"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Photosystems "	"BioPath"	"878"	"132"	""	""
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"837"	"104"	""	""
"chlorophyll biosynthesis"	"AraCyc"	"650"	"74"	""	""
"chlorophyll biosynthesis"	"TAIR-GO"	"599"	"66"	""	""
"chlorophyll biosynthesis"	"LitPath"	"583"	"64"	""	""
"biogenesis of chloroplast"	"FunCat"	"554"	"84"	""	""
"photosynthesis"	"FunCat"	"527"	"81"	""	""
"photosynthesis"	"TAIR-GO"	"439"	"65"	""	""
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"436"	"50"	""	""
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"418"	"47"	""	""
"additional photosystem II components"	"BioPath"	"415"	"61"	""	""
"Porphyrin and chlorophyll metabolism"	"KEGG"	"370"	"43"	""	""
"glycolysis and gluconeogenesis"	"FunCat"	"370"	"61"	""	""
"Carbon fixation"	"KEGG"	"334"	"55"	""	""
"Photosynthesis"	"KEGG"	"295"	"53"	""	""
"transport "	"FunCat"	"278"	"48"	""	""
"Glycolysis / Gluconeogenesis"	"KEGG"	"269"	"41"	""	""
"Calvin cycle"	"AraCyc"	"220"	"45"	""	""
"photorespiration"	"AraCyc"	"212"	"44"	""	""
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"206"	"26"	""	""
"carotenoid biosynthesis"	"AraCyc"	"205"	"23"	""	""
"Carotenoid and abscisic acid metabolism"	"LitPath"	"203"	"25"	""	""
"Pentose phosphate pathway"	"KEGG"	"194"	"32"	""	""
"gluconeogenesis"	"AraCyc"	"191"	"30"	""	""
"photosystem I"	"TAIR-GO"	"188"	"23"	""	""
"photorespiration"	"TAIR-GO"	"182"	"36"	""	""
"acetate fermentation"	"AraCyc"	"178"	"35"	""	""
"carotenoid biosynthesis"	"TAIR-GO"	"177"	"20"	""	""
"Carotenoid biosynthesis"	"BioPath"	"174"	"20"	""	""
"carotenid biosynthesis"	"LitPath"	"174"	"20"	""	""
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"158"	"19"	""	""
"transport facilitation"	"FunCat"	"157"	"28"	""	""
"Glycine, serine and threonine metabolism"	"KEGG"	"136"	"24"	""	""
"Protein export"	"KEGG"	"133"	"18"	""	""
"photosystem II"	"TAIR-GO"	"127"	"15"	""	""
"mRNA processing in chloroplast"	"BioPath"	"126"	"26"	""	""
"energy"	"FunCat"	"116"	"20"	""	""
"Early light-inducible proteins"	"BioPath"	"114"	"15"	""	""
"light harvesting complex"	"BioPath"	"112"	"14"	""	""
"regulation of transcription"	"TAIR-GO"	"111"	"12"	""	""
"response to light"	"TAIR-GO"	"102"	"16"	""	""
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"100"	"26"	""	""
"glycosylglyceride desaturation pathway"	"AraCyc"	"98"	"11"	""	""
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"97"	"10"	""	""
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"93"	"15"	""	""
"lactose degradation IV"	"AraCyc"	"93"	"22"	""	""
"starch biosynthesis"	"AraCyc"	"90"	"11"	""	""
"starch biosynthesis"	"TAIR-GO"	"89"	"11"	""	""
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"86"	"9"	""	""
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"84"	"21"	""	""
"Delta-pH pathway"	"BioPath"	"82"	"10"	""	""
"xanthophyll cycle"	"TAIR-GO"	"78"	"8"	""	""
"xanthophyll cycle"	"AraCyc"	"78"	"8"	""	""
"carotene biosynthesis"	"TAIR-GO"	"76"	"8"	""	""
"glycine degradation I"	"AraCyc"	"74"	"17"	""	""
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"74"	"8"	""	""
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"70"	"7"	""	""
"serine biosynthesis"	"AraCyc"	"70"	"24"	""	""
"Transcriptional regulators (chloroplast)"	"BioPath"	"70"	"7"	""	""
"positive regulation of transcription"	"TAIR-GO"	"70"	"7"	""	""
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"70"	"12"	""	""
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"68"	"13"	""	""
"response to high light intensity"	"TAIR-GO"	"64"	"8"	""	""
"Plastocyanin"	"BioPath"	"60"	"6"	""	""
"chlorophyll catabolism"	"TAIR-GO"	"60"	"6"	""	""
"chlorophyll catabolism"	"LitPath"	"60"	"6"	""	""
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"58"	"7"	""	""
"photoinhibition"	"TAIR-GO"	"58"	"7"	""	""
"magnesium chelatase complex"	"TAIR-GO"	"58"	"7"	""	""
"Other ion-coupled transporters"	"KEGG"	"57"	"8"	""	""
"plastid organization and biogenesis"	"TAIR-GO"	"56"	"9"	""	""
"sucrose biosynthesis"	"TAIR-GO"	"56"	"7"	""	""
"Regulatory enzymes"	"BioPath"	"50"	"5"	""	""
"phosphate transport"	"TAIR-GO"	"48"	"7"	""	""
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"46"	"5"	""	""
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"40"	"4"	""	""
"protein binding"	"TAIR-GO"	"40"	"4"	""	""
"protein complex assembly"	"TAIR-GO"	"40"	"4"	""	""
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"40"	"4"	""	""
"xanthophyll metabolism"	"TAIR-GO"	"40"	"4"	""	""
"chlorophyll a biosynthesis"	"LitPath"	"40"	"4"	""	""
"carbohydrate biosynthesis"	"TAIR-GO"	"36"	"4"	""	""
"fatty acid desaturation"	"TAIR-GO"	"36"	"5"	""	""
"one-carbon compound metabolism"	"TAIR-GO"	"28"	"4"	""	""
"ORGAN DATA SET"	"quantDE"	"6.029628"	"maxDE"	"7.0159637"	"ORGAN DATA SET"
"Photosystems "	"BioPath"	"392"	"7.15607344319393e-120"	"61"	"7.82347443838971e-25"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"269"	"9.12201460156422e-45"	"35"	"1.0978209788271e-09"
"biogenesis of chloroplast"	"FunCat"	"207"	"1.70912335770749e-99"	"31"	"9.98146413571953e-19"
"Photosystem I"	"BioPath"	"163"	"4.83973614383958e-33"	"26"	"1.46760514426992e-08"
"Photosynthesis"	"KEGG"	"159"	"8.75829351200907e-136"	"28"	"5.51739631000317e-30"
"photosynthesis"	"FunCat"	"148"	"1.84774698026456e-74"	"24"	"6.18521487674344e-16"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"147"	"1.13952108024113e-41"	"17"	"2.76790535470649e-07"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"141"	"3.07276620601046e-57"	"16"	"1.23457829700971e-08"
"additional photosystem II components"	"BioPath"	"133"	"1.38898544935752e-30"	"21"	"5.2562065952507e-09"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"127"	"5.98724749097261e-80"	"15"	"2.15038322800098e-12"
"chlorophyll biosynthesis"	"AraCyc"	"116"	"5.09075807127409e-42"	"15"	"2.41141168751967e-05"
"glycolysis and gluconeogenesis"	"FunCat"	"109"	"2.11657321503037e-08"	"18"	"0.00665907481447982"
"transport "	"FunCat"	"108"	"0"	"18"	"0"
"photosystem I"	"TAIR-GO"	"98"	"0"	"12"	"0"
"Carbon fixation"	"KEGG"	"96"	"1.11054040786247e-21"	"15"	"8.64568127564782e-06"
"Photosystem II"	"BioPath"	"89"	"1.59877179523188e-09"	"12"	"0.00499234572083546"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"85"	"0.0355779675261889"	"10"	"0.282202984636976"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"72"	"7.46410438071437e-33"	"9"	"1.60603191235351e-06"
"Chlorophyll a/b binding proteins"	"BioPath"	"70"	"2.01111754337826e-15"	"9"	"0.000210052417215321"
"Glycolysis / Gluconeogenesis"	"KEGG"	"70"	"7.05320599014247e-07"	"11"	"0.00809479169894199"
"transport facilitation"	"FunCat"	"67"	"0"	"11"	"0"
"biosynthesis of proto- and siroheme"	"AraCyc"	"66"	"2.99831077084541e-16"	"10"	"0.00164062137127766"
"Folding, Sorting and Degradation"	"KEGG"	"66"	"0.0129006666284505"	"9"	"0.238152371399075"
"chlorophyll biosynthesis"	"TAIR-GO"	"65"	"1.48509438366531e-22"	"7"	"8.57744162258898e-05"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"65"	"3.70066682299057e-36"	"7"	"3.04416519279201e-06"
"photorespiration"	"AraCyc"	"64"	"3.14154913112808e-28"	"13"	"1.59237977716799e-06"
"Calvin cycle"	"AraCyc"	"62"	"2.04756980101921e-17"	"12"	"4.05796649309656e-05"
"photosynthesis"	"TAIR-GO"	"60"	"3.41315489122531e-18"	"8"	"0.000327338649275475"
"Glucosinolate Metabolism"	"LitPath"	"60"	"1.74895341275734e-12"	"6"	"0.00437848963830916"
"photosystem II"	"TAIR-GO"	"59"	"0"	"7"	"0"
"gluconeogenesis"	"AraCyc"	"59"	"1.98180252725426e-10"	"9"	"0.0111302444734954"
"acetate fermentation"	"AraCyc"	"58"	"2.19875430388556e-06"	"11"	"0.0336130292402912"
"fructose degradation (anaerobic)"	"AraCyc"	"58"	"2.85526688095405e-07"	"11"	"0.0193476918603559"
"glycolysis IV"	"AraCyc"	"58"	"3.73809134381733e-07"	"11"	"0.0217520866509957"
"sorbitol fermentation"	"AraCyc"	"58"	"2.78860136440689e-06"	"11"	"0.0272144214836042"
"Pentose phosphate pathway"	"KEGG"	"58"	"1.93735862275359e-15"	"9"	"0.000477512241494989"
"Protein export"	"KEGG"	"57"	"3.56801204074807e-24"	"8"	"0.000125753639355142"
"porphyrin biosynthesis"	"TAIR-GO"	"52"	"2.45255080658285e-23"	"7"	"4.12135616485263e-05"
"Biosynthesis of steroids"	"KEGG"	"52"	"0.000806015342566584"	"6"	"0.0439015539633846"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"52"	"6.75657027606395e-12"	"7"	"0.0017664307124833"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"52"	"3.85755931167655e-24"	"7"	"5.36111986654161e-05"
"glucosinolate biosynthesis"	"TAIR-GO"	"50"	"8.63150338217785e-25"	"5"	"8.42904175219334e-05"
"chlorophyll biosynthesis"	"LitPath"	"49"	"3.81545982905151e-22"	"5"	"0.000162846053797545"
"light harvesting complex"	"BioPath"	"48"	"0"	"6"	"0"
"Nitrogen metabolism"	"KEGG"	"48"	"1.24471755137347e-06"	"7"	"0.00148552407372425"
"Carotenoid biosynthesis"	"BioPath"	"46"	"2.93902463728315e-12"	"6"	"0.000433446150346986"
"carotenid biosynthesis"	"LitPath"	"46"	"4.31697915169765e-18"	"6"	"6.50021440394166e-05"
"Transcription (chloroplast)"	"BioPath"	"44"	"1.48710859878833e-21"	"5"	"9.14972286286378e-05"
"transcription initiation"	"TAIR-GO"	"44"	"2.69216757792666e-24"	"5"	"8.42904175219334e-05"
"carotenoid biosynthesis"	"AraCyc"	"44"	"3.98260104412161e-19"	"5"	"0.000138100215459348"
"mRNA processing in chloroplast"	"BioPath"	"42"	"2.54356468828157e-20"	"8"	"7.99609244083505e-06"
"Glycine, serine and threonine metabolism"	"KEGG"	"41"	"9.24558055108643e-07"	"7"	"0.00332149028276388"
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	"40"	"1.28863605055852e-30"	"4"	"9.49648874638336e-06"
"secondary metabolism"	"FunCat"	"40"	"0.00590560642126793"	"6"	"0.284972551611366"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"39"	"2.32674126878419e-12"	"6"	"0.00544422869815064"
"cysteine biosynthesis I"	"AraCyc"	"38"	"8.80665265151218e-05"	"9"	"0.00380768413318853"
"glycine biosynthesis I"	"AraCyc"	"38"	"1.95152280103612e-07"	"9"	"0.00800643877875837"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"38"	"3.48281022628866e-17"	"9"	"1.82232361807390e-05"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"37"	"0"	"4"	"0"
"glycosylglyceride desaturation pathway"	"AraCyc"	"37"	"0"	"4"	"0"
"Ion channels"	"KEGG"	"37"	"3.0657584243036e-09"	"6"	"0.0587526587502557"
"Ligand-Receptor Interaction"	"KEGG"	"37"	"7.19020176827713e-09"	"6"	"0.0701873181710341"
"protein biosynthesis"	"TAIR-GO"	"36"	"0"	"6"	"0"
"respiration"	"FunCat"	"36"	"9.40880483837203e-11"	"5"	"0.00119641410757338"
"electron transport"	"TAIR-GO"	"35"	"6.17140971253248e-05"	"5"	"0.0313401746114859"
"Early light-inducible proteins"	"BioPath"	"34"	"1.67007854703439e-15"	"5"	"9.14972286286378e-05"
"chlorophyll binding"	"TAIR-GO"	"34"	"2.37449010286578e-07"	"4"	"0.0165786433925397"
"photorespiration"	"TAIR-GO"	"34"	"0"	"5"	"0"
"response to light"	"TAIR-GO"	"34"	"0.0310853592172470"	"6"	"0.174764267164111"
"ATP synthase components"	"BioPath"	"32"	"3.2482626651881e-08"	"5"	"0.00178893170237093"
"photosystem I reaction center"	"BioPath"	"32"	"3.75992762940874e-16"	"7"	"2.84563199900682e-06"
"glycerol degradation II"	"AraCyc"	"32"	"0.018310518834377"	"5"	"0.287028383155677"
"aerobic respiration"	"FunCat"	"32"	"2.49312634190824e-08"	"4"	"0.00774274018441808"
"energy"	"FunCat"	"32"	"0"	"5"	"0"
"channel / pore class transport"	"FunCat"	"31"	"3.59634638095452e-16"	"4"	"0.00774274018441808"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"30"	"5.5844949040268e-10"	"3"	"0.00706958354906445"
"phospholipid desaturation pathway"	"AraCyc"	"30"	"1.57050556854706e-17"	"3"	"0.000443966889916798"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"30"	"1.58785056003645e-17"	"3"	"0.00247100675995339"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"30"	"4.74490795510105e-22"	"3"	"0.000350106488086319"
"Androgen and estrogen metabolism"	"KEGG"	"30"	"3.85092640113602e-21"	"3"	"0.000770749016672666"
"Benzoate degradation via hydroxylation"	"KEGG"	"30"	"7.83944174810315e-13"	"3"	"0.00388728975924058"
"Selenoamino acid metabolism"	"KEGG"	"30"	"0.00812975084011158"	"3"	"0.165405800454634"
"Sulfur metabolism"	"KEGG"	"30"	"0.000483095346756916"	"3"	"0.0685543806059903"
"photosynthetic electron transport"	"TAIR-GO"	"29"	"8.91769001671143e-17"	"4"	"0.000163814502707043"
"Ferredoxin"	"BioPath"	"28"	"4.82407778737268e-12"	"6"	"6.3274384002003e-05"
"Oxygen-evolving enhancer protein"	"BioPath"	"28"	"4.01498773881635e-17"	"4"	"9.64803180776254e-05"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"28"	"2.8823542779582e-06"	"3"	"0.0144513334688806"
"hypersensitive response"	"TAIR-GO"	"28"	"1.52295388887732e-12"	"3"	"0.0029877875467444"
"regulation of transcription"	"TAIR-GO"	"28"	"0"	"3"	"0"
"pentose-phosphate pathway "	"FunCat"	"28"	"1.80591559445129e-05"	"4"	"0.0337048590003565"
"lactose degradation IV"	"AraCyc"	"27"	"3.23813378769542e-27"	"6"	"9.15428643049585e-08"
"photosystem I subunit precursor"	"BioPath"	"26"	"0"	"5"	"0"
"calmodulin binding"	"TAIR-GO"	"26"	"1.24993251477998e-06"	"3"	"0.0697102558568548"
"fatty acid biosynthesis"	"TAIR-GO"	"26"	"0.0106362048204321"	"3"	"0.109040443812199"
"mannitol degradation"	"AraCyc"	"26"	"7.08581733069375e-06"	"6"	"0.00896620798009842"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"26"	"2.52703809817915e-12"	"5"	"0.00086926307594269"
"sorbitol degradation"	"AraCyc"	"26"	"1.59677665343654e-05"	"6"	"0.0112475016327893"
"Delta-pH pathway"	"BioPath"	"24"	"0"	"3"	"0"
"serine biosynthesis"	"AraCyc"	"24"	"3.85884853668271e-16"	"8"	"0"
"starch degradation"	"AraCyc"	"23"	"1.39044120075587e-05"	"4"	"0.0122534533661168"
"Ascorbate and aldarate metabolism"	"KEGG"	"23"	"0.0312024260756935"	"3"	"0.100381362090936"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"23"	"0.000366315435026212"	"3"	"0.0295347792780906"
"ascorbate glutathione cycle"	"AraCyc"	"22"	"0.000329720746789619"	"3"	"0.0668419804870238"
"formylTHF biosynthesis"	"AraCyc"	"22"	"6.56714772723663e-05"	"3"	"0.096133834197108"
"glycine degradation I"	"AraCyc"	"22"	"9.3239062520115e-14"	"5"	"6.02809364687181e-05"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"22"	"0.000863610696416925"	"3"	"0.0384544358468548"
"transported compounds (substrates)"	"FunCat"	"22"	"0"	"5"	"0"
"Cytochrome b6/f complex"	"BioPath"	"20"	"0.000423741516298278"	"2"	"0.158054069847293"
"Plastocyanin"	"BioPath"	"20"	"0"	"2"	"0"
"Transcriptional regulators (chloroplast)"	"BioPath"	"20"	"0"	"2"	"0"
"Translation (chloroplast)"	"BioPath"	"20"	"8.02004870421076e-06"	"4"	"0.00153327110920233"
"chlorophyll catabolism"	"TAIR-GO"	"20"	"3.606191160603e-12"	"2"	"0.00197106637122824"
"cysteine biosynthesis"	"TAIR-GO"	"20"	"3.606191160603e-12"	"2"	"0.00197106637122824"
"cytochrome b6f complex"	"TAIR-GO"	"20"	"2.52470393526027e-08"	"2"	"0.0294374585712255"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"0.00173858589972334"	"3"	"0.0533620674062963"
"photosynthetic water oxidation"	"TAIR-GO"	"20"	"0"	"2"	"0"
"positive regulation of transcription"	"TAIR-GO"	"20"	"1.24494952045886e-12"	"2"	"0.00197106637122824"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"20"	"9.14354454808701e-09"	"2"	"0.0251764088863934"
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"20"	"6.95800778544184e-05"	"3"	"0.0302646503368717"
"nucleotide metabolism"	"FunCat"	"20"	"0"	"4"	"0"
"Membrane Transport"	"KEGG"	"20"	"8.07795328156857e-05"	"3"	"0.0685543806059903"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"20"	"0.00349358961150301"	"2"	"0.166917639193867"
"chlorophyll catabolism"	"LitPath"	"20"	"1.21734492528753e-12"	"2"	"0.00170490710807076"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"20"	"8.8560025181716e-05"	"3"	"0.0155064597861845"
"Fluorene degradation"	"KEGG"	"19"	"0.00174274289910215"	"2"	"0.0879593352335904"
"Chloroplastic protein turnover"	"BioPath"	"18"	"0.00888410771691716"	"3"	"0.106902373413331"
"psbP family of thylakoid proteins"	"BioPath"	"18"	"1.56004213990581e-10"	"5"	"1.50898570774979e-05"
"Sec (secretory) pathway"	"BioPath"	"18"	"1.56894135870072e-13"	"3"	"0.000615614174143499"
"carotene biosynthesis"	"TAIR-GO"	"18"	"9.24408349925915e-11"	"2"	"0.00197106637122824"
"glycolipid biosynthesis"	"TAIR-GO"	"18"	"1.17304007538109e-07"	"2"	"0.00714813253402566"
"lipid biosynthesis"	"TAIR-GO"	"18"	"1.90914284659070e-05"	"2"	"0.0162126230589849"
"nonphotochemical quenching"	"TAIR-GO"	"18"	"0"	"2"	"0"
"photosynthesis light harvesting"	"TAIR-GO"	"18"	"0.000197191286027425"	"2"	"0.0680784212716961"
"photosynthesis light harvesting in photosystem I"	"TAIR-GO"	"18"	"9.55800093005115e-06"	"2"	"0.0468013905327493"
"cysteine biosynthesis II"	"AraCyc"	"18"	"0.00134344774594885"	"7"	"0.00113732523844465"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"18"	"9.58472111986813e-06"	"2"	"0.131862367077458"
"glycosylglyceride biosynthesis"	"AraCyc"	"18"	"0.000147437882386472"	"2"	"0.0251764088863934"
"starch biosynthesis"	"AraCyc"	"18"	"0"	"2"	"0"
"Other ion-coupled transporters"	"KEGG"	"18"	"1.21350989172487e-06"	"2"	"0.049822321424575"
"photoinhibition"	"TAIR-GO"	"17"	"4.57037006857932e-10"	"2"	"0.00197106637122824"
"photosystem II assembly"	"TAIR-GO"	"17"	"2.99511758092204e-13"	"2"	"0.00197106637122824"
"photosystem II stabilization"	"TAIR-GO"	"17"	"0"	"2"	"0"
"starch biosynthesis"	"TAIR-GO"	"17"	"0.00308855972977042"	"2"	"0.0468013905327493"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"16"	"1.98033837552835e-05"	"2"	"0.0162126230589849"
"carotenoid biosynthesis"	"TAIR-GO"	"16"	"0.01011177257167"	"2"	"0.0680784212716961"
"magnesium chelatase complex"	"TAIR-GO"	"16"	"0"	"2"	"0"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"16"	"9.41789063418363e-08"	"2"	"0.00714813253402566"
"proton transport"	"TAIR-GO"	"16"	"1.98033837552835e-05"	"2"	"0.0162126230589849"
"response to high light intensity"	"TAIR-GO"	"16"	"2.22000983373971e-09"	"2"	"0.00197106637122824"
"cyanate degradation"	"AraCyc"	"16"	"2.95442920464682e-08"	"4"	"0.00620660514812286"
"lipoxygenase pathway"	"AraCyc"	"16"	"0.00783651536672474"	"2"	"0.109112154174141"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"16"	"6.39342183056645e-05"	"4"	"0.00620660514812286"
"electron transport and membrane-associated energy conservation "	"FunCat"	"16"	"3.42040705013028e-06"	"2"	"0.0393393558054663"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"16"	"0"	"3"	"0"
"Cyanoamino acid metabolism"	"KEGG"	"16"	"0.0454965836288928"	"2"	"0.266430066886641"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"15"	"1.05770293966439e-08"	"2"	"0.00197106637122824"
"galactose degradation I"	"AraCyc"	"15"	"5.99963765059294e-09"	"4"	"0.000168128437330606"
"oxygen evolving complex"	"TAIR-GO"	"14"	"1.01562561254184e-09"	"2"	"0.00197106637122824"
"plastoquinone biosynthesis"	"AraCyc"	"14"	"5.86887680486903e-08"	"2"	"0.00361538027510997"
"vitamin E biosynthesis"	"AraCyc"	"14"	"0.00169666923613609"	"2"	"0.0251764088863934"
"transcription"	"FunCat"	"14"	"0.000631287139595093"	"2"	"0.122645430889481"
"transcriptional control"	"FunCat"	"14"	"0.0103616338404052"	"2"	"0.0844703516261586"
"phosphate transport"	"TAIR-GO"	"13"	"1.7619766166806e-06"	"2"	"0.00714813253402566"
"starch catabolism"	"TAIR-GO"	"13"	"2.24799816177354e-07"	"2"	"0.00197106637122824"
"ion channels"	"FunCat"	"13"	"0.0063152136898824"	"2"	"0.287098687079728"
"Plastoquinone biosynthesis"	"BioPath"	"12"	"0"	"2"	"0"
"ATP-dependent proteolysis"	"TAIR-GO"	"12"	"0.0165952024623372"	"3"	"0.0393565131028539"
"glycine decarboxylation via glycine cleavage system"	"TAIR-GO"	"12"	"0"	"2"	"0"
"plastid large ribosomal subunit"	"TAIR-GO"	"12"	"0"	"2"	"0"
"plastid organization and biogenesis"	"TAIR-GO"	"12"	"1.21133652162828e-05"	"2"	"0.00714813253402566"
"response to ethylene stimulus"	"TAIR-GO"	"12"	"0.0228207787733669"	"3"	"0.0883144943135904"
"RNA processing"	"TAIR-GO"	"12"	"0"	"2"	"0"
"accessory proteins of photosynthetic electron transport "	"FunCat"	"12"	"0"	"2"	"0"
"C-compound and carbohydrate utilization "	"FunCat"	"12"	"3.99410983755654e-12"	"2"	"0"
"electron / hydrogen transport "	"FunCat"	"12"	"4.55795788977706e-05"	"2"	"0.0114601842025192"
"protein targeting, sorting and translocation"	"FunCat"	"11"	"0.00391099605341268"	"2"	"0.0393393558054663"
"chlorophyll A apoprotein"	"BioPath"	"10"	"6.8415553433629e-05"	"1"	"0.0668955336713153"
"FtsH protease (many homologues / subcellular localization ambiguous)"	"BioPath"	"10"	"0"	"1"	"0"
"Other cell wall metabolism related enzymes"	"BioPath"	"10"	"0.000251387254152239"	"1"	"0.0249119117803521"
"Regulatory enzymes"	"BioPath"	"10"	"0.0136664915054194"	"1"	"0.0668955336713153"
"cell communication"	"TAIR-GO"	"10"	"0"	"1"	"0"
"chloroplast ATP synthase complex"	"TAIR-GO"	"10"	"1.79737200149962e-05"	"1"	"0.0157765761386880"
"chloroplast envelope"	"TAIR-GO"	"10"	"0"	"1"	"0"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"0.00154188025660742"	"1"	"0.0433875956736077"
"cysteine biosynthesis from serine"	"TAIR-GO"	"10"	"0"	"1"	"0"
"cytochrome b6f complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"extrinsic to photosynthetic water oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose metabolism"	"TAIR-GO"	"10"	"0.0250686228098458"	"1"	"0.121903349315993"
"glutathione metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"lipoic acid metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"0.0250686228098458"	"1"	"0.121903349315993"
"photosynthesis light harvesting in photosystem II"	"TAIR-GO"	"10"	"0.00769344224646965"	"1"	"0.121903349315993"
"photosynthesis, dark reaction"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photosynthetic electron transport in cytochrome b6/f"	"TAIR-GO"	"10"	"8.73521493255702e-08"	"1"	"0.0157765761386880"
"photosystem I reaction center"	"TAIR-GO"	"10"	"1.79737200149962e-05"	"1"	"0.0433875956736077"
"plastoquinone biosynthesis"	"TAIR-GO"	"10"	"1.79737200149962e-05"	"1"	"0.0157765761386880"
"protein binding"	"TAIR-GO"	"10"	"0.00367592320235631"	"1"	"0.121903349315993"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to chemical substance"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to gravity"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to stress"	"TAIR-GO"	"10"	"0.0144988245123265"	"1"	"0.0796270588131897"
"response to temperature"	"TAIR-GO"	"10"	"0.00111481566679379"	"1"	"0.0433875956736077"
"RNA binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"vitamin E biosynthesis"	"TAIR-GO"	"10"	"0.0175556679505896"	"1"	"0.0796270588131897"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"10"	"0.00407888367678681"	"1"	"0.051656271389802"
"homomethionine biosynthesis"	"AraCyc"	"10"	"0"	"1"	"0"
"peptidoglycan biosynthesis"	"AraCyc"	"10"	"0.00125607886511496"	"1"	"0.185069320045623"
"phenylpropanoid pathway, initial reactions"	"AraCyc"	"10"	"0.0228811841553785"	"1"	"0.0805121187477369"
"ribose degradation"	"AraCyc"	"10"	"0.00262796856689931"	"3"	"0.0249484170046334"
"salicylic acid biosynthesis"	"AraCyc"	"10"	"0.0385754908407189"	"1"	"0.113009316452432"
"xanthophyll cycle"	"AraCyc"	"10"	"6.02797536940937e-07"	"1"	"0.00986270060782723"
"ionic homeostasis "	"FunCat"	"10"	"0"	"1"	"0"
"Alkaloid biosynthesis II"	"KEGG"	"10"	"0.0251719107577861"	"1"	"0.108217072064635"
"Other translation factors"	"KEGG"	"10"	"0.0198185216740061"	"3"	"0.0429681000759355"
"Peptidoglycan biosynthesis"	"KEGG"	"10"	"0.00176501082091135"	"1"	"0.0445776099351594"
"chlorophyll a biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"oxylipin pathway"	"LitPath"	"10"	"1.10351723377738e-05"	"1"	"0.0144277764020488"
"phytol biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"calcium ion transport"	"TAIR-GO"	"9"	"3.91305433168225e-05"	"1"	"0.0157765761386880"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"cation transport"	"TAIR-GO"	"9"	"4.98338458840486e-07"	"1"	"0.0157765761386880"
"histidine biosynthesis"	"TAIR-GO"	"9"	"0.00115810637201404"	"1"	"0.0433875956736077"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine degradation III"	"AraCyc"	"9"	"1.25188129849603e-05"	"1"	"0.027635825832456"
"biosynthesis of extracellular lipids"	"LitPath"	"9"	"0"	"1"	"0"
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	"8"	"0.0108221047074552"	"2"	"0.0468013905327493"
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	"8"	"0"	"1"	"0"
"photosystem I antenna complex"	"TAIR-GO"	"8"	"0"	"1"	"0"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"8"	"8.53943452421237e-05"	"1"	"0.0157765761386880"
"sulfolipid biosynthesis"	"TAIR-GO"	"8"	"0.000279096301865469"	"1"	"0.0157765761386880"
"C-compound and carbohydrate transport "	"FunCat"	"8"	"2.68460264045085e-06"	"2"	"0.0026263227192983"
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"8"	"0"	"1"	"0"
"plastochinone and phylloquinone biosynthesis"	"LitPath"	"8"	"0.0290924962268978"	"3"	"0.0335744684228326"
"proton gradient regulation"	"BioPath"	"7"	"0"	"1"	"0"
"fatty acid desaturation"	"TAIR-GO"	"7"	"0.0164194050519582"	"1"	"0.0433875956736077"
"one-carbon compound metabolism"	"TAIR-GO"	"7"	"0.026186017382935"	"1"	"0.0796270588131897"
"signal sequence binding"	"TAIR-GO"	"7"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"2.423002"	"maxDE"	"4.910212"	"STRESS DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"211"	"6.10778542069479e-71"	"25"	"2.04152012551055e-10"
"C-compound and carbohydrate metabolism"	"FunCat"	"153"	"3.23618885510947e-21"	"27"	"0.000242704969683517"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"127"	"2.21920766658269e-64"	"15"	"4.45208079771917e-10"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"121"	"2.56724788180312e-52"	"14"	"2.88927842601282e-08"
"Intermediary Carbon Metabolism"	"BioPath"	"108"	"3.07069457594444e-06"	"15"	"0.168531298737279"
"Photosystems "	"BioPath"	"107"	"6.47065866622717e-10"	"18"	"0.000445138357246390"
"photosynthesis"	"FunCat"	"107"	"2.01973640086485e-65"	"17"	"1.65145443994063e-12"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"101"	"3.56431712214825e-85"	"11"	"6.22433573492133e-11"
"glycolysis and gluconeogenesis"	"FunCat"	"93"	"5.06900937979217e-20"	"14"	"0.00119754641035440"
"chlorophyll biosynthesis"	"AraCyc"	"92"	"6.78695338762188e-53"	"11"	"6.98480054914458e-06"
"biogenesis of chloroplast"	"FunCat"	"79"	"7.12753475595367e-25"	"13"	"2.32316995534321e-06"
"Glycolysis / Gluconeogenesis"	"KEGG"	"72"	"1.83595164459212e-25"	"10"	"0.000126948296069869"
"additional photosystem II components"	"BioPath"	"71"	"5.56265589241406e-18"	"12"	"4.03883553304154e-06"
"chlorophyll biosynthesis"	"TAIR-GO"	"65"	"3.05640884738515e-45"	"7"	"1.18506309534242e-07"
"Carbon fixation"	"KEGG"	"64"	"3.22554928092169e-23"	"10"	"2.52110041355204e-05"
"Pentose phosphate pathway"	"KEGG"	"63"	"3.82271301470749e-38"	"10"	"1.95773767500514e-07"
"Calvin cycle"	"AraCyc"	"61"	"2.00528869317164e-35"	"12"	"1.71374552577622e-08"
"chlorophyll biosynthesis"	"LitPath"	"59"	"3.94970141261063e-39"	"6"	"1.6735604793975e-06"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"51"	"1.00951076160705e-15"	"6"	"0.00210815130667768"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"48"	"4.18135574180664e-26"	"6"	"1.95001231370577e-05"
"Transcription (chloroplast)"	"BioPath"	"44"	"9.94728344464776e-36"	"5"	"1.46556430949430e-06"
"transcription initiation"	"TAIR-GO"	"44"	"1.20698848338225e-40"	"5"	"5.22932359260596e-07"
"biosynthesis of proto- and siroheme"	"AraCyc"	"42"	"1.61247121773782e-15"	"6"	"0.0039530028809762"
"Biosynthesis of steroids"	"KEGG"	"40"	"9.85135049065451e-09"	"4"	"0.0290237642755559"
"Carotenoid biosynthesis"	"BioPath"	"38"	"7.37426392209222e-18"	"4"	"0.000903645083945516"
"carotenoid biosynthesis"	"AraCyc"	"38"	"2.29181308971748e-26"	"4"	"6.45651117596064e-05"
"carotenid biosynthesis"	"LitPath"	"38"	"1.84930357274761e-15"	"4"	"0.00203040228451555"
"mRNA processing in chloroplast"	"BioPath"	"36"	"1.51769406957419e-25"	"8"	"1.77736743608467e-08"
"acetate fermentation"	"AraCyc"	"36"	"1.31279109243472e-07"	"6"	"0.0542976508482514"
"fructose degradation (anaerobic)"	"AraCyc"	"36"	"2.81857062867806e-08"	"6"	"0.0382190073455745"
"glycolysis I"	"AraCyc"	"36"	"0.0383762920830645"	"6"	"0.472643928219814"
"glycolysis IV"	"AraCyc"	"36"	"3.44412907375059e-08"	"6"	"0.0411463705849148"
"sorbitol fermentation"	"AraCyc"	"36"	"1.57530589321578e-07"	"6"	"0.0474304161189233"
"Fructose and mannose metabolism"	"KEGG"	"36"	"2.00133181292827e-10"	"5"	"0.00726963670996257"
"pentose-phosphate pathway "	"FunCat"	"33"	"8.05880359141367e-16"	"5"	"0.000599442060437449"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"32"	"3.57384708905185e-11"	"5"	"0.000998461777349362"
"porphyrin biosynthesis"	"TAIR-GO"	"30"	"1.91007499222486e-16"	"4"	"0.00036352175339076"
"gluconeogenesis"	"AraCyc"	"30"	"5.51351140987399e-07"	"4"	"0.0747255583692847"
"Photosynthesis"	"KEGG"	"30"	"1.05267258841456e-10"	"7"	"2.23500249063682e-05"
"regulation of transcription"	"TAIR-GO"	"28"	"0"	"3"	"0"
"Chlorophyll a/b binding proteins"	"BioPath"	"26"	"0.000295446966203086"	"3"	"0.0568242480255254"
"energy"	"FunCat"	"26"	"0"	"5"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"26"	"0"	"5"	"0"
"secondary metabolism"	"FunCat"	"26"	"0.00103331707427310"	"4"	"0.216725176018526"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"25"	"9.42482804467733e-20"	"7"	"3.87338878954378e-08"
"Early light-inducible proteins"	"BioPath"	"24"	"3.10169552328287e-14"	"3"	"0.00108571582954118"
"pentose-phosphate shunt"	"TAIR-GO"	"24"	"1.03560950063712e-12"	"3"	"0.00274353074198713"
"photosynthesis"	"TAIR-GO"	"24"	"4.1352272281615e-07"	"3"	"0.0192844025368420"
"Protein export"	"KEGG"	"24"	"7.8445545603587e-10"	"3"	"0.0227272875081389"
"starch degradation"	"AraCyc"	"23"	"2.68791638370234e-12"	"5"	"5.30917708302697e-05"
"mannitol degradation"	"AraCyc"	"22"	"4.75578484978905e-10"	"4"	"0.00730718535856396"
"sorbitol degradation"	"AraCyc"	"22"	"1.11923777260789e-09"	"4"	"0.00868298899320197"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"21"	"1.64727276214049e-10"	"4"	"0.000144503017970775"
"Delta-pH pathway"	"BioPath"	"20"	"6.18380810415893e-20"	"2"	"0.000483004130956383"
"Regulatory enzymes"	"BioPath"	"20"	"2.63052411509241e-16"	"2"	"0.000483004130956383"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"20"	"1.39923151250986e-07"	"2"	"0.0133122087746711"
"Transcriptional regulators (chloroplast)"	"BioPath"	"20"	"0"	"2"	"0"
"carotene biosynthesis"	"TAIR-GO"	"20"	"8.95700117314129e-21"	"2"	"0.000148923408205765"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"20"	"5.86893618016119e-17"	"2"	"0.000572443345623587"
"positive regulation of transcription"	"TAIR-GO"	"20"	"3.06915833401727e-20"	"2"	"0.000148923408205765"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"20"	"3.36781066134603e-10"	"2"	"0.0359626230133694"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"20"	"1.91773714307606e-06"	"2"	"0.046259316991833"
"phytochromobilin biosynthesis"	"LitPath"	"20"	"8.1949562194019e-07"	"2"	"0.0221691239959651"
"transport "	"FunCat"	"19"	"0"	"4"	"0"
"light harvesting complex"	"BioPath"	"18"	"5.45529218278011e-09"	"2"	"0.00807228322675826"
"psbP family of thylakoid proteins"	"BioPath"	"18"	"1.51366542494052e-16"	"5"	"2.24103280335293e-07"
"Sec (secretory) pathway"	"BioPath"	"18"	"9.98139796759877e-20"	"3"	"3.75609101460985e-05"
"Translation (chloroplast)"	"BioPath"	"18"	"9.31704966253154e-10"	"3"	"0.00108571582954118"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"17"	"0.00130433594867346"	"3"	"0.0568242480255254"
"carotenoid biosynthesis"	"TAIR-GO"	"17"	"4.58300870942910e-08"	"2"	"0.00684085543241765"
"photosystem I"	"TAIR-GO"	"17"	"8.03529740821035e-11"	"2"	"0.00444749217449166"
"starch biosynthesis"	"TAIR-GO"	"17"	"2.75531058343040e-08"	"2"	"0.00444749217449166"
"mRNA synthesis "	"FunCat"	"17"	"0.000123902647203711"	"2"	"0.173437678308992"
"RNA synthesis "	"FunCat"	"17"	"0.000123902647203711"	"2"	"0.173437678308992"
"transcription"	"FunCat"	"17"	"5.95166906558467e-10"	"2"	"0.035561146425951"
"transcriptional control"	"FunCat"	"17"	"6.86224084360968e-08"	"2"	"0.0232502683086611"
"chlorophyll binding"	"TAIR-GO"	"16"	"0.000111268938722552"	"2"	"0.0287286659172636"
"magnesium chelatase complex"	"TAIR-GO"	"16"	"0"	"2"	"0"
"response to high light intensity"	"TAIR-GO"	"16"	"1.9324722991565e-15"	"2"	"0.000148923408205765"
"response to light"	"TAIR-GO"	"16"	"0.0432136902070231"	"2"	"0.317238780405716"
"photorespiration"	"AraCyc"	"16"	"0.000286330449613632"	"5"	"0.00637064140955692"
"Glycerolipid metabolism"	"KEGG"	"16"	"0.0107465632933374"	"3"	"0.0348522511474140"
"Glycine, serine and threonine metabolism"	"KEGG"	"16"	"0.0061286684677279"	"3"	"0.0459944826142783"
"Membrane Transport"	"KEGG"	"15"	"1.13344162060631e-06"	"3"	"0.00859481116704077"
"plastid organization and biogenesis"	"TAIR-GO"	"14"	"1.28568729589112e-12"	"2"	"0.000572443345623587"
"cysteine biosynthesis II"	"AraCyc"	"14"	"1.13453319316123e-05"	"5"	"0.000761337164308738"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"14"	"0.000355756474906470"	"2"	"0.107454661742863"
"serine biosynthesis"	"AraCyc"	"14"	"7.89436122187496e-11"	"5"	"1.04664577787515e-07"
"nucleotide metabolism"	"FunCat"	"14"	"0"	"4"	"0"
"phosphate transport"	"TAIR-GO"	"13"	"2.63425169601216e-11"	"2"	"0.000572443345623587"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"13"	"3.6766329315531e-07"	"5"	"1.98301232906169e-05"
"protein targeting, sorting and translocation"	"FunCat"	"13"	"1.86126198665233e-07"	"2"	"0.00999638417478786"
"Other ion-coupled transporters"	"KEGG"	"13"	"1.37226986735683e-07"	"2"	"0.00920011680560888"
"plastid large ribosomal subunit"	"TAIR-GO"	"12"	"0"	"2"	"0"
"protein biosynthesis"	"TAIR-GO"	"12"	"0"	"2"	"0"
"biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	"12"	"0.000980074801773324"	"3"	"0.026404673123945"
"glycine degradation I"	"AraCyc"	"12"	"1.17687941852347e-08"	"3"	"0.000655459262698794"
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"12"	"0.000404109430419437"	"2"	"0.035561146425951"
"Other cell wall metabolism related enzymes"	"BioPath"	"10"	"1.53767235959598e-07"	"1"	"0.00618338621755756"
"Plastocyanin"	"BioPath"	"10"	"1.53767235959598e-07"	"1"	"0.00618338621755756"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"10"	"0.00756686642779258"	"1"	"0.0750522011000786"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"5.27848883991735e-07"	"1"	"0.00820813775130218"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"5.27848883991735e-07"	"1"	"0.00820813775130218"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose metabolism"	"TAIR-GO"	"10"	"2.15904450598001e-05"	"1"	"0.0254894668800977"
"glucosinolate biosynthesis"	"TAIR-GO"	"10"	"0.00691478797154716"	"1"	"0.0642505915739949"
"hypersensitive response"	"TAIR-GO"	"10"	"0.000177700976773655"	"1"	"0.0369122531488552"
"lipoic acid metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"2.15904450598001e-05"	"1"	"0.0254894668800977"
"photosynthesis light harvesting"	"TAIR-GO"	"10"	"0.000485331280028617"	"1"	"0.0642505915739949"
"photosynthesis, dark reaction"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photosystem II"	"TAIR-GO"	"10"	"4.19261789861609e-06"	"1"	"0.0254894668800977"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"10"	"7.74924206900229e-07"	"1"	"0.0158438321569808"
"phytochromobilin biosynthesis"	"TAIR-GO"	"10"	"5.27848883991735e-07"	"1"	"0.00820813775130218"
"protein binding"	"TAIR-GO"	"10"	"1.58907932579532e-06"	"1"	"0.0254894668800977"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"de novo biosynthesis of pyrimidine ribonucleotides"	"AraCyc"	"10"	"0.00725294668517595"	"2"	"0.096882924096917"
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	"10"	"3.54599828191689e-05"	"1"	"0.0230129978959707"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"10"	"9.64959613418493e-06"	"1"	"0.0333806722812873"
"lactose degradation IV"	"AraCyc"	"10"	"5.74484275455065e-08"	"2"	"0.00383787100424135"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"10"	"8.06903207949056e-09"	"1"	"0.0230129978959707"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"10"	"0.00200224435768733"	"4"	"0.00409798987018096"
"thiamine biosynthesis"	"AraCyc"	"10"	"1.32959014339159e-07"	"1"	"0.0333806722812873"
"xanthophyll cycle"	"AraCyc"	"10"	"1.36707963218492e-10"	"1"	"0.00254716796478005"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"protein modification "	"FunCat"	"10"	"0.00048101594480759"	"1"	"0.210267905441384"
"transport facilitation"	"FunCat"	"10"	"0"	"3"	"0"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"0.0149382829692800"	"1"	"0.0738213923726186"
"chlorophyll a biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"chlorophyll catabolism"	"LitPath"	"10"	"0.000116828382303375"	"1"	"0.0254272957129614"
"Toc apparatus"	"BioPath"	"9"	"0.0465599848744993"	"1"	"0.212991582760696"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"protein-chloroplast targeting"	"TAIR-GO"	"9"	"4.88752981552668e-05"	"1"	"0.0254894668800977"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"carbon monoxide dehydrogenase pathway"	"AraCyc"	"9"	"0.00574968998041526"	"4"	"0.0119520293042326"
"ribose degradation"	"AraCyc"	"9"	"1.50129765757171e-05"	"5"	"1.11453619562826e-05"
"superpathway of gluconate degradation"	"AraCyc"	"9"	"1.50129765757171e-05"	"5"	"8.13910414503053e-05"
"chloroplast transport "	"FunCat"	"9"	"0.00106508751143333"	"1"	"0.0968270698087226"
"transport routes "	"FunCat"	"9"	"0.0249457486088147"	"1"	"0.250699900505825"
"carotenoid degradation"	"LitPath"	"9"	"1.33286354444721e-10"	"1"	"0.0090363670329002"
"Tic apparatus"	"BioPath"	"8"	"0.00116770999156166"	"2"	"0.0200767644555418"
"nonphotochemical quenching"	"TAIR-GO"	"8"	"2.41420788067191e-07"	"1"	"0.00283532818923790"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"8"	"6.32296098284062e-08"	"1"	"0.00283532818923790"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"8"	"0.00228302121820779"	"1"	"0.137821088564058"
"starch biosynthesis"	"AraCyc"	"8"	"0"	"1"	"0"
"N-Glycan biosynthesis"	"KEGG"	"8"	"0.00862308177455587"	"1"	"0.147885817162853"
"Other translation factors"	"KEGG"	"8"	"0.000750060283929592"	"2"	"0.0333714963280933"
"Streptomycin biosynthesis"	"KEGG"	"8"	"0.00862308177455587"	"1"	"0.08512871542632"
"Ubiquinone biosynthesis"	"KEGG"	"8"	"0.000117869475681218"	"3"	"0.000537318344169569"
"plastochinone and phylloquinone biosynthesis"	"LitPath"	"8"	"0.00634904083871176"	"3"	"0.0151043099779927"
"proton gradient regulation"	"BioPath"	"7"	"0"	"1"	"0"
"fatty acid desaturation"	"TAIR-GO"	"7"	"6.08232830174476e-05"	"1"	"0.00820813775130218"
"one-carbon compound metabolism"	"TAIR-GO"	"7"	"0.000112397765788091"	"1"	"0.0158438321569808"
"photoinhibition"	"TAIR-GO"	"7"	"0.000112397765788091"	"1"	"0.00820813775130218"
"photomorphogenesis"	"TAIR-GO"	"7"	"3.55863684025256e-06"	"1"	"0.00820813775130218"
"photosynthetic electron transport"	"TAIR-GO"	"7"	"0.00318739938143401"	"1"	"0.0369122531488552"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"7"	"6.08232830174476e-05"	"1"	"0.00820813775130218"
"folate biosynthesis"	"AraCyc"	"7"	"0.0100110356836410"	"1"	"0.155673051191700"
"glycosylglyceride desaturation pathway"	"AraCyc"	"7"	"0.000469001344328192"	"1"	"0.0142809418350113"
"HORMONE DATA SET"	"quantDE"	"1.880294"	"maxDE"	"2.9887535"	"HORMONE DATA SET"
"C-compound and carbohydrate metabolism"	"FunCat"	"119"	"7.83346951697119e-14"	"22"	"0.000451822229858117"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"103"	"4.75840628076524e-16"	"12"	"0.00105849876312541"
"Photosystems "	"BioPath"	"88"	"7.74612149180935e-09"	"14"	"0.00130221958543899"
"Intermediary Carbon Metabolism"	"BioPath"	"86"	"4.22926061640135e-05"	"14"	"0.0455219313595629"
"photosynthesis"	"FunCat"	"74"	"1.23954021506405e-37"	"12"	"1.20769198603385e-08"
"biogenesis of chloroplast"	"FunCat"	"73"	"3.00307214127558e-25"	"10"	"3.29946267565028e-05"
"glycolysis and gluconeogenesis"	"FunCat"	"65"	"1.76744484088459e-10"	"12"	"0.00103072143663639"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"59"	"3.12938602810115e-34"	"7"	"1.71986868743915e-06"
"Carbon fixation"	"KEGG"	"56"	"7.06083952105504e-18"	"11"	"1.11943120539539e-06"
"additional photosystem II components"	"BioPath"	"55"	"2.39608893097401e-13"	"8"	"0.000356313031350407"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"49"	"1.49832299569737e-10"	"5"	"0.0121097341818226"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"49"	"1.59021984256402e-15"	"5"	"0.00212259097146777"
"Glycolysis / Gluconeogenesis"	"KEGG"	"48"	"8.367318661656e-11"	"7"	"0.0039571877120447"
"gluconeogenesis"	"AraCyc"	"44"	"1.24907139142628e-10"	"7"	"0.00966495743475807"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"43"	"0.00100663376390552"	"5"	"0.123071702345888"
"transport "	"FunCat"	"39"	"0"	"7"	"0"
"glycosylglyceride desaturation pathway"	"AraCyc"	"37"	"0"	"4"	"0"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"37"	"1.21326490391969e-27"	"4"	"2.88717800997387e-05"
"Carotenoid biosynthesis"	"BioPath"	"36"	"3.01339151824031e-19"	"4"	"0.000250442427265615"
"carotenoid biosynthesis"	"AraCyc"	"36"	"1.69584890547533e-19"	"4"	"0.000263586029801308"
"chlorophyll biosynthesis"	"AraCyc"	"36"	"4.1924589828439e-05"	"4"	"0.276102052210220"
"carotenid biosynthesis"	"LitPath"	"36"	"6.79618560205916e-24"	"4"	"4.60077835846823e-05"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"36"	"1.24791284321268e-15"	"4"	"0.00147885922986182"
"Calvin cycle"	"AraCyc"	"35"	"4.85756297137135e-09"	"9"	"0.000151348555240186"
"Photosynthesis"	"KEGG"	"35"	"2.35365203797235e-14"	"7"	"9.0679841843754e-06"
"Pentose phosphate pathway"	"KEGG"	"33"	"5.95263082547964e-12"	"6"	"0.000359708094177892"
"core phenylpropanoid metabolism"	"BioPath"	"32"	"0.00274302603580901"	"4"	"0.12895526107705"
"Early light-inducible proteins"	"BioPath"	"32"	"1.11075894176257e-26"	"4"	"1.38758315718213e-05"
"acetate fermentation"	"AraCyc"	"32"	"0.0023240047124371"	"7"	"0.0871906810652445"
"fructose degradation (anaerobic)"	"AraCyc"	"32"	"0.000872644269118424"	"7"	"0.0608776340338373"
"glycolysis IV"	"AraCyc"	"32"	"0.00099323125123528"	"7"	"0.0656812606042031"
"sorbitol fermentation"	"AraCyc"	"32"	"0.00260417964887752"	"7"	"0.0759760364823689"
"Glycine, serine and threonine metabolism"	"KEGG"	"32"	"2.44275066592305e-11"	"6"	"0.000153691354928833"
"Phenylpropanoid pathway"	"LitPath"	"32"	"0.0058588985759412"	"4"	"0.263495398506728"
"lignin biosynthesis"	"TAIR-GO"	"30"	"5.0965774832694e-19"	"3"	"0.000455829072645118"
"lignin biosynthesis"	"AraCyc"	"30"	"0.00123533849163271"	"3"	"0.349371862551474"
"phospholipid desaturation pathway"	"AraCyc"	"30"	"8.52585184027584e-24"	"3"	"9.83432603601255e-05"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"30"	"5.99739620659726e-28"	"3"	"0.000135375244686869"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"30"	"9.16177510645835e-33"	"3"	"1.74443392667359e-05"
"Androgen and estrogen metabolism"	"KEGG"	"30"	"8.31595166331831e-32"	"3"	"3.96420141203618e-05"
"Benzoate degradation via hydroxylation"	"KEGG"	"30"	"9.03883719461998e-23"	"3"	"0.000219758064091199"
"chlorophyll biosynthesis"	"TAIR-GO"	"29"	"3.88085319989042e-12"	"3"	"0.00302665477253089"
"chlorophyll biosynthesis"	"LitPath"	"29"	"2.91805758908889e-17"	"3"	"0.000336376894235359"
"starch metabolism"	"BioPath"	"28"	"1.91740998216845e-05"	"5"	"0.00753459689460524"
"formaldehyde assimilation I (serine pathway)"	"AraCyc"	"28"	"1.07578374681723e-06"	"5"	"0.0216191015114465"
"serine-isocitrate lyase pathway"	"AraCyc"	"28"	"0.00163910720154612"	"5"	"0.0811145252327077"
"Starch and sucrose metabolism"	"KEGG"	"28"	"0.00947516634270824"	"4"	"0.106583479961297"
"photorespiration"	"AraCyc"	"26"	"1.82277123475232e-07"	"7"	"0.00155962309456854"
"Pyruvate metabolism"	"KEGG"	"26"	"0.0181939403983106"	"4"	"0.0933919941499993"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"24"	"1.26693253348137e-08"	"3"	"0.00580755042490809"
"photosystem I"	"TAIR-GO"	"24"	"2.42333788805968e-20"	"3"	"0.000136079826728277"
"colanic acid building blocks biosynthesis"	"AraCyc"	"23"	"0.0407969800447866"	"6"	"0.0822254605365474"
"galactose degradation I"	"AraCyc"	"23"	"2.27683976898336e-24"	"6"	"6.16664592754464e-09"
"glucose conversion"	"AraCyc"	"23"	"0.000252276838144588"	"6"	"0.0164976889754119"
"lactose degradation IV"	"AraCyc"	"23"	"2.27683976898336e-24"	"6"	"6.16664592754464e-09"
"UDP-glucose conversion"	"AraCyc"	"23"	"0.000169482662628373"	"6"	"0.0144208549254308"
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"22"	"9.77552031644645e-13"	"4"	"0.000179430437805994"
"energy"	"FunCat"	"22"	"0"	"4"	"0"
"ascorbic acid biosynthesis"	"BioPath"	"20"	"0.000185289614703400"	"2"	"0.127516483164533"
"mRNA processing in chloroplast"	"BioPath"	"20"	"1.06399363735413e-10"	"4"	"0.000408661998288117"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"20"	"3.06026571152074e-09"	"2"	"0.00618952975000362"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"1.49017075445003e-10"	"3"	"0.00160781756620065"
"sucrose biosynthesis"	"AraCyc"	"20"	"2.08855119823252e-05"	"3"	"0.0423955398198034"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"20"	"9.70296689128733e-13"	"2"	"0.00881564774176117"
"Ascorbate and aldarate metabolism"	"KEGG"	"20"	"1.02657154346692e-05"	"2"	"0.0499130798757769"
"Fructose and mannose metabolism"	"KEGG"	"20"	"0.00441848241070923"	"3"	"0.0673722961911295"
"regulation of transcription"	"TAIR-GO"	"18"	"0"	"2"	"0"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"18"	"0.000140406168054916"	"3"	"0.0661486478947005"
"photoinhibition"	"TAIR-GO"	"17"	"1.07223198157157e-17"	"2"	"9.6511043667328e-05"
"photosystem II"	"TAIR-GO"	"17"	"1.35257266971283e-14"	"2"	"0.000901267824788684"
"carotenoid biosynthesis"	"TAIR-GO"	"16"	"2.85309688020837e-08"	"2"	"0.00455699306902904"
"fatty acid biosynthesis"	"TAIR-GO"	"16"	"0.000156579601919961"	"2"	"0.0292459680119827"
"response to high light intensity"	"TAIR-GO"	"16"	"1.45418210279966e-16"	"2"	"9.6511043667328e-05"
"response to light"	"TAIR-GO"	"16"	"0.0115704332777109"	"2"	"0.244072733077243"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"16"	"1.91098967571250e-07"	"2"	"0.0532081983493260"
"glycine biosynthesis I"	"AraCyc"	"16"	"0.0244566780125587"	"5"	"0.0678517622574401"
"phenylalanine degradation I"	"AraCyc"	"16"	"0.0147414179536769"	"3"	"0.106403959756305"
"starch biosynthesis"	"AraCyc"	"16"	"0"	"2"	"0"
"sucrose degradation III"	"AraCyc"	"16"	"4.19865210691086e-05"	"2"	"0.0897759107843245"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"16"	"2.11942601639426e-05"	"5"	"0.00273008608278111"
"TCA cycle variation II"	"AraCyc"	"16"	"5.79764753713703e-05"	"3"	"0.0244274227015957"
"trehalose biosynthesis III"	"AraCyc"	"16"	"0.0203688749413191"	"2"	"0.371379996372058"
"transport facilitation"	"FunCat"	"16"	"0"	"4"	"0"
"Citrate cycle (TCA cycle)"	"KEGG"	"16"	"0.016507789797948"	"2"	"0.158173963290674"
"Cyanoamino acid metabolism"	"KEGG"	"16"	"7.05854821774732e-06"	"2"	"0.0499130798757769"
"Nitrogen metabolism"	"KEGG"	"16"	"0.043085019339546"	"3"	"0.0212194850534983"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"15"	"4.82380363011919e-07"	"4"	"0.00113577518735038"
"starch degradation"	"AraCyc"	"15"	"0.000200182941456190"	"3"	"0.0155929386291594"
"Delta-pH pathway"	"BioPath"	"14"	"2.70465030363756e-12"	"2"	"0.000211701893420224"
"Ferredoxin"	"BioPath"	"14"	"1.26995867735977e-07"	"3"	"0.00123700185019255"
"plastid organization and biogenesis"	"TAIR-GO"	"14"	"1.34893916304436e-13"	"2"	"0.000373044727971263"
"cysteine biosynthesis II"	"AraCyc"	"14"	"0.000374476476738906"	"5"	"0.00348712935348104"
"mannitol degradation"	"AraCyc"	"14"	"0.00287625004249045"	"4"	"0.0239724826434893"
"serine biosynthesis"	"AraCyc"	"14"	"5.76039840343944e-09"	"5"	"6.12452657234141e-07"
"sorbitol degradation"	"AraCyc"	"14"	"0.00426396832237499"	"4"	"0.0280860518540911"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"14"	"0.00405060797026979"	"3"	"0.0133948523637448"
"Protein export"	"KEGG"	"14"	"0.000750060109182672"	"2"	"0.0720288184491498"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"13"	"0.00626477751688965"	"2"	"0.101216678155671"
"phosphate transport"	"TAIR-GO"	"13"	"3.2618586229241e-12"	"2"	"0.000373044727971263"
"transport routes "	"FunCat"	"13"	"6.46675077068139e-05"	"2"	"0.0373147911334282"
"aspartate degradation II"	"AraCyc"	"12"	"0.0200172291948529"	"2"	"0.0897759107843245"
"glycine degradation I"	"AraCyc"	"12"	"4.44441068098308e-07"	"3"	"0.00199102590363327"
"C-compound, carbohydrate catabolism"	"FunCat"	"12"	"0.0275253271445986"	"2"	"0.24683003319367"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"12"	"0"	"3"	"0"
"mRNA synthesis "	"FunCat"	"11"	"0.0120091121424147"	"2"	"0.102016446455412"
"pentose-phosphate pathway "	"FunCat"	"11"	"0.0105741577867029"	"2"	"0.0555336128186403"
"RNA synthesis "	"FunCat"	"11"	"0.0120091121424147"	"2"	"0.102016446455412"
"transcription"	"FunCat"	"11"	"9.10594570987e-06"	"2"	"0.0188082373353899"
"transcriptional control"	"FunCat"	"11"	"0.000150697226873433"	"2"	"0.0120883621255717"
"aspartate/ornithin cycle / nitric oxid from glutamate"	"BioPath"	"10"	"0.00535948450554147"	"1"	"0.203237146664928"
"Plastocyanin"	"BioPath"	"10"	"1.58919201857762e-08"	"1"	"0.00357331221378085"
"Regulatory enzymes"	"BioPath"	"10"	"2.70848991153161e-06"	"1"	"0.0102965328545021"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"10"	"0.00139852486499742"	"1"	"0.0456753274772842"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"1.58919201857762e-08"	"1"	"0.00357331221378085"
"aromatic amino acid family biosynthesis"	"TAIR-GO"	"10"	"0.0225929985897458"	"1"	"0.134842192682022"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"10"	"0.00541204681118373"	"1"	"0.103746330559035"
"carotene biosynthesis"	"TAIR-GO"	"10"	"4.77282755842308e-08"	"1"	"0.00618646633845063"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"1.25333332127002e-06"	"1"	"0.01199988794893"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"1.10676605473948e-07"	"1"	"0.00618646633845063"
"cytochrome b6f complex"	"TAIR-GO"	"10"	"4.98218757766949e-06"	"1"	"0.0282274158577124"
"cytochrome b6f complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose metabolism"	"TAIR-GO"	"10"	"4.98218757766949e-06"	"1"	"0.0193989680316909"
"magnesium chelatase complex"	"TAIR-GO"	"10"	"1.69408304568086e-11"	"1"	"0.00212649614192843"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"4.98218757766949e-06"	"1"	"0.0193989680316909"
"phenylpropanoid biosynthesis"	"TAIR-GO"	"10"	"3.00833466549289e-05"	"1"	"0.0193989680316909"
"photorespiration"	"TAIR-GO"	"10"	"4.81738713609241e-07"	"2"	"0.000901267824788684"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"10"	"1.6379119858989e-07"	"1"	"0.01199988794893"
"positive regulation of transcription"	"TAIR-GO"	"10"	"7.3416138211278e-08"	"1"	"0.00618646633845063"
"protein binding"	"TAIR-GO"	"10"	"3.41301305643763e-07"	"1"	"0.0193989680316909"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to oxidative stress"	"TAIR-GO"	"10"	"3.03516722474842e-08"	"1"	"0.0193989680316909"
"response to temperature"	"TAIR-GO"	"10"	"7.3416138211278e-08"	"1"	"0.00618646633845063"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"ascorbate biosynthesis"	"AraCyc"	"10"	"0.000164585384085604"	"1"	"0.120465186803439"
"peptidoglycan biosynthesis"	"AraCyc"	"10"	"1.60203422615956e-05"	"1"	"0.0979419738546414"
"phenylpropanoid biosynthesis"	"AraCyc"	"10"	"4.21459423698514e-06"	"1"	"0.0573812712394975"
"xanthophyll cycle"	"AraCyc"	"10"	"3.69585108230483e-09"	"1"	"0.00459032264378494"
"C-compound, carbohydrate anabolism"	"FunCat"	"10"	"0.00269189687232887"	"1"	"0.188856933169890"
"detoxification"	"FunCat"	"10"	"0"	"1"	"0"
"detoxification by modification"	"FunCat"	"10"	"6.90859216594126e-11"	"1"	"0.00511820486495046"
"electron transport and membrane-associated energy conservation "	"FunCat"	"10"	"8.40841926026852e-06"	"1"	"0.0520224056132716"
"Fluorene degradation"	"KEGG"	"10"	"0.00459401667673969"	"1"	"0.0886786765984222"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"0.0133061581869336"	"1"	"0.110021546576064"
"Reductive carboxylate cycle (CO2 fixation)"	"KEGG"	"10"	"0.0118054900858219"	"2"	"0.0279254692019096"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"10"	"0.00426331362160889"	"1"	"0.108045122199074"
"chlorophyll a biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"chorismate biosynthesis"	"LitPath"	"10"	"0.0105653712675055"	"1"	"0.123547932950176"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"0.000466131682204173"	"1"	"0.0345327463454889"
"Toc apparatus"	"BioPath"	"9"	"0.0121492602180398"	"1"	"0.137757805238414"
"abscisic acid biosynthesis"	"TAIR-GO"	"9"	"0.00280830889440579"	"1"	"0.0750741987739509"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"protein-chloroplast targeting"	"TAIR-GO"	"9"	"1.28535555154989e-05"	"1"	"0.0193989680316909"
"starch biosynthesis"	"TAIR-GO"	"9"	"0.00160744119806741"	"1"	"0.0383397554830623"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"chloroplast transport "	"FunCat"	"9"	"0.000296909440264242"	"1"	"0.0632746313994712"
"protein targeting, sorting and translocation"	"FunCat"	"9"	"6.38263775042802e-05"	"1"	"0.0520224056132716"
"Membrane Transport"	"KEGG"	"9"	"0.00464907833423268"	"1"	"0.168000929889605"
"Other ion-coupled transporters"	"KEGG"	"9"	"0.000171767660698157"	"1"	"0.0594862484145215"
"light harvesting complex"	"BioPath"	"8"	"0.00514980209996514"	"1"	"0.0456753274772842"
"Translation (chloroplast)"	"BioPath"	"8"	"0.00279096404418042"	"2"	"0.00618952975000362"
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"8"	"0"	"1"	"0"
"N-Glycan biosynthesis"	"KEGG"	"8"	"0.00818218420751495"	"1"	"0.121150819137246"
"One carbon pool by folate"	"KEGG"	"8"	"0.00116733560857950"	"2"	"0.0103259119145321"
"polyprenyl diphosphate biosynthesis"	"LitPath"	"8"	"0.000123603786652536"	"2"	"0.00376059985225092"
"proton gradient regulation"	"BioPath"	"7"	"0"	"1"	"0"
"fatty acid desaturation"	"TAIR-GO"	"7"	"1.99879352756858e-05"	"1"	"0.00618646633845063"
"one-carbon compound metabolism"	"TAIR-GO"	"7"	"3.75090805160485e-05"	"1"	"0.01199988794893"
"photomorphogenesis"	"TAIR-GO"	"7"	"1.10773654121663e-06"	"1"	"0.00618646633845063"
"photosynthetic electron transport"	"TAIR-GO"	"7"	"0.00120069566432358"	"1"	"0.0282274158577124"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"7"	"1.99879352756858e-05"	"1"	"0.00618646633845063"
"photosystem II assembly"	"TAIR-GO"	"7"	"4.50071106648949e-06"	"1"	"0.00618646633845063"
"photosystem II stabilization"	"TAIR-GO"	"7"	"6.43774053369058e-07"	"1"	"0.00212649614192843"
"MUTANT DATA SET"	"quantDE"	"2.392755"	"maxDE"	"9.231283036"	"MUTANT DATA SET"
"Photosystems "	"BioPath"	"291"	"7.24941293262572e-47"	"39"	"1.85032619401660e-08"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"254"	"4.35505707837423e-34"	"32"	"8.1409048866091e-08"
"C-compound and carbohydrate metabolism"	"FunCat"	"232"	"1.53411494653474e-10"	"38"	"0.0225424264515359"
"biogenesis of chloroplast"	"FunCat"	"195"	"3.87705084506262e-76"	"30"	"3.85108372098394e-15"
"additional photosystem II components"	"BioPath"	"156"	"1.27275013359629e-44"	"20"	"3.79845896278737e-08"
"photosynthesis"	"FunCat"	"144"	"7.2585700704216e-62"	"21"	"7.01248020774194e-11"
"Chlorophyll a/b binding proteins"	"BioPath"	"118"	"1.6094677435659e-55"	"15"	"7.4521759637358e-11"
"Carbon fixation"	"KEGG"	"118"	"3.39000292003152e-21"	"19"	"1.16979773276775e-05"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"113"	"1.40746825994900e-18"	"13"	"0.000226463230189967"
"transport "	"FunCat"	"112"	"0"	"19"	"0"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"107"	"3.52707650926015e-22"	"12"	"0.000165774051915073"
"glycolysis and gluconeogenesis"	"FunCat"	"103"	"0.000352103234875203"	"17"	"0.0771755409585396"
"Biosynthesis of steroids"	"KEGG"	"91"	"7.55928196890797e-10"	"10"	"0.0096848460076727"
"chlorophyll biosynthesis"	"AraCyc"	"90"	"2.99845306673056e-18"	"11"	"0.0163243869208161"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"83"	"1.22402319333301e-22"	"10"	"6.60402716270836e-05"
"Glycolysis / Gluconeogenesis"	"KEGG"	"79"	"0.00078733350773922"	"13"	"0.0399239078755295"
"chlorophyll biosynthesis"	"TAIR-GO"	"75"	"2.31175987601918e-28"	"8"	"2.38909118819742e-05"
"Photosynthesis"	"KEGG"	"71"	"2.91174570643319e-17"	"11"	"0.000114337374093113"
"Pyruvate metabolism"	"KEGG"	"71"	"0.0183510001647534"	"11"	"0.0938147009805914"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"68"	"0.00107196118405604"	"10"	"0.54030470853353"
"transport facilitation"	"FunCat"	"64"	"0"	"10"	"0"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"64"	"2.15874486944406e-15"	"8"	"0.000911040578327436"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"62"	"5.03226025738876e-22"	"8"	"2.28276810815330e-05"
"Calvin cycle"	"AraCyc"	"62"	"7.09279773051155e-14"	"12"	"0.000257057894727191"
"photorespiration"	"AraCyc"	"62"	"2.21979916332707e-22"	"12"	"6.90718437492162e-05"
"sterol biosynthesis"	"BioPath"	"60"	"0.000189445918649325"	"6"	"0.103765284001554"
"chlorophyll biosynthesis"	"LitPath"	"59"	"3.95789798908421e-28"	"6"	"2.26389498770942e-05"
"gluconeogenesis"	"AraCyc"	"58"	"2.88185227418839e-07"	"10"	"0.0137839177040332"
"Selenoamino acid metabolism"	"KEGG"	"56"	"1.23245587440907e-07"	"6"	"0.0409038220193539"
"Ascorbate and aldarate metabolism"	"KEGG"	"55"	"7.90669209577647e-11"	"7"	"0.00409584754407247"
"Carotenoid biosynthesis"	"BioPath"	"54"	"2.66684208087087e-17"	"6"	"0.000440123419076167"
"carotenoid biosynthesis"	"AraCyc"	"54"	"3.53530860934764e-25"	"6"	"2.77211211473588e-05"
"carotenid biosynthesis"	"LitPath"	"54"	"2.01762434808936e-21"	"6"	"0.000163250176369348"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"52"	"0.00243932969999436"	"6"	"0.185482581851706"
"acetate fermentation"	"AraCyc"	"52"	"0.0067932047398064"	"11"	"0.101478787549460"
"Cysteine metabolism"	"KEGG"	"52"	"6.02370299678127e-09"	"6"	"0.0238058335157497"
"brassinosteroid biosynthesis"	"LitPath"	"52"	"6.16347964276801e-07"	"6"	"0.0174716881727375"
"sterol and brassinosteroid biosynthesis"	"LitPath"	"52"	"5.03886842888814e-12"	"6"	"0.00197281320634751"
"Sulfur metabolism"	"KEGG"	"51"	"2.130111374263e-08"	"6"	"0.00742576645907511"
"chlorophyll binding"	"TAIR-GO"	"50"	"4.46366290477587e-16"	"6"	"0.00092793457173539"
"photosystem I"	"TAIR-GO"	"49"	"0"	"6"	"1.18402369338694e-06"
"Glycine, serine and threonine metabolism"	"KEGG"	"47"	"7.22207048081287e-05"	"8"	"0.0139081363115042"
"fatty acid biosynthesis"	"TAIR-GO"	"46"	"5.24005670317187e-10"	"6"	"0.00268577550770617"
"sulfate assimilation III"	"AraCyc"	"46"	"0.00237073329699237"	"5"	"0.190322561580386"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"46"	"1.15504779127626e-06"	"7"	"0.0193296862242027"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"44"	"0.0071697610696894"	"7"	"0.0692677463899222"
"Alanine and aspartate metabolism"	"KEGG"	"44"	"3.52489746028656e-05"	"5"	"0.119536079907214"
"ATP synthesis"	"KEGG"	"44"	"0.000306600758367623"	"8"	"0.027179770837835"
"biosynthesis of proto- and siroheme"	"AraCyc"	"42"	"0.00194388785509781"	"7"	"0.10517435630779"
"photosystem II"	"TAIR-GO"	"41"	"0"	"5"	"0"
"ascorbic acid biosynthesis"	"BioPath"	"40"	"0.000314805227359432"	"6"	"0.0369125475078485"
"sterol biosynthesis"	"TAIR-GO"	"40"	"0.000477732398999154"	"4"	"0.147997740270582"
"sterol biosynthesis"	"AraCyc"	"40"	"1.06461269499658e-05"	"4"	"0.079191915558002"
"Methionine metabolism"	"KEGG"	"40"	"1.69751034388076e-07"	"4"	"0.0614394429500273"
"Pentose phosphate pathway"	"KEGG"	"40"	"0.00626786117618395"	"7"	"0.0757270323248514"
"light harvesting complex"	"BioPath"	"38"	"1.93415412694529e-20"	"5"	"1.53085506583312e-05"
"Protein folding / chaperonins (chloroplast)"	"BioPath"	"38"	"4.49920280128362e-09"	"6"	"0.00296216473063279"
"cysteine biosynthesis I"	"AraCyc"	"38"	"0.00252365515336967"	"8"	"0.0352922726064387"
"Protein export"	"KEGG"	"38"	"4.78955366600969e-06"	"5"	"0.0927354070035793"
"regulation of transcription"	"TAIR-GO"	"37"	"0"	"4"	"0"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"37"	"0.00327667915108556"	"5"	"0.0457606507992029"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"37"	"1.61502058538522e-14"	"5"	"0.000359835973346013"
"response to light"	"TAIR-GO"	"36"	"0.0438176214810587"	"6"	"0.275094666757217"
"formylTHF biosynthesis"	"AraCyc"	"36"	"1.67607483346462e-11"	"6"	"0.00312624432479036"
"glycine biosynthesis I"	"AraCyc"	"36"	"7.51504399073503e-05"	"8"	"0.0614754540361668"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"36"	"4.31291489247905e-13"	"8"	"0.000519199610801305"
"aerobic respiration"	"FunCat"	"36"	"5.36846260901904e-09"	"6"	"0.000493826601804981"
"energy"	"FunCat"	"36"	"0"	"6"	"0"
"respiration"	"FunCat"	"36"	"5.36846260901904e-09"	"6"	"0.000493826601804981"
"Protein folding and associated processing"	"KEGG"	"35"	"9.67364010655593e-06"	"6"	"0.0194218609662865"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"35"	"4.00933630477589e-06"	"4"	"0.0216996764221783"
"photorespiration"	"TAIR-GO"	"34"	"0"	"5"	"0"
"fatty acid biosynthesis -- initial steps"	"AraCyc"	"34"	"0.00235906498430616"	"5"	"0.171723970106014"
"formaldehyde assimilation I (serine pathway)"	"AraCyc"	"34"	"0.00149771323845854"	"6"	"0.0880303084713422"
"lactose degradation IV"	"AraCyc"	"33"	"0"	"8"	"0"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"33"	"2.01327470478905e-05"	"4"	"0.0322753735308449"
"ascorbate glutathione cycle"	"AraCyc"	"32"	"1.17717836852693e-07"	"5"	"0.00763171185919095"
"aspartate degradation I"	"AraCyc"	"31"	"0.0162940132766946"	"5"	"0.0791186919844282"
"transported compounds (substrates)"	"FunCat"	"31"	"0"	"5"	"0"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"30"	"3.48577904650173e-20"	"3"	"0.000418181383576241"
"photosynthesis"	"TAIR-GO"	"30"	"0.0151661370684434"	"4"	"0.147997740270582"
"protein biosynthesis"	"TAIR-GO"	"30"	"0"	"5"	"0"
"response to UV"	"TAIR-GO"	"30"	"0.000172137510222086"	"3"	"0.103566103097436"
"Cyanoamino acid metabolism"	"KEGG"	"30"	"0.000125922867123714"	"5"	"0.050178068964788"
"Fluorene degradation"	"KEGG"	"29"	"3.94849647379004e-05"	"3"	"0.0747499399963325"
"mRNA processing in chloroplast"	"BioPath"	"28"	"1.07518686390522e-07"	"6"	"0.000913301835283613"
"ATP-dependent proteolysis"	"TAIR-GO"	"28"	"4.23232641079887e-12"	"7"	"1.84376228545028e-05"
"calmodulin binding"	"TAIR-GO"	"28"	"6.42348456269825e-07"	"3"	"0.103566103097436"
"carotene biosynthesis"	"TAIR-GO"	"28"	"0"	"3"	"0"
"glycine degradation I"	"AraCyc"	"28"	"1.63603888568735e-19"	"6"	"9.26285683766678e-06"
"C-compound and carbohydrate utilization "	"FunCat"	"28"	"0"	"5"	"0"
"aspartate degradation II"	"AraCyc"	"27"	"8.14098173820683e-05"	"4"	"0.0331047005469979"
"degradation "	"FunCat"	"27"	"0.000487809421338436"	"5"	"0.0550311509587768"
"protein degradation "	"FunCat"	"27"	"4.10594808420336e-07"	"5"	"0.0123900367926966"
"photosystem II type I  chlorophyll a /b binding protein"	"BioPath"	"26"	"5.26955846796493e-13"	"3"	"0.000621533541202571"
"TCA cycle variation II"	"AraCyc"	"26"	"8.66836967406612e-06"	"5"	"0.0106356926725129"
"Fatty acid biosynthesis (path 1)"	"KEGG"	"26"	"0.000617288941154139"	"3"	"0.150133131985326"
"Chloroplastic protein turnover"	"BioPath"	"24"	"4.53871869090405e-05"	"6"	"0.000913301835283613"
"ClpP protease complex "	"BioPath"	"24"	"6.30181907387474e-11"	"6"	"6.42976827922503e-05"
"Delta-pH pathway"	"BioPath"	"24"	"0"	"3"	"0"
"Early light-inducible proteins"	"BioPath"	"24"	"8.07008136938139e-07"	"3"	"0.0145753787299217"
"photosystem II type II  chlorophyll a /b binding protein"	"BioPath"	"24"	"7.8770595748996e-13"	"3"	"0.000621533541202571"
"unidimensional cell growth"	"TAIR-GO"	"24"	"0.0152312367307561"	"3"	"0.103566103097436"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"24"	"1.66890861631504e-11"	"3"	"0.00241737359089468"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"24"	"0.0115095396671434"	"3"	"0.168945052505195"
"response to pathogenic bacteria"	"TAIR-GO"	"23"	"1.12851962890771e-10"	"3"	"0.00185353188034329"
"carbon monoxide dehydrogenase pathway"	"AraCyc"	"23"	"4.73595318760483e-05"	"7"	"0.0133588472730115"
"galactose degradation I"	"AraCyc"	"23"	"1.42447422854627e-17"	"6"	"3.19380983562564e-07"
"cellulose biosynthesis"	"TAIR-GO"	"22"	"1.48255678104772e-05"	"4"	"0.0130083894130850"
"protein folding"	"TAIR-GO"	"22"	"0"	"3"	"0"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"22"	"0.0148421994681603"	"4"	"0.128415778524242"
"starch biosynthesis"	"AraCyc"	"22"	"0"	"3"	"0"
"electron transport and membrane-associated energy conservation "	"FunCat"	"22"	"8.76093689216163e-10"	"4"	"0.00126999624203189"
"ATP synthase components"	"BioPath"	"20"	"0.0184765325855029"	"3"	"0.0590547816245611"
"Cytochrome b6/f complex"	"BioPath"	"20"	"0.000741891738638756"	"2"	"0.158900858388194"
"Plastocyanin"	"BioPath"	"20"	"0"	"2"	"0"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"20"	"0.00097623482487991"	"2"	"0.0543591034580477"
"Transcriptional regulators (chloroplast)"	"BioPath"	"20"	"0"	"2"	"0"
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	"20"	"2.52937435813244e-12"	"5"	"5.16637584763002e-05"
"methionine biosynthesis"	"TAIR-GO"	"20"	"3.4372370863068e-09"	"2"	"0.0104965026135642"
"positive regulation of transcription"	"TAIR-GO"	"20"	"7.84957696397897e-12"	"2"	"0.00293776169107324"
"homocysteine and cysteine interconversion"	"AraCyc"	"20"	"1.48418688535815e-05"	"2"	"0.105714672413725"
"methionine biosynthesis II"	"AraCyc"	"20"	"0.00172327122128270"	"2"	"0.193809334458842"
"methionine degradation I"	"AraCyc"	"20"	"3.51321981578271e-05"	"2"	"0.105714672413725"
"phospholipid desaturation pathway"	"AraCyc"	"20"	"6.50445794450843e-07"	"2"	"0.0138278899798548"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"20"	"1.82138282404857e-07"	"2"	"0.040332227145182"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"20"	"0.0214476378587911"	"2"	"0.217265117256569"
"lipid transport "	"FunCat"	"20"	"5.79495090822646e-13"	"3"	"0.0066746864195772"
"nucleotide metabolism"	"FunCat"	"20"	"0"	"5"	"0"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"20"	"9.98971454972517e-06"	"2"	"0.0677216472822392"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"20"	"8.06748846082675e-08"	"2"	"0.0207312615366119"
"Androgen and estrogen metabolism"	"KEGG"	"20"	"2.09979029612802e-07"	"2"	"0.0333457958235378"
"Benzoate degradation via hydroxylation"	"KEGG"	"20"	"0.00132524142010276"	"2"	"0.0890709823390879"
"phytochromobilin biosynthesis"	"LitPath"	"20"	"0.000598258913993484"	"2"	"0.0592638054096379"
"hypersensitive response"	"TAIR-GO"	"19"	"3.78066130982057e-05"	"2"	"0.0419894927546085"
"stress response"	"FunCat"	"19"	"0"	"3"	"0"
"Sec (secretory) pathway"	"BioPath"	"18"	"3.36093810483253e-13"	"3"	"0.000621533541202571"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"18"	"0.048466668956068"	"2"	"0.0841968970041423"
"indoleacetic acid biosynthesis"	"TAIR-GO"	"18"	"3.56836280744676e-06"	"2"	"0.0234609587133956"
"photosynthesis light harvesting"	"TAIR-GO"	"18"	"0.00065777891473236"	"2"	"0.094423938344542"
"primary cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"18"	"5.44190406128081e-12"	"3"	"0.000418181383576241"
"signal transduction"	"TAIR-GO"	"18"	"0"	"2"	"0"
"IAA biosynthesis"	"AraCyc"	"18"	"0.0405329538562087"	"2"	"0.162594512274484"
"IAA biosynthesis I"	"AraCyc"	"18"	"0.000853810400156274"	"2"	"0.0808758663244992"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"18"	"4.50639929224711e-05"	"5"	"0.00223407220641757"
"serine biosynthesis"	"AraCyc"	"18"	"2.38725791953941e-08"	"6"	"3.19380983562564e-07"
"xanthophyll cycle"	"AraCyc"	"18"	"0"	"2"	"0"
"accessory proteins of electron transport and membrane-associated energy conservation"	"FunCat"	"18"	"0"	"3"	"0"
"transport routes "	"FunCat"	"18"	"0.0114232191257646"	"4"	"0.0379810540519904"
"Tetracycline biosynthesis"	"KEGG"	"18"	"4.22376080537892e-08"	"2"	"0.00491585702214959"
"photoinhibition"	"TAIR-GO"	"17"	"2.14557634194328e-09"	"2"	"0.00293776169107324"
"photosystem II assembly"	"TAIR-GO"	"17"	"1.53640216657441e-12"	"2"	"0.00293776169107324"
"photosystem II stabilization"	"TAIR-GO"	"17"	"0"	"2"	"0"
"glycosylglyceride desaturation pathway"	"AraCyc"	"17"	"2.81354953506016e-07"	"2"	"0.00606471579290462"
"Other ion-coupled transporters"	"KEGG"	"17"	"0.000655152380563372"	"3"	"0.0353117753558346"
"magnesium chelatase complex"	"TAIR-GO"	"16"	"0"	"2"	"0"
"plastid organization and biogenesis"	"TAIR-GO"	"16"	"9.49485232160903e-09"	"3"	"0.000418181383576241"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"16"	"0"	"2"	"0"
"response to high light intensity"	"TAIR-GO"	"16"	"9.49485232160903e-09"	"2"	"0.00293776169107324"
"RNA processing"	"TAIR-GO"	"16"	"0"	"3"	"0"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"16"	"0.00101685287344832"	"2"	"0.193809334458842"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"16"	"0.000510900118470897"	"4"	"0.0131680023734346"
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	"16"	"0.0164712279278659"	"3"	"0.0564981240596837"
"Biosynthesis of Polyketides and Nonribosomal Peptides"	"KEGG"	"16"	"0.000276856298170925"	"2"	"0.0333457958235378"
"Novobiocin biosynthesis"	"KEGG"	"16"	"0.0389622477906479"	"2"	"0.166253370513821"
"fatty acid desaturation"	"TAIR-GO"	"15"	"4.12179879145001e-08"	"2"	"0.00293776169107324"
"photosystem I subunit precursor"	"BioPath"	"14"	"1.41927615876693e-05"	"2"	"0.0307458832627535"
"chloroplast organization and biogenesis"	"TAIR-GO"	"14"	"2.73147628978737e-06"	"2"	"0.0419894927546085"
"photosystem II antenna complex"	"TAIR-GO"	"14"	"3.8225836709058e-09"	"2"	"0.00293776169107324"
"response to water deprivation"	"TAIR-GO"	"14"	"0"	"2"	"0"
"threonine degradation"	"AraCyc"	"14"	"0.0396385789344531"	"5"	"0.0309288518315995"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"14"	"0"	"2"	"0"
"One carbon pool by folate"	"KEGG"	"14"	"0.0185497570602918"	"3"	"0.059841447242427"
"glutamate degradation I"	"AraCyc"	"13"	"0.00345575565811636"	"2"	"0.058966620532162"
"1- and 2-Methylnaphthalene degradation"	"KEGG"	"13"	"0.0195478544249893"	"2"	"0.138660089601370"
"Plastoquinone biosynthesis"	"BioPath"	"12"	"0"	"2"	"0"
"psbP family of thylakoid proteins"	"BioPath"	"12"	"0.000130004193020055"	"2"	"0.0543591034580477"
"glycine decarboxylation via glycine cleavage system"	"TAIR-GO"	"12"	"0"	"2"	"0"
"response to osmotic stress"	"TAIR-GO"	"12"	"3.37625739949764e-05"	"2"	"0.0104965026135642"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"12"	"2.77210033157333e-06"	"2"	"0.0138278899798548"
"thiamine biosynthesis"	"AraCyc"	"12"	"6.03295186449147e-05"	"2"	"0.0252384063688149"
"systemic acquired resistance"	"TAIR-GO"	"11"	"0.0333429815808765"	"2"	"0.0658200089435369"
"detoxification"	"FunCat"	"11"	"0"	"2"	"0"
"electron / hydrogen transport "	"FunCat"	"11"	"0.000818814713113914"	"2"	"0.0197035554971712"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"0.018313731187179"	"1"	"0.0671967165931917"
"Other cell wall metabolism related enzymes"	"BioPath"	"10"	"0.000364426454497246"	"1"	"0.0250311075304973"
"Oxygen-evolving enhancer protein"	"BioPath"	"10"	"0.0460461632853562"	"1"	"0.180277447513815"
"Regulatory enzymes"	"BioPath"	"10"	"0.018313731187179"	"1"	"0.0671967165931917"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"10"	"0.0458177836962606"	"1"	"0.153028350330163"
"biotin binding"	"TAIR-GO"	"10"	"4.40867950769343e-05"	"1"	"0.0205748238435522"
"cell death"	"TAIR-GO"	"10"	"0.0329124807841342"	"1"	"0.101201393683456"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"0.00329669986976153"	"1"	"0.0558489481485102"
"chloroplast ATP synthase complex"	"TAIR-GO"	"10"	"4.40867950769343e-05"	"1"	"0.0205748238435522"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"0.00329669986976153"	"1"	"0.0558489481485102"
"cysteine biosynthesis"	"TAIR-GO"	"10"	"0.00329669986976153"	"1"	"0.0558489481485102"
"D-xylose metabolism"	"TAIR-GO"	"10"	"0.00173563307825837"	"1"	"0.101201393683456"
"defense response to pathogenic bacteria, incompatible interaction"	"TAIR-GO"	"10"	"0.0329124807841342"	"1"	"0.153028350330163"
"glutathione metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glycine catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methylation-dependent chromatin silencing"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photosynthetic water oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"10"	"0.00441713801292367"	"1"	"0.101201393683456"
"phytochromobilin biosynthesis"	"TAIR-GO"	"10"	"0.00329669986976153"	"1"	"0.0558489481485102"
"plastoquinone biosynthesis"	"TAIR-GO"	"10"	"4.40867950769343e-05"	"1"	"0.0205748238435522"
"posttranscriptional gene silencing"	"TAIR-GO"	"10"	"0"	"1"	"0"
"protein binding"	"TAIR-GO"	"10"	"0.00755034155478483"	"1"	"0.153028350330163"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"proton transport"	"TAIR-GO"	"10"	"0.0458177836962606"	"1"	"0.153028350330163"
"response to chemical substance"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to oxidative stress"	"TAIR-GO"	"10"	"0.00121995960479770"	"1"	"0.153028350330163"
"response to pathogenic fungi"	"TAIR-GO"	"10"	"0.00121995960479770"	"1"	"0.0558489481485102"
"response to salicylic acid stimulus"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to toxin"	"TAIR-GO"	"10"	"0"	"1"	"0"
"RNA binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"vitamin E biosynthesis"	"TAIR-GO"	"10"	"0.0329124807841342"	"1"	"0.101201393683456"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xenobiotic catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"ascorbate biosynthesis"	"AraCyc"	"10"	"0.0288461802713496"	"1"	"0.290532229586099"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"10"	"0.0143991063242604"	"1"	"0.0716734061143966"
"methionine and S-adenosylmethionine synthesis"	"AraCyc"	"10"	"0.00965804750398576"	"1"	"0.152736422121729"
"peptidoglycan biosynthesis"	"AraCyc"	"10"	"0.00490641090565234"	"1"	"0.243941926639077"
"plastoquinone biosynthesis"	"AraCyc"	"10"	"0.000620021279782594"	"1"	"0.0716734061143966"
"proline biosynthesis I"	"AraCyc"	"10"	"0.00121908029187425"	"3"	"0.00927490483354857"
"ribose degradation"	"AraCyc"	"10"	"0.00965804750398576"	"3"	"0.0445829195717954"
"detoxification by modification"	"FunCat"	"10"	"1.75540889382358e-06"	"1"	"0.0326731939221594"
"ionic homeostasis "	"FunCat"	"10"	"0"	"1"	"0"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"regulation of nucleotide metabolism"	"FunCat"	"10"	"0"	"2"	"0"
"Biosynthesis of vancomycin group antibiotics"	"KEGG"	"10"	"9.36289483212193e-08"	"1"	"0.0121749871762346"
"Polyketide sugar unit biosynthesis"	"KEGG"	"10"	"9.36289483212193e-08"	"1"	"0.0121749871762346"
"chlorophyll a biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"chlorophyll catabolism"	"LitPath"	"10"	"0.00464367611826726"	"1"	"0.0518071331919598"
"phytol biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"abscisic acid mediated signaling"	"TAIR-GO"	"9"	"0.0319460667130147"	"1"	"0.101201393683456"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"DNA methylation"	"TAIR-GO"	"9"	"0"	"1"	"0"
"glutamate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"negative regulation of signal transduction"	"TAIR-GO"	"9"	"0"	"1"	"0"
"negative regulation of transcription"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nitrogen compound metabolism"	"TAIR-GO"	"9"	"0.00238795099935094"	"1"	"0.0558489481485102"
"nuclear heterochromatin"	"TAIR-GO"	"9"	"0"	"1"	"0"
"phosphate transport"	"TAIR-GO"	"9"	"0.00335720272982289"	"1"	"0.101201393683456"
"phosphoinositide-mediated signaling"	"TAIR-GO"	"9"	"0"	"1"	"0"
"response to abiotic stimulus"	"TAIR-GO"	"9"	"9.47243701454896e-06"	"1"	"0.0205748238435522"
"RNA interference, production of siRNA"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sulfur metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine degradation III"	"AraCyc"	"9"	"5.6578366281283e-05"	"1"	"0.0388690609536506"
"Taurine and hypotaurine metabolism"	"KEGG"	"9"	"0.0095630633999859"	"1"	"0.0971061755136851"
"biosynthesis of extracellular lipids"	"LitPath"	"9"	"0"	"1"	"0"
"nonphotochemical quenching"	"TAIR-GO"	"8"	"0.000569823138058442"	"1"	"0.0205748238435522"
"photosystem I antenna complex"	"TAIR-GO"	"8"	"0"	"1"	"0"
"response to reactive oxygen species"	"TAIR-GO"	"8"	"0"	"1"	"0"
"xanthophyll biosynthesis "	"TAIR-GO"	"8"	"0"	"1"	"0"
"accessory proteins of photosynthetic electron transport "	"FunCat"	"8"	"1.25458836330184e-06"	"1"	"0.0117352163637375"
"calcium-mediated signaling"	"TAIR-GO"	"7"	"0.00298613252822824"	"1"	"0.0558489481485102"
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	"7"	"0"	"1"	"0"
"one-carbon compound metabolism"	"TAIR-GO"	"7"	"0.0429340896443024"	"1"	"0.101201393683456"
"systemic acquired resistance, salicylic acid mediated signaling pathway"	"TAIR-GO"	"7"	"0.00191221724370833"	"1"	"0.0558489481485102"