941822764" "2" "0.0696868741985826" "amino acid metabolism" "FunCat" "16" "0.0165310927107625" "2" "0.160098994220960" "Alanine and aspartate metabolism" "KEGG" "16" "2.01567607675069e-08" "2" "0.0125912890359431" "nucleotide metabolism" "FunCat" "15" "0" "2" "0" "purine nucleotide metabolism" "FunCat" "15" "6.65147135555352e-12" "2" "0.00255867569559878" "mannitol degradation" "AraCyc" "13" "2.26033010605607e-07" "2" "0.0152718387671360" "sorbitol degradation" "AraCyc" "13" "3.76819318243796e-07" "2" "0.0170029466375265" "GDP-carbohydrate biosynthesis" "BioPath" "12" "4.42824719763362e-15" "2" "7.50222724841033e-05" "tRNA charging pathway" "AraCyc" "12" "4.37767781185792e-05" "3" "0.0170172416047429" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "12" "0.0369350547100806" "2" "0.153602313981852" "Aminoacyl-tRNA biosynthesis" "KEGG" "12" "2.34917382175138e-07" "3" "0.00380145226537378" "Pyruvate metabolism" "KEGG" "12" "0.0313073066585551" "2" "0.106013526318665" "transport " "FunCat" "11" "1.04429221328411e-18" "2" "2.27886726623664e-06" "Oxidative phosphorylation" "KEGG" "11" "0.00442497383388525" "2" "0.109356175926847" "aspartate/ornithin cycle / nitric oxid from glutamate" "BioPath" "10" "8.87271037220665e-12" "1" "0.00668559644686802" "fatty acid beta oxidation complex" "BioPath" "10" "6.47861279240288e-09" "1" "0.0162388594577419" "de novo' GDP-L-fucose biosynthesis" "TAIR-GO" "10" "0" "1" "0" "fatty acid beta-oxidation" "TAIR-GO" "10" "1.45003886821112e-11" "1" "0.00191507432824642" "growth" "TAIR-GO" "10" "2.47304436935019e-06" "1" "0.0310006055130846" "L-fucose biosynthesis" "TAIR-GO" "10" "0" "1" "0" "unidimensional cell growth" "TAIR-GO" "10" "1.40817902253577e-08" "1" "0.00947301004978125" "acetyl-CoA assimilation" "AraCyc" "10" "0.00648690881960595" "1" "0.147608945370590" "aspartate degradation I" "AraCyc" "10" "0.00364965326586229" "1" "0.104783672535190" "aspartate degradation II" "AraCyc" "10" "5.59030727046658e-05" "1" "0.0442984449996083" "galactose degradation I" "AraCyc" "10" "5.08116841928237e-11" "3" "6.37948137181985e-06" "glyoxylate cycle" "AraCyc" "10" "0.00129536791853189" "1" "0.0849301398574101" "lactose degradation IV" "AraCyc" "10" "5.08116841928237e-11" "3" "6.37948137181985e-06" "mixed acid fermentation" "AraCyc" "10" "0.0040055222553444" "1" "0.170177298515814" "phenylalanine degradation I" "AraCyc" "10" "0.00096645012605991" "1" "0.111659202444674" "TCA cycle -- aerobic respiration" "AraCyc" "10" "0.0324252107206782" "1" "0.264363139261906" "TCA cycle variation II" "AraCyc" "10" "1.17148540132014e-05" "1" "0.049524542348688" "TCA cycle variation IV" "AraCyc" "10" "0.0281145132704592" "1" "0.248448000327575" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "2.62825536134295e-08" "1" "0.00877418655202488" "biogenesis of cell wall" "FunCat" "10" "0.00234564026460237" "1" "0.212943278733524" "C-compound and carbohydrate utilization " "FunCat" "10" "1.54932215807867e-18" "1" "0.000177409816676523" "nitrogen and sulfur utilization " "FunCat" "10" "2.52143942432225e-08" "1" "0.00903314335463157" "Citrate cycle (TCA cycle)" "KEGG" "10" "0.00223250256715070" "1" "0.138009457069981" "Cyanoamino acid metabolism" "KEGG" "10" "5.74841276547872e-06" "1" "0.0592189802836949" "Glycine, serine and threonine metabolism" "KEGG" "10" "0.000895505873024657" "2" "0.0189080434988786" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "0.000145843693160681" "1" "0.0724005126062834" "Nitrogen metabolism" "KEGG" "10" "0.00532162722085235" "1" "0.091275490409321" "Other replication, recombination and repair factors" "KEGG" "10" "1.16992740533465e-07" "2" "0.00223133079792115" "Phosphatidylinositol signaling system" "KEGG" "10" "0.000318204324403536" "2" "0.016206423443132" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "7.41146832503601e-06" "1" "0.0394472375606603" "Signal Transduction" "KEGG" "10" "0.000444327164792424" "2" "0.0175279056056473" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "10" "6.86854752211558e-07" "1" "0.069776644010251" "abscisic acid biosynthesis" "TAIR-GO" "9" "3.23775405699533e-09" "1" "0.00558336864623116" "adenosine salvage" "TAIR-GO" "9" "4.93083727759288e-16" "1" "0.000131380591918899" "nutrient import" "TAIR-GO" "9" "0" "1" "0" "pollen germination" "TAIR-GO" "9" "8.77043290441195e-14" "1" "0.000391327913002698" "eukaryotic plasma membrane / membrane attached " "FunCat" "9" "9.03634683869694e-16" "1" "0.000527671715497095" "transport ATPases" "FunCat" "9" "9.97090847462993e-05" "1" "0.0682059116068205" "transport facilitation" "FunCat" "9" "0" "1" "0.000527671715497095" "Thiamine metabolism" "KEGG" "9" "8.76351843009303e-10" "1" "0.0065700891499223" "dTDP-rhamnose biosynthesis" "AraCyc" "8" "0.0374865174507448" "2" "0.0624447586390463" "glucose conversion" "AraCyc" "8" "0.0234322032123848" "2" "0.0522902082309745" "UDP-glucose conversion" "AraCyc" "8" "0.0202278893602046" "2" "0.0491000381056857" "aminoacyl-tRNA-synthetases" "FunCat" "8" "3.46620501061797e-08" "2" "0.00161464207525179" "MUTANT DATA SET" "quantDE" "2.250269" "maxDE" "4.774755864" "MUTANT DATA SET" "Intermediary Carbon Metabolism" "BioPath" "10" "3.72430458330097e-07" "1" "0.0309366960529966" "glyoxylate cycle" "AraCyc" "10" "2.81731362090824e-11" "1" "0.00169161724700548" "TCA cycle variation VII" "AraCyc" "10" "3.23203614166432e-07" "1" "0.0150450708365401" "TCA cycle variation VIII" "AraCyc" "10" "8.26156645599473e-09" "1" "0.00756139900219308" "glycolysis and gluconeogenesis" "FunCat" "10" "3.14461552689051e-11" "1" "0.00139826134258639" "glyoxylate cycle" "FunCat" "10" "9.38645695014478e-29" "1" "6.1815267134677e-07" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "1.58643732075252e-18" "1" "4.98958654807467e-05" "Pyruvate metabolism" "KEGG" "10" "4.95955106827454e-14" "1" "0.000337391090393621" "fatty acid beta oxidation complex" "BioPath" "7" "8.70173676774111e-11" "1" "0.000647275396682748" "Gluconeogenesis from lipids in seeds" "BioPath" "7" "8.14698594006866e-07" "1" "0.00616348582948505" "fatty acid beta-oxidation" "TAIR-GO" "7" "0" "1" "0" "fatty acid oxidation pathway" "AraCyc" "7" "1.41315081284547e-07" "1" "0.00115024729044695" "isoleucine degradation I" "AraCyc" "7" "1.41315081284547e-07" "1" "0.00184262640053501" "isoleucine degradation III" "AraCyc" "7" "5.63882729398301e-10" "1" "0.000448655277160873" "leucine degradation I" "AraCyc" "7" "1.41315081284547e-07" "1" "0.00184262640053501" "leucine degradation II" "AraCyc" "7" "5.63882729398301e-10" "1" "0.000448655277160873" "valine degradation I" "AraCyc" "7" "1.1214162470075e-07" "1" "0.00368941453518291" "valine degradation II" "AraCyc" "7" "4.41229838023461e-10" "1" "0.000917573349059835" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "7" "0" "1" "0"