"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"125"	"28"	""	""
"ubiquinone biosynthesis"	"BioPath"	"32"	"4"	""	""
"ubiquinone biosynthesis"	"BioPath"	"32"	"4"	""	""
"ORGAN DATA SET"	"quantDE"	"4.230918"	"maxDE"	"7.485682"	"ORGAN DATA SET"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"44"	"3.05304916235346e-11"	"16"	"6.03485253449886e-05"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"29"	"9.93796817679232e-10"	"6"	"0.0262635945724769"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"22"	"5.36353971589955e-14"	"4"	"0.00041561342669466"
"fatty acid metabolism"	"TAIR-GO"	"22"	"6.27196491790469e-26"	"3"	"2.54638169618126e-05"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"20"	"0.000949099309055694"	"5"	"0.131004126200259"
"sexual reproduction"	"TAIR-GO"	"20"	"0"	"5"	"0"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"14"	"4.69778905919311e-09"	"3"	"0.00101029891925158"
"triacylglycerol degradation"	"AraCyc"	"14"	"5.87970294352115e-17"	"6"	"1.25999867196403e-07"
"C-compound and carbohydrate metabolism"	"FunCat"	"14"	"0.0268357230447970"	"3"	"0.302116350253401"
"polyisoprenoid biosynthesis"	"AraCyc"	"12"	"7.14467381321225e-17"	"3"	"3.21712044043161e-06"
"Galactose metabolism"	"KEGG"	"12"	"1.37909289809915e-11"	"2"	"0.000727169503240646"
"Starch and sucrose metabolism"	"KEGG"	"12"	"3.01977052384198e-07"	"3"	"0.00085255784690269"
"gibberellic acid catabolism"	"TAIR-GO"	"10"	"6.29411058912721e-16"	"1"	"0.000538059275367787"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"3.05346564101799e-11"	"1"	"0.00212618630684231"
"Gibberellin metabolism"	"LitPath"	"10"	"1.68183253718647e-07"	"1"	"0.0236115736548236"
"giberelin catabolism"	"LitPath"	"10"	"1.74882375163615e-17"	"1"	"0.000195498325231014"
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	"10"	"5.33052883274442e-08"	"1"	"0.0185205124992141"
"lignin biosynthesis"	"AraCyc"	"9"	"5.26916530147035e-07"	"4"	"2.07822733364683e-05"
"Phenylpropanoid pathway"	"LitPath"	"9"	"0.0113100608710130"	"4"	"0.00297121569799048"
"pectin metabolism"	"BioPath"	"8"	"0.00261625471857200"	"2"	"0.205750231639506"
"ubiquinone biosynthesis"	"BioPath"	"8"	"1.00591059488868e-14"	"1"	"0.000636782832250722"
"biosynthesis of proto- and siroheme"	"AraCyc"	"8"	"9.62751328473859e-07"	"1"	"0.0420225922864946"
"mevalonate pathway"	"AraCyc"	"8"	"4.86672058789362e-09"	"1"	"0.00977371842176333"
"metabolism of vitamins, cofactors, and prosthetic groups"	"FunCat"	"8"	"1.30826085971074e-15"	"1"	"0.00064413607344252"
"Oxidative phosphorylation"	"KEGG"	"8"	"1.54379804114853e-05"	"2"	"0.00855879304705953"
"Ubiquinone biosynthesis"	"KEGG"	"8"	"1.55396524856452e-12"	"1"	"0.00177820492416717"
"ubiquinone biosynthesis"	"LitPath"	"8"	"5.97514696255505e-13"	"1"	"0.00115458033922629"
"suberin biosynthesis"	"AraCyc"	"7"	"3.29744622682927e-07"	"3"	"9.61557874265952e-06"
"STRESS DATA SET"	"quantDE"	"0"	"maxDE"	"0"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"0"	"maxDE"	"0.9671594"	"HORMONE DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"18"	"6.30144525248456e-08"	"3"	"0.0114224930046461"
"RNA polymerase"	"KEGG"	"15"	"1.17569062992956e-16"	"2"	"0.000338327490575696"
"Transcription"	"KEGG"	"15"	"3.86576114520806e-13"	"2"	"0.00231508003891921"
"Fructose and mannose metabolism"	"KEGG"	"14"	"5.94599804897715e-13"	"2"	"0.000513223390307556"
"cellulose biosynthesis"	"BioPath"	"10"	"3.08073355272441e-10"	"1"	"0.00738883547180807"
"hemicellulose biosynthesis"	"BioPath"	"10"	"4.65484814843316e-14"	"1"	"0.000935827859638796"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"10"	"1.10085423745735e-07"	"1"	"0.0206969859084358"
"Glycerolipid metabolism"	"KEGG"	"10"	"2.60216590859767e-09"	"1"	"0.00595068710743455"
"DNA methylation"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nuclear heterochromatin"	"TAIR-GO"	"9"	"0"	"1"	"0"
"RNA interference, production of siRNA"	"TAIR-GO"	"9"	"0"	"1"	"0"
"MUTANT DATA SET"	"quantDE"	"1.349357"	"maxDE"	"8.367153456"	"MUTANT DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"87"	"1.25050564107948e-22"	"20"	"9.45757170869563e-06"
"pectin metabolism"	"BioPath"	"69"	"3.08274633012253e-45"	"17"	"2.47749286596485e-09"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"54"	"5.47251675020423e-15"	"17"	"0.000164404310697298"
"Starch and sucrose metabolism"	"KEGG"	"39"	"1.04600606234614e-22"	"6"	"3.81984646657283e-05"
"C-compound and carbohydrate metabolism"	"FunCat"	"36"	"0.000915288218696167"	"11"	"0.0127464808229996"
"Phenylpropanoid pathway"	"LitPath"	"29"	"1.18550146325094e-13"	"6"	"0.000109688737297683"
"biogenesis of cell wall"	"FunCat"	"24"	"1.56474267984406e-11"	"8"	"8.8824752486362e-06"
"core phenylpropanoid metabolism"	"BioPath"	"22"	"7.56921987715965e-09"	"3"	"0.0197182079959198"
"Galactose metabolism"	"KEGG"	"22"	"4.82316225661253e-16"	"3"	"0.000587031286046014"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"20"	"0.000269066750327786"	"3"	"0.0578308066301791"
"sexual reproduction"	"TAIR-GO"	"20"	"0"	"5"	"0"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"18"	"2.62375390316309e-08"	"3"	"0.00822035963992159"
"sucrose metabolism"	"BioPath"	"16"	"2.9789226119379e-10"	"2"	"0.00902970439187361"
"glycolysis and gluconeogenesis"	"FunCat"	"16"	"0.0310235732470821"	"4"	"0.120508543937182"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"16"	"0.0328902930141424"	"4"	"0.278490137394215"
"Glutamate/glutamine from nitrogen fixation"	"BioPath"	"14"	"2.90686046524193e-09"	"2"	"0.00294531643914252"
"fatty acid metabolism"	"TAIR-GO"	"14"	"2.99380911386566e-11"	"3"	"0.000183428897834360"
"long-chain fatty acid metabolism"	"TAIR-GO"	"14"	"1.27182198149238e-14"	"3"	"3.68537797482688e-05"
"very-long-chain fatty acid metabolism"	"TAIR-GO"	"14"	"5.47900917012842e-16"	"3"	"2.14865793478155e-05"
"lactose degradation IV"	"AraCyc"	"14"	"8.62602266340234e-21"	"4"	"3.63280680541191e-08"
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	"14"	"6.27294252860614e-08"	"2"	"0.0108059148191537"
"nitrogen and sulfur metabolism"	"FunCat"	"14"	"8.8722154191632e-08"	"2"	"0.00941186513313182"
"Glutamate metabolism"	"KEGG"	"14"	"6.33517152309346e-06"	"2"	"0.0171564555522170"
"Nitrogen metabolism"	"KEGG"	"14"	"1.37545595401888e-06"	"2"	"0.00761028076387182"
"Oxidative phosphorylation"	"KEGG"	"14"	"5.33144875380856e-06"	"3"	"0.0136767822048941"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"12"	"0.00990330773637907"	"2"	"0.0818853246163894"
"triacylglycerol degradation"	"AraCyc"	"12"	"4.26342007695551e-08"	"5"	"0.000352926244699426"
"C-compound and carbohydrate utilization "	"FunCat"	"12"	"1.32590841907486e-22"	"2"	"0"
"fatty acid biosynthesis"	"TAIR-GO"	"10"	"6.10483988580563e-09"	"1"	"0.0136543179521304"
"gibberellic acid catabolism"	"TAIR-GO"	"10"	"1.07132206777028e-13"	"1"	"0.00140134210189472"
"ammonia assimilation cycle"	"AraCyc"	"10"	"6.58792617586601e-09"	"1"	"0.0109230008544103"
"fatty acid oxidation pathway"	"AraCyc"	"10"	"6.21956833583889e-06"	"1"	"0.0461342700331058"
"glutamine biosynthesis I"	"AraCyc"	"10"	"1.71965876303722e-09"	"1"	"0.00652447967119145"
"nitrate assimilation pathway"	"AraCyc"	"10"	"6.03214988984727e-08"	"1"	"0.0134933225421013"
"octane oxidation"	"AraCyc"	"10"	"2.12182464873848e-07"	"1"	"0.0134933225421013"
"polyisoprenoid biosynthesis"	"AraCyc"	"10"	"1.61104663612841e-08"	"2"	"0.00184667591630494"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"10"	"0.00398135794520713"	"4"	"0.0019807776114372"
"lipid, fatty acid and isoprenoid utilization "	"FunCat"	"10"	"1.40958047592172e-16"	"1"	"0.00147110608908053"
"transport "	"FunCat"	"10"	"9.95888202568993e-16"	"3"	"0"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"5.73899403712103e-07"	"1"	"0.00982938256426323"
"Fatty acid metabolism"	"KEGG"	"10"	"0.000428641354630910"	"1"	"0.0698971449011255"
"Peptidoglycan biosynthesis"	"KEGG"	"10"	"5.76069171833801e-12"	"1"	"0.00157746098191157"
"Gibberellin metabolism"	"LitPath"	"10"	"9.45269022718248e-06"	"1"	"0.0336218561732317"
"giberelin catabolism"	"LitPath"	"10"	"1.72098891246117e-15"	"1"	"0.000286730877005487"
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	"10"	"3.20953704440059e-06"	"1"	"0.0264756546718478"
"cytokinin catabolism"	"TAIR-GO"	"9"	"1.20487863601747e-14"	"1"	"0.00140134210189472"
"cytokinins degradation"	"AraCyc"	"9"	"2.54753984552769e-13"	"1"	"0.000977474058451746"
"lignin biosynthesis"	"AraCyc"	"9"	"0.00430604520938326"	"4"	"0.00110891272908917"
"ubiquinone biosynthesis"	"BioPath"	"8"	"1.27068154485925e-10"	"1"	"0.00313104763392199"
"cuticle biosynthesis"	"TAIR-GO"	"8"	"5.79271234637646e-09"	"2"	"0.000328979775963747"
"atty acid elongation -- unsaturated"	"AraCyc"	"8"	"1.22495953198538e-05"	"2"	"0.00460382407944392"
"biosynthesis of proto- and siroheme"	"AraCyc"	"8"	"0.00372963107026489"	"1"	"0.171868402896448"
"fatty acid biosynthesis -- initial steps"	"AraCyc"	"8"	"0.00067812939632697"	"2"	"0.0198929731362666"
"fatty acid elongation -- saturated"	"AraCyc"	"8"	"2.358731116853e-05"	"2"	"0.00534581241933068"
"mevalonate pathway"	"AraCyc"	"8"	"4.28171351557898e-05"	"1"	"0.0461342700331058"
"mixed acid fermentation"	"AraCyc"	"8"	"0.000809026639180168"	"2"	"0.0252496921029862"
"C-compound, carbohydrate catabolism"	"FunCat"	"8"	"0.00117299668606093"	"2"	"0.0630649479389863"
"metabolism of vitamins, cofactors, and prosthetic groups"	"FunCat"	"8"	"5.27275532677612e-12"	"1"	"0.00289944856872793"
"transport ATPases"	"FunCat"	"8"	"0.00176359344906732"	"2"	"0.0338194140437413"
"transport facilitation"	"FunCat"	"8"	"0"	"2"	"1.08663061109577e-05"
"ATP synthesis"	"KEGG"	"8"	"0.00118075817634193"	"2"	"0.0141089935071610"
"Ubiquinone biosynthesis"	"KEGG"	"8"	"6.82865343286477e-09"	"1"	"0.00825854877924098"
"ubiquinone biosynthesis"	"LitPath"	"8"	"2.31717493383314e-11"	"1"	"0.00168667189796663"
"suberin biosynthesis"	"AraCyc"	"7"	"0.000784817889820157"	"3"	"0.000259225636347015"