"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN TWO DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Ribosome"	"KEGG"	"108"	"21"	""	""
"transport "	"FunCat"	"48"	"12"	""	""
"transport facilitation"	"FunCat"	"44"	"11"	""	""
"transported compounds (substrates)"	"FunCat"	"16"	"3"	""	""
"ORGAN DATA SET"	"quantDE"	"0.9830275"	"maxDE"	"2.4638809"	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	"0.5458846"	"maxDE"	"3.914561"	"STRESS DATA SET"
"Ribosome"	"KEGG"	"12"	"0"	"2"	"0"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"10"	"0.00218860375569018"	"5"	"0.0019141983890274"
"Leaf Glycerolipid Biosynthesis"	"BioPath"	"8"	"4.76346857930549e-07"	"1"	"0.00428165927311644"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"8"	"3.47848140126361e-11"	"1"	"0.000454024862128352"
"fatty acid biosynthesis"	"TAIR-GO"	"8"	"0"	"1"	"0"
"isoprenoid biosynthesis "	"FunCat"	"8"	"9.44401737893804e-07"	"1"	"0.00537625701681999"
"lipid transport "	"FunCat"	"8"	"1.65774668485075e-16"	"1"	"8.60975198782746e-05"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"8"	"3.08726556190583e-07"	"1"	"0.00407639528699253"
"transport "	"FunCat"	"8"	"5.78956009120127e-19"	"1"	"9.26434976613799e-06"
"transport facilitation"	"FunCat"	"8"	"0"	"1"	"9.26434976613799e-06"
"transported compounds (substrates)"	"FunCat"	"8"	"0"	"1"	"0"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"0.000115688151216692"	"1"	"0.0968844791342305"
"HORMONE DATA SET"	"quantDE"	"0.8808267"	"maxDE"	"1.5235817"	"HORMONE DATA SET"
"MUTANT DATA SET"	"quantDE"	"1.071173"	"maxDE"	"6.133110475"	"MUTANT DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"169.5"	"8.36962194173879e-12"	"57"	"1.45103281438578e-06"
"C-compound and carbohydrate metabolism"	"FunCat"	"97"	"0.0228812250240738"	"25"	"0.108991766850591"
"Ribosome"	"KEGG"	"96"	"0.00294428524659224"	"19"	"0.288519361326471"
"pectin metabolism"	"BioPath"	"88.5"	"1.45437840431439e-21"	"41"	"1.94173199198454e-11"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"86"	"0.0213105285648634"	"16"	"0.42944829212961"
"Phenylpropanoid Metabolism"	"BioPath"	"81"	"0.0327765082842527"	"14"	"0.699335424417604"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"60"	"7.24398126352452e-07"	"10"	"0.0349332081992169"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"53"	"0.0378247964952341"	"12"	"0.102328180431618"
"Lipid signaling"	"AcylLipid"	"49"	"0.0297530878002854"	"11"	"0.276612931590128"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"48"	"1.77542188318882e-10"	"9"	"0.00496322465885636"
"terpenoid metabolism"	"LitPath"	"48"	"2.20741174772825e-10"	"9"	"0.00641424320822266"
"Nucleotide Metabolism"	"KEGG"	"45"	"4.96668434256893e-08"	"8"	"0.0749451339449478"
"Purine metabolism"	"KEGG"	"43"	"4.38244559208315e-09"	"8"	"0.0201254852379851"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"40"	"9.95888640299448e-05"	"7"	"0.0548094822499005"
"transport "	"FunCat"	"40"	"0"	"11"	"0"
"Starch and sucrose metabolism"	"KEGG"	"39"	"0.000422829217771794"	"10"	"0.0125971123396314"
"transport facilitation"	"FunCat"	"36"	"0"	"10"	"0"
"nucleotide metabolism"	"FunCat"	"34"	"0"	"7"	"0"
"brassinosteroid biosynthesis"	"LitPath"	"33"	"0.000357110194612796"	"4"	"0.142156698601451"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"32"	"0.0161396915050179"	"4"	"0.621520110684854"
"biogenesis of cell wall"	"FunCat"	"32"	"0.000484184470968042"	"12"	"0.000947227540799295"
"intracellular signalling"	"FunCat"	"30.5"	"6.4551540114071e-06"	"8"	"0.0233171090095385"
"trans-zeatin biosynthesis"	"AraCyc"	"30"	"3.3438933338901e-29"	"6"	"7.84213688345702e-08"
"Biosynthesis of steroids"	"KEGG"	"30"	"0.00534946437645357"	"6"	"0.0358310019701020"
"Pyruvate metabolism"	"KEGG"	"30"	"0.0351060537324787"	"6"	"0.224402826661263"
"Translation factors"	"KEGG"	"28"	"0.00552116150483379"	"10"	"0.0322341061323841"
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	"28"	"2.06160229055372e-05"	"4"	"0.0404727566045245"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"27"	"0.000246045096602618"	"6"	"0.27393288180433"
"lipases pathway"	"AraCyc"	"27"	"1.51614710008566e-08"	"5"	"0.0095824175375613"
"cellulose biosynthesis"	"BioPath"	"26"	"0.0129208603501832"	"6"	"0.135174396598365"
"Citrate cycle (TCA cycle)"	"KEGG"	"26"	"7.40513042383668e-05"	"4"	"0.148030399210793"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"26"	"0.00184475216363648"	"3"	"0.343286149615693"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"26"	"0.02512305915116"	"5"	"0.306426478018033"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"25"	"7.22727356334587e-20"	"4"	"3.75925294425626e-05"
"Cyanoamino acid metabolism"	"KEGG"	"25"	"2.56102419682663e-10"	"6"	"0.00110875709166677"
"sterol biosynthesis"	"BioPath"	"24"	"0.00415247198301237"	"3"	"0.236014608936085"
"acetate fermentation"	"AraCyc"	"24"	"0.0376295506354618"	"7"	"0.120625413411172"
"alanine biosynthesis II"	"AraCyc"	"24"	"1.43732443669710e-08"	"4"	"0.031915998824002"
"chlorophyll biosynthesis"	"AraCyc"	"24"	"0.0202666373096219"	"8"	"0.011862987579312"
"phenylalanine biosynthesis II"	"AraCyc"	"24"	"2.32440550704034e-10"	"4"	"0.0189243261518372"
"TCA cycle -- aerobic respiration"	"AraCyc"	"24"	"0.00228638134938604"	"6"	"0.0523432151803817"
"TCA cycle variation IV"	"AraCyc"	"24"	"0.00167147870830238"	"6"	"0.0427301951605050"
"TCA cycle variation VIII"	"AraCyc"	"24"	"0.0070089957620498"	"6"	"0.0632165324193328"
"degradation "	"FunCat"	"24"	"7.32239242411096e-08"	"5"	"0.0123967012902985"
"Pyrimidine metabolism"	"KEGG"	"24"	"1.32291601558075e-05"	"5"	"0.0534799881907227"
"Transcription"	"KEGG"	"24"	"0.0247191418593667"	"8"	"0.0800114448704075"
"sterol and brassinosteroid biosynthesis"	"LitPath"	"24"	"0.00288925791697134"	"3"	"0.132787750930317"
"gibberellin biosynthesis"	"AraCyc"	"23"	"1.36548320820382e-10"	"5"	"9.21510364215564e-05"
"lipid, fatty acid and isoprenoid degradation"	"FunCat"	"23"	"2.24708967297325e-06"	"3"	"0.151175964378379"
"secondary metabolism"	"FunCat"	"23"	"0.0347155785724434"	"8"	"0.0387450916396773"
"aspartate/ornithin cycle / nitric oxid from glutamate"	"BioPath"	"22"	"2.77403482021464e-11"	"3"	"0.0385295231149441"
"sucrose degradation III"	"AraCyc"	"22"	"3.82100707004579e-10"	"5"	"0.000621080146599848"
"aromatic amino acid family biosynthesis"	"TAIR-GO"	"20"	"3.01159064886209e-10"	"2"	"0.0133715052995927"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"20"	"5.3089561321516e-12"	"2"	"0.00852600844599016"
"(deoxy)ribose phosphate degradation"	"AraCyc"	"20"	"6.66739231836329e-12"	"4"	"0.000646735434693969"
"biosynthesis of proto- and siroheme"	"AraCyc"	"20"	"0.0138756830092199"	"6"	"0.0271278759706429"
"de novo biosynthesis of purine nucleotides II"	"AraCyc"	"20"	"1.10007551516932e-05"	"4"	"0.108282364258607"
"mixed acid fermentation"	"AraCyc"	"20"	"0.00102045022921635"	"5"	"0.0389122164362262"
"triacylglycerol degradation"	"AraCyc"	"20"	"1.84784595208524e-05"	"9"	"0.00434014083607132"
"tyrosine biosynthesis I"	"AraCyc"	"20"	"3.17612982267883e-13"	"2"	"0.0233465161141837"
"pyrimidine nucleotide metabolism"	"FunCat"	"20"	"6.08291204502552e-09"	"4"	"0.00758522713314692"
"brassinosteroid biosynthesis"	"TAIR-GO"	"19"	"9.95786954205443e-10"	"2"	"0.00852600844599016"
"steroid biosynthesis"	"TAIR-GO"	"19"	"9.95786954205443e-10"	"2"	"0.00852600844599016"
"Phosphatidylinositol signaling system"	"KEGG"	"19"	"0.00132670386822067"	"4"	"0.0804734878568631"
"Signal Transduction"	"KEGG"	"19"	"0.00212931821472639"	"4"	"0.0888733765068205"
"proanthocyanidin biosynthesis"	"TAIR-GO"	"18"	"1.36806582631229e-22"	"2"	"4.94102224302023e-05"
"abscisic acid biosynthesis"	"AraCyc"	"18"	"2.06702126437276e-16"	"3"	"0.000132178035314698"
"glycerol degradation II"	"AraCyc"	"18"	"0.0368678832944465"	"5"	"0.106930695501637"
"non-phosphorylated glucose degradation"	"AraCyc"	"18"	"8.41010132753888e-06"	"5"	"0.0260848959783813"
"Terpenoid biosynthesis"	"KEGG"	"18"	"0.00026923396144009"	"3"	"0.0601168162124235"
"abscisic acid biosynthesis"	"LitPath"	"18"	"4.16832510750249e-07"	"3"	"0.0143786871507284"
"lactose degradation IV"	"AraCyc"	"17"	"8.77338539829658e-16"	"6"	"1.04568820852573e-08"
"peptidoglycan biosynthesis"	"AraCyc"	"17"	"2.01400076206735e-13"	"4"	"9.42543039483691e-05"
"plant / fungal specific systemic sensing and response "	"FunCat"	"17"	"0.00074077373687356"	"3"	"0.0537373299564873"
"plant hormonal regulation"	"FunCat"	"17"	"0.00074077373687356"	"3"	"0.0537373299564873"
"transcription"	"FunCat"	"17"	"4.76028765158487e-09"	"4"	"0.00297435808870334"
"cytokinin biosynthesis"	"TAIR-GO"	"16"	"3.61304374423411e-17"	"2"	"0.000192346937317573"
"biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	"16"	"4.79910119029775e-05"	"3"	"0.0823980226587484"
"de novo biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	"16"	"3.60502476171911e-05"	"3"	"0.0720289371868661"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"16"	"0.0337982124299017"	"4"	"0.202769142758846"
"sucrose biosynthesis"	"AraCyc"	"16"	"0.000350679766547554"	"3"	"0.0534505229874631"
"trehalose biosynthesis III"	"AraCyc"	"16"	"0.00589040556109177"	"4"	"0.0800125812912822"
"C-compound, carbohydrate catabolism"	"FunCat"	"16"	"0.0156941988576709"	"5"	"0.092394833069978"
"Ligand-Receptor Interaction"	"KEGG"	"16"	"0.00208785321570280"	"8"	"0.00711639652891452"
"RNA synthesis "	"FunCat"	"15"	"0.00406843440088203"	"3"	"0.151175964378379"
"Prolin/Hydroxyproline from glutamate"	"BioPath"	"14"	"3.5979202167756e-06"	"3"	"0.0109905568031201"
"jasmonic acid biosynthesis"	"TAIR-GO"	"14"	"0.000112141762295740"	"2"	"0.031161985829055"
"jasmonic acid biosynthesis"	"AraCyc"	"14"	"0.00734612506595154"	"2"	"0.139964192031865"
"sterol biosynthesis"	"AraCyc"	"14"	"0.0491714212625332"	"2"	"0.176119033988461"
"purine nucleotide metabolism"	"FunCat"	"14"	"0.00598490122877171"	"3"	"0.0735781902044088"
"Ion channels"	"KEGG"	"14"	"0.0090607704579039"	"7"	"0.0172875778360785"
"gibberellic acid biosynthesis"	"TAIR-GO"	"13"	"1.31088938578009e-05"	"2"	"0.00656835964594324"
"cell growth / morphogenesis "	"FunCat"	"13"	"3.39182573850819e-10"	"2"	"0.00406501849522894"
"second messenger mediated signal transduction"	"FunCat"	"13"	"1.50813985644092e-12"	"2"	"0.00172451533849908"
"Basal transcription factors"	"KEGG"	"13"	"0.00407055909500245"	"4"	"0.0888733765068205"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"12"	"0.0138871840146733"	"3"	"0.102311408429004"
"abscisic acid biosynthesis"	"TAIR-GO"	"12"	"1.24594991501571e-06"	"2"	"0.00490707213173088"
"anthocyanin biosynthesis"	"AraCyc"	"12"	"1.02730905659127e-05"	"2"	"0.0411277870039283"
"nitrogen and sulfur utilization "	"FunCat"	"12"	"0.0021716255915264"	"2"	"0.0473667339299873"
"Aminosugars metabolism"	"KEGG"	"12"	"0.000394730063117084"	"3"	"0.051887378696276"
"DNA polymerase"	"KEGG"	"12"	"1.38210354540924e-06"	"3"	"0.0206606003809794"
"brassinosteroid modulation"	"LitPath"	"12"	"1.24349922373430e-05"	"5"	"0.00409540890269537"
"response to UV"	"TAIR-GO"	"11"	"0.00041997068690214"	"2"	"0.0107909007429998"
"starch biosynthesis"	"AraCyc"	"11"	"0"	"2"	"0"
"protein degradation "	"FunCat"	"11"	"0.00614646916309834"	"3"	"0.0537373299564873"
"GDP-carbohydrate biosynthesis"	"BioPath"	"10"	"0.00301713620582992"	"2"	"0.0633730896460745"
"Lysin from aspartate"	"BioPath"	"10"	"1.09461596143539e-06"	"1"	"0.0757599621871479"
"trehalose metabolism"	"BioPath"	"10"	"0.000323383534539704"	"2"	"0.122114368150761"
"acyl-CoA binding"	"TAIR-GO"	"10"	"6.8289466425937e-12"	"1"	"0.00136469642514967"
"anther dehiscence"	"TAIR-GO"	"10"	"0"	"1"	"0"
"aromatic amino acid family biosynthesis, anthranilate pathway"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucosinolate biosynthesis"	"TAIR-GO"	"10"	"0.000129845520728297"	"1"	"0.0330345076972479"
"lipid transport"	"TAIR-GO"	"10"	"9.87677969189085e-07"	"1"	"0.025380051811014"
"monoterpenoid biosynthesis"	"TAIR-GO"	"10"	"7.8724351626707e-08"	"1"	"0.00779819072385965"
"oxygen binding"	"TAIR-GO"	"10"	"1.46862274684464e-11"	"1"	"0.00136469642514967"
"peptidyl-proline hydroxylation to 4-hydroxy-L-proline"	"TAIR-GO"	"10"	"4.35437664310310e-13"	"1"	"0.00136469642514967"
"pollen maturation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"0.000373301604897562"	"2"	"0.0107909007429998"
"response to biotic stimulus"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to hypoxia"	"TAIR-GO"	"10"	"4.35437664310310e-13"	"1"	"0.00136469642514967"
"sterol biosynthesis"	"TAIR-GO"	"10"	"0.0310694735549511"	"1"	"0.168817684941960"
"unidimensional cell growth"	"TAIR-GO"	"10"	"0.00149071627134120"	"1"	"0.0816666596916768"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"10"	"1.85359219792622e-05"	"1"	"0.0289697067957617"
"lysine biosynthesis I"	"AraCyc"	"10"	"0.00991529202468812"	"1"	"0.356284183121896"
"monoterpene biosynthesis"	"AraCyc"	"10"	"5.16188101742667e-07"	"1"	"0.015217466950529"
"plant monoterpene biosynthesis"	"AraCyc"	"10"	"1.98836989927809e-09"	"1"	"0.00533072154828064"
"biosynthesis of derivatives of dehydroquinic acid, shikimic acid and chorismic acid"	"FunCat"	"10"	"5.30075607057596e-12"	"1"	"0.0322000208771742"
"biosynthesis of lysine"	"FunCat"	"10"	"5.03444722115389e-08"	"1"	"0.0509566891318043"
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"10"	"0.0111750326072401"	"2"	"0.0881115123072566"
"energy"	"FunCat"	"10"	"1.60035801738654e-09"	"2"	"0.000457353573755974"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"2"	"0"
"metabolism of the aspartate family"	"FunCat"	"10"	"4.01008323125091e-05"	"1"	"0.122402157518372"
"Lysine biosynthesis"	"KEGG"	"10"	"0.000451576354103081"	"1"	"0.19800735196499"
"Membrane Transport"	"KEGG"	"10"	"0.00792580373690742"	"4"	"0.0148549098736119"
"Phe/Tyr biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"sequiterpene biosynthesis"	"LitPath"	"10"	"1.50427513417289e-06"	"1"	"0.0181856886537117"
"Tyr biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"cellular response to sulfate starvation"	"TAIR-GO"	"9"	"2.29366902365476e-10"	"1"	"0.00136469642514967"
"glucosinolate catabolism"	"TAIR-GO"	"9"	"2.29366902365476e-10"	"1"	"0.00136469642514967"
"pollen germination"	"TAIR-GO"	"9"	"1.61493348658375e-08"	"1"	"0.00399526883058861"
"IAA biosynthesis I"	"AraCyc"	"9"	"0.00638371033377324"	"1"	"0.136474679466415"
"Thiamine metabolism"	"KEGG"	"9"	"2.48237339164439e-05"	"1"	"0.100373357554181"
"Sequestration of phenylpropanoids (cytosol --> vacuole)"	"BioPath"	"8"	"2.40649977154892e-07"	"1"	"0.00921277892232249"
"Toc apparatus"	"BioPath"	"8"	"0.0298685101015598"	"2"	"0.081142902310911"
"fatty acid elongation"	"TAIR-GO"	"8"	"2.62054123572877e-05"	"1"	"0.025380051811014"
"long-chain fatty acid metabolism"	"TAIR-GO"	"8"	"0.0167011688965644"	"1"	"0.129587325468601"
"maintenance of dormancy"	"TAIR-GO"	"8"	"0"	"1"	"0"
"very-long-chain fatty acid metabolism"	"TAIR-GO"	"8"	"0.00465482154968727"	"1"	"0.104860740325460"
"wax biosynthesis"	"TAIR-GO"	"8"	"0.000136631348316981"	"1"	"0.025380051811014"
"leucine biosynthesis"	"AraCyc"	"8"	"0.0182436308475436"	"2"	"0.106750956422250"
"general transcription activities"	"FunCat"	"8"	"0.00811686601918727"	"2"	"0.0881115123072566"
"protein folding and stabilization "	"FunCat"	"8"	"5.3515737276038e-07"	"2"	"0.00406501849522894"
"sugar, glucoside, polyol and carboxylate catabolism "	"FunCat"	"8"	"0.0173586163967947"	"2"	"0.104108345455858"
"transported compounds (substrates)"	"FunCat"	"8"	"0"	"2"	"0"
"Folate biosynthesis"	"KEGG"	"8"	"0.0250224376551355"	"2"	"0.0928076473054193"
"calcium-mediated signaling"	"TAIR-GO"	"7"	"8.45076285874775e-08"	"1"	"0.00399526883058861"
"histone acetylation"	"TAIR-GO"	"7"	"0"	"1"	"0"
"photoreactive repair"	"TAIR-GO"	"7"	"6.58906679470628e-09"	"1"	"0.00136469642514967"
"secondary metabolism"	"TAIR-GO"	"7"	"0"	"1"	"0"
"transcription factor TFIID complex"	"TAIR-GO"	"7"	"0"	"1"	"0"
"galactose degradation I"	"AraCyc"	"7"	"0.00019352227612936"	"3"	"0.000821807227984731"
"C-compound and carbohydrate utilization "	"FunCat"	"7"	"6.18835812249882e-07"	"2"	"0"
"cytoskeleton"	"FunCat"	"7"	"0"	"1"	"0"
"directional cell growth (morphogenesis)"	"FunCat"	"7"	"4.05176382880376e-08"	"1"	"0.0169622681078366"
"RNA modification "	"FunCat"	"7"	"6.18835812249882e-07"	"1"	"0.00595899175178286"
"tRNA modification "	"FunCat"	"7"	"0"	"1"	"0"
"tRNA synthesis "	"FunCat"	"7"	"0.00117530918936164"	"1"	"0.096578833266813"