"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "108" "38" "" "" "ORGAN DATA SET" "quantDE" "2.627123" "maxDE" "4.6735242" "ORGAN DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "64" "2.10264234774867e-37" "26" "4.18892009915485e-17" "Phenylalanine metabolism" "KEGG" "63" "4.52049166857184e-41" "26" "1.00452703767835e-18" "Methane metabolism" "KEGG" "58" "3.07867310442370e-44" "26" "1.19583535997450e-19" "Prostaglandin and leukotriene metabolism" "KEGG" "54" "1.65688425751333e-51" "25" "2.62308955613972e-21" "Cell Wall Carbohydrate Metabolism" "BioPath" "43" "1.04057510948417e-07" "11" "0.0283841059480350" "Phenylpropanoid Metabolism" "BioPath" "35" "8.20435509558375e-09" "10" "0.000431163302667145" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "35" "5.75874361791477e-17" "6" "0.00067608080797585" "terpenoid metabolism" "LitPath" "35" "6.98679225789827e-17" "6" "0.000832216070827106" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "32" "2.34517073935262e-05" "8" "0.00556024874075119" "Biosynthesis of steroids" "KEGG" "28" "3.99161259515143e-08" "5" "0.0068099211033013" "detoxification" "FunCat" "27" "0" "10" "0" "lactose degradation IV" "AraCyc" "22" "1.13804876001871e-37" "4" "2.34173508292335e-08" "pectin metabolism" "BioPath" "21" "3.48564431767863e-08" "8" "0.0023087594147412" "flavonol biosynthesis" "AraCyc" "21" "1.07656301178885e-22" "6" "1.77630852471665e-08" "Glucosyltransferases for benzoic acids" "BioPath" "20" "1.64369629818942e-17" "2" "0.00187177876441148" "triterpene biosynthesis" "LitPath" "20" "6.43000731056969e-14" "3" "0.00111767029715533" "monoterpenoid biosynthesis" "TAIR-GO" "19" "3.74808422811705e-32" "2" "5.58465618013243e-06" "monoterpene biosynthesis" "LitPath" "19" "3.63671250837388e-16" "2" "0.00127580972561712" "colanic acid building blocks biosynthesis" "AraCyc" "18" "6.21595408242298e-09" "3" "0.0138250034787813" "dTDP-rhamnose biosynthesis" "AraCyc" "18" "2.80996968063257e-11" "3" "0.0054650326952752" "galactose degradation I" "AraCyc" "18" "1.67424241645396e-28" "3" "2.44160044358560e-06" "glucose conversion" "AraCyc" "18" "6.19635610492035e-12" "3" "0.00420227889111483" "UDP-glucose conversion" "AraCyc" "18" "3.90543210631605e-12" "3" "0.0038298320283403" "secondary metabolism" "FunCat" "18" "5.17540725963313e-09" "5" "0.000806287070003109" "Fructose and mannose metabolism" "KEGG" "18" "4.66082191233040e-05" "2" "0.247481483752887" "Miscellaneous acyl lipid metabolism" "AcylLipid" "16" "0.000336011755000263" "7" "0.00180629578318849" "Flavonoid and anthocyanin metabolism" "BioPath" "15" "6.21911573652291e-09" "8" "7.95370769769327e-07" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "14" "4.57705663935415e-18" "2" "7.58197319349912e-05" "toxin catabolism" "TAIR-GO" "14" "4.1702167571343e-13" "7" "1.51941393689872e-08" "isoprenoid biosynthesis " "FunCat" "14" "0.000169290021351278" "3" "0.0271395747319183" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "14" "3.79924619306111e-05" "3" "0.0170251662223239" "Tryptophan metabolism" "KEGG" "13" "3.79792263649297e-05" "2" "0.133218017771401" "Tyrosine metabolism" "KEGG" "13" "0.00179901465678586" "2" "0.188017020439390" "cellulose biosynthesis" "BioPath" "12" "2.08460922537723e-05" "2" "0.0593445417081148" "Glycerolipid metabolism" "KEGG" "12" "0.00327789521177824" "2" "0.124707347194061" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "12" "5.27833277862166e-05" "2" "0.122302691281743" "detoxification involving cytochrome P450 " "FunCat" "11" "4.90876542455383e-15" "2" "0.00125675848830839" "Arginine and proline metabolism" "KEGG" "11" "0.0113591649495192" "2" "0.207435840987916" "GDP-carbohydrate biosynthesis" "BioPath" "10" "3.34093729604281e-10" "1" "0.0159168696769532" "fatty acid metabolism" "TAIR-GO" "10" "4.28532502781447e-07" "1" "0.033458630906592" "biosynthesis of secondary products derived from primary amino acids" "FunCat" "10" "1.95985626393057e-11" "2" "0.00125675848830839" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.00396243567806311" "1" "0.240681835750701" "Fluorene degradation" "KEGG" "10" "6.51626798426302e-05" "1" "0.106662610369736" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "0.000241931635349937" "1" "0.131697299942453" "fatty acid modulation" "LitPath" "10" "3.62028044204707e-11" "1" "0.00273697655323419" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "9" "3.14079596094615e-08" "1" "0.0179322553627892" "gibberellic acid biosynthesis" "TAIR-GO" "9" "1.13996182348716e-08" "1" "0.00677560369762283" "secondary cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "9" "3.65354611369726e-15" "1" "0.000777071169825264" "gibberellin biosynthesis" "AraCyc" "9" "8.37242104973922e-07" "1" "0.0164254357002434" "monoterpene biosynthesis" "AraCyc" "9" "1.16034456882084e-11" "1" "0.00082320670090821" "plant monoterpene biosynthesis" "AraCyc" "9" "6.14518885250925e-14" "1" "0.000277414332797827" "biosynthesis of amines" "FunCat" "9" "2.7242646621359e-15" "1" "0.000352553073558107" "transport " "FunCat" "9" "1.45100706783382e-14" "2" "6.45328362004243e-06" "transport facilitation" "FunCat" "9" "0" "2" "6.45328362004243e-06" "Alkaloid biosynthesis I" "KEGG" "9" "0.00329504062633266" "1" "0.198750231937937" "Alkaloid biosynthesis II" "KEGG" "9" "2.42520458310233e-06" "1" "0.0337146459031779" "beta-Alanine metabolism" "KEGG" "9" "0.000909779104511105" "1" "0.171348003094260" "Glycine, serine and threonine metabolism" "KEGG" "9" "0.0332859183674336" "1" "0.393673600721055" "Histidine metabolism" "KEGG" "9" "8.9375013369833e-05" "1" "0.157902927570025" "hemicellulose biosynthesis" "BioPath" "8" "1.37121334395617e-05" "1" "0.0393247484845716" "gluconeogenesis" "AraCyc" "8" "0.00941698969061925" "2" "0.0388280181916057" "C-compound, carbohydrate anabolism" "FunCat" "8" "4.52453188605054e-06" "2" "0.0050372765147947" "storage protein" "FunCat" "8" "3.81714108604897e-12" "2" "6.2803817027553e-05" "Terpenoid biosynthesis" "KEGG" "8" "0.0120260151671338" "2" "0.0472172859754162" "brassinosteroid modulation" "LitPath" "8" "2.61313084746159e-06" "4" "0.000299447438407543" "flavonoid, anthocyanin, and proanthocyanidin biosynthesis" "LitPath" "8" "0.0103474099487077" "2" "0.0168544561723447" "proanthocyanidin biosynthesis" "LitPath" "8" "0.0103474099487077" "2" "0.0168544561723447" "cation transport (Na, K, Ca , NH4, etc.) " "FunCat" "7" "7.51387832777934e-10" "1" "0.00104475265343424" "heavy metal ion transport (Cu, Fe, etc.)" "FunCat" "7" "4.01827459700624e-11" "1" "0.000352553073558107" "ion transport " "FunCat" "7" "0" "1" "0" "transported compounds (substrates)" "FunCat" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "1.100076" "maxDE" "6.378527" "STRESS DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "26" "2.53113889621034e-20" "7" "8.36805651657391e-07" "detoxification" "FunCat" "16" "0" "4" "0" "Methane metabolism" "KEGG" "16" "2.90519505801825e-13" "6" "2.87597289248697e-06" "Phenylalanine metabolism" "KEGG" "16" "4.67619962615535e-11" "6" "4.67039229011471e-06" "Prostaglandin and leukotriene metabolism" "KEGG" "16" "1.66439923813206e-16" "6" "6.30748721020614e-07" "flavonol biosynthesis" "AraCyc" "12" "3.28053012514639e-16" "2" "0.000134995487638140" "Glucosyltransferases for benzoic acids" "BioPath" "10" "2.11931901028905e-15" "1" "0.000220054939685328" "Intermediary Carbon Metabolism" "BioPath" "10" "7.49568173050263e-07" "1" "0.0309366960529966" "Phenylpropanoid Metabolism" "BioPath" "10" "4.15993061722652e-06" "1" "0.0367201012932586" "fatty acid metabolism" "TAIR-GO" "10" "6.67280039976249e-14" "1" "0.00152163571796117" "acetyl-CoA assimilation" "AraCyc" "10" "6.96857393743728e-09" "1" "0.0118837601801552" "glyoxylate cycle" "AraCyc" "10" "7.61903992926513e-10" "1" "0.0062366344265935" "leucine biosynthesis" "AraCyc" "10" "1.48868992097682e-13" "1" "0.0030244025839549" "serine-isocitrate lyase pathway" "AraCyc" "10" "1.26917725871359e-07" "1" "0.0227668220037768" "TCA cycle -- aerobic respiration" "AraCyc" "10" "8.11973028699883e-08" "1" "0.0247034992777185" "TCA cycle variation VII" "AraCyc" "10" "6.55910857124925e-06" "1" "0.0513450435020868" "TCA cycle variation VIII" "AraCyc" "10" "1.94185103651524e-07" "1" "0.0267058843104587" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "10" "1.17731818938614e-21" "1" "4.81023620169393e-05" "detoxification involving cytochrome P450 " "FunCat" "10" "3.69701563283381e-19" "1" "0.0010360389488876" "glyoxylate cycle" "FunCat" "10" "1.17731818938614e-21" "1" "4.81023620169393e-05" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "10" "1.88294141782558e-05" "1" "0.0643159892736769" "Ascorbate and aldarate metabolism" "KEGG" "10" "3.95877604139912e-08" "1" "0.0174567133318244" "Citrate cycle (TCA cycle)" "KEGG" "10" "7.46076167771872e-07" "1" "0.0439908397974237" "Fluorene degradation" "KEGG" "10" "2.22910379263717e-10" "1" "0.00643026833485082" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "1.08386837389341e-09" "1" "0.0082438581608715" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "2.70551599994679e-08" "1" "0.0216617886319222" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "9.0156679728106e-10" "1" "0.0113417698088287" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "10" "4.99182543794436e-06" "1" "0.103677465689947" "fatty acid modulation" "LitPath" "10" "0" "1" "0" "storage protein" "FunCat" "8" "7.61189036292961e-17" "2" "5.64999288014556e-07" "Lipid signaling" "AcylLipid" "8" "0.0475042272495478" "2" "0.102111824678854" "HORMONE DATA SET" "quantDE" "1.317571" "maxDE" "2.2058011" "HORMONE DATA SET" "Biosynthesis of steroids" "KEGG" "15" "5.97062198382422e-13" "3" "0.000180093930238792" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "11" "0.000386886726365964" "2" "0.066525883798806" "tryptophan catabolism" "TAIR-GO" "10" "2.26323901023171e-27" "1" "3.11574526289879e-06" "glucosinolate biosynthesis from tryptophan" "AraCyc" "10" "3.87232053717851e-20" "1" "4.50635939720551e-05" "IAA biosynthesis" "AraCyc" "10" "3.60938283254471e-14" "1" "0.00097073773540644" "IAA biosynthesis I" "AraCyc" "10" "6.86963894416153e-16" "1" "0.000533222372235784" "Glucosinolate Metabolism" "LitPath" "10" "1.52252957452069e-06" "1" "0.0292215846132257" "storage protein" "FunCat" "8" "3.6046661254324e-18" "2" "1.10468992029791e-06" "Methane metabolism" "KEGG" "8" "1.81377616161842e-07" "4" "0.000131986909308995" "Phenylalanine metabolism" "KEGG" "8" "2.55022624775440e-06" "4" "0.000185465466740582" "Prostaglandin and leukotriene metabolism" "KEGG" "8" "3.86332961342336e-09" "4" "4.55969408546602e-05" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "8" "9.8812025439194e-06" "4" "0.000340824852646605" "Terpenoid biosynthesis" "KEGG" "8" "6.01482187649148e-09" "2" "0.000332531099390217" "Lipid signaling" "AcylLipid" "8" "0.000199388079825462" "2" "0.0499101663881048" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "6.48202270830266e-14" "1" "8.68853042407226e-05" "secondary metabolism" "FunCat" "7" "1.51083817912518e-06" "1" "0.0367986780366374" "triterpene biosynthesis" "LitPath" "7" "3.0670410581315e-07" "1" "0.00825784140692201" "MUTANT DATA SET" "quantDE" "1.533449" "maxDE" "3.363719914" "MUTANT DATA SET" "Pyruvate metabolism" "KEGG" "16" "1.43971938133587e-08" "4" "0.000158121812836225" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "14" "7.614806569781e-05" "2" "0.0348525403936415" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "14" "1.24756395111033e-14" "2" "0.000268474326346317" "Butanoate metabolism" "KEGG" "12" "7.2605109486553e-11" "3" "2.82158992462047e-05" "core phenylpropanoid metabolism" "BioPath" "10" "9.70348475502496e-08" "1" "0.0166810832825348" "Phenylpropanoid Metabolism" "BioPath" "10" "0.00612673231173744" "1" "0.180307976009156" "lignin biosynthesis" "TAIR-GO" "10" "3.94509968020638e-20" "1" "5.59499508861388e-05" "lignin biosynthesis" "AraCyc" "10" "2.74724812018801e-09" "1" "0.00857057793574932" "methionine and S-adenosylmethionine synthesis" "AraCyc" "10" "1.36570992029114e-18" "1" "0.000145724063778155" "methionine degradation I" "AraCyc" "10" "5.36757701020544e-16" "1" "0.000433968630215381" "amino acid metabolism" "FunCat" "10" "1.01520684203489e-07" "1" "0.0334766868558988" "C-compound and carbohydrate metabolism" "FunCat" "10" "4.58651831757583e-05" "3" "0.00444554920262782" "Fatty acid metabolism" "KEGG" "10" "2.62416416262982e-06" "2" "0.00190490612114813" "Glycolysis / Gluconeogenesis" "KEGG" "10" "0.000294557056274334" "3" "0.00230893517407949" "Methionine metabolism" "KEGG" "10" "4.38933361076052e-09" "1" "0.0093697246935312" "Selenoamino acid metabolism" "KEGG" "10" "4.91197240681325e-07" "1" "0.0204883305312705" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "10" "6.94077607385141e-05" "1" "0.167319231862235" "Phenylpropanoid pathway" "LitPath" "10" "5.72231570938898e-07" "1" "0.0371105875020183" "Lipid signaling" "AcylLipid" "8" "0.00417559407257153" "2" "0.102111824678854"