"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Biosynthesis of steroids"	"KEGG"	"28"	"5"	""	""
"ORGAN DATA SET"	"quantDE"	"2.785821"	"maxDE"	"3.827878"	"ORGAN DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"32"	"1.68044373813764e-27"	"10"	"3.65718431613036e-09"
"Methane metabolism"	"KEGG"	"22"	"1.64769952126243e-20"	"9"	"7.41634980612696e-09"
"Phenylalanine metabolism"	"KEGG"	"22"	"2.11242936510587e-17"	"9"	"1.50904409178217e-08"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"22"	"4.58233703536613e-25"	"9"	"7.98193610395087e-10"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"7.9843964683365e-38"	"2"	"6.96688734218565e-07"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"19"	"1.95139016051129e-09"	"2"	"0.0270211544677692"
"monoterpene biosynthesis"	"LitPath"	"19"	"4.69353218541302e-21"	"2"	"8.5276848777144e-05"
"terpenoid metabolism"	"LitPath"	"19"	"2.15806401280586e-09"	"2"	"0.0294172030471018"
"detoxification"	"FunCat"	"16"	"0"	"5"	"0"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"15"	"0.0175455540173176"	"3"	"0.0512959720317434"
"Phenylpropanoid Metabolism"	"BioPath"	"14"	"1.30171779727183e-09"	"2"	"0.00463546860564666"
"isoprenoid biosynthesis "	"FunCat"	"14"	"5.4859130490172e-08"	"3"	"0.00166588302420163"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"14"	"9.29456587110356e-09"	"3"	"0.000980195304383612"
"Biosynthesis of steroids"	"KEGG"	"13"	"3.41189759210525e-07"	"2"	"0.0128481206727934"
"triterpene biosynthesis"	"LitPath"	"13"	"2.75127119241361e-10"	"2"	"0.00095692145830659"
"detoxification involving cytochrome P450 "	"FunCat"	"12"	"1.63667653596559e-20"	"3"	"2.11317542657259e-06"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"4.38851282501837e-15"	"1"	"0.000329169151042286"
"fatty acid metabolism"	"TAIR-GO"	"10"	"8.70094432403129e-10"	"1"	"0.00950776852414456"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"4.26181912175897e-08"	"1"	"0.0291422193812036"
"Fluorene degradation"	"KEGG"	"10"	"2.40713132288498e-10"	"1"	"0.0109168442927782"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"1.16953099365199e-09"	"1"	"0.0139485362861263"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"10"	"8.30963457176863e-05"	"1"	"0.232089875014582"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"10"	"0.0196679770017782"	"5"	"0.00595041548849848"
"fatty acid modulation"	"LitPath"	"10"	"8.28159356858488e-14"	"1"	"0.000456162758872365"
"monoterpene biosynthesis"	"AraCyc"	"9"	"1.30265951522927e-20"	"1"	"1.69158243969400e-05"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"6.09782622562053e-23"	"1"	"5.64615331338862e-06"
"secondary metabolism"	"FunCat"	"8"	"0.000130927744112957"	"2"	"0.0142963239809893"
"storage protein"	"FunCat"	"8"	"1.01462256866594e-14"	"2"	"5.73939888713954e-06"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"7"	"6.49442160490492e-10"	"1"	"0.000940242643224858"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"7"	"4.05495185581759e-12"	"1"	"0.000215810318173423"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"7"	"2.08854151626836e-13"	"1"	"7.2323862547572e-05"
"ion transport "	"FunCat"	"7"	"0"	"1"	"0"
"transport "	"FunCat"	"7"	"3.73557681745846e-13"	"1"	"0.000215810318173423"
"transport facilitation"	"FunCat"	"7"	"0"	"1"	"0.000215810318173423"
"transported compounds (substrates)"	"FunCat"	"7"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"1.928685"	"maxDE"	"3.927661"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"2.43008"	"maxDE"	"3.8222989"	"HORMONE DATA SET"
"Oxidative phosphorylation"	"KEGG"	"16"	"1.92339406760888e-14"	"3"	"0.00425891443765241"
"Methane metabolism"	"KEGG"	"14"	"8.99007029729165e-14"	"7"	"4.67479953375559e-07"
"Phenylalanine metabolism"	"KEGG"	"14"	"8.84804820106667e-12"	"7"	"8.1680261718072e-07"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"14"	"1.14780007730136e-16"	"7"	"8.13848499546394e-08"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"14"	"9.41050809192873e-11"	"7"	"2.21333832854264e-06"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"12.5"	"0.00440222187987493"	"4"	"0.0234021442314499"
"pectin metabolism"	"BioPath"	"12.5"	"8.68306770345208e-09"	"4"	"0.000693710083000348"
"Lipid signaling"	"AcylLipid"	"12"	"5.39094564847838e-08"	"3"	"0.00375550870313984"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"2.56224766583905e-12"	"1"	"0.00195319736574836"
"Phenylpropanoid Metabolism"	"BioPath"	"10"	"0.0012843262877169"	"1"	"0.228985512877326"
"flavonol biosynthesis"	"AraCyc"	"10"	"6.8598899404179e-19"	"1"	"0.00209246492868306"
"biogenesis of cell wall"	"FunCat"	"8"	"2.21237558991394e-07"	"2"	"0.00633246755205248"
"C-compound and carbohydrate metabolism"	"FunCat"	"8"	"0.0174577317893121"	"2"	"0.212364933481515"
"storage protein"	"FunCat"	"8"	"2.97045705699482e-18"	"2"	"1.90873752836352e-06"
"Biosynthesis of steroids"	"KEGG"	"8"	"4.90968524987781e-05"	"2"	"0.00839452410997491"
"Terpenoid biosynthesis"	"KEGG"	"8"	"2.94575042760016e-08"	"2"	"0.00099149712301645"
"MUTANT DATA SET"	"quantDE"	"2.220679"	"maxDE"	"4.159590871"	"MUTANT DATA SET"
"Ribosome"	"KEGG"	"30"	"4.07442467240247e-09"	"5"	"0.0043990644606141"
"Intermediary Carbon Metabolism"	"BioPath"	"26"	"3.0743021146677e-08"	"3"	"0.0320964698219775"
"C-compound and carbohydrate metabolism"	"FunCat"	"26"	"0.0108191158527577"	"3"	"0.225226894763411"
"glycolysis and gluconeogenesis"	"FunCat"	"26"	"4.01780170353879e-08"	"3"	"0.0216981776644822"
"Photosystems "	"BioPath"	"22"	"2.98917384084248e-07"	"3"	"0.00853163772801826"
"additional photosystem II components"	"BioPath"	"16"	"2.07032190585943e-09"	"2"	"0.00325730308027897"
"ATP synthase components"	"BioPath"	"16"	"1.62953180526839e-19"	"2"	"4.95934557010458e-05"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"16"	"2.69063135841799e-07"	"2"	"0.0154090450714952"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"16"	"2.14345627143197e-20"	"2"	"3.49485376087692e-05"
"proton transport"	"TAIR-GO"	"16"	"2.14345627143197e-20"	"2"	"3.49485376087692e-05"
"acetate fermentation"	"AraCyc"	"16"	"1.31898658675538e-09"	"2"	"0.00655620684460651"
"fructose degradation (anaerobic)"	"AraCyc"	"16"	"5.37545860135851e-10"	"2"	"0.00529338856041955"
"gluconeogenesis"	"AraCyc"	"16"	"4.48516755848318e-11"	"2"	"0.00202375622809951"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"16"	"1.71371614799649e-16"	"2"	"0.000274358378581538"
"glycerol degradation II"	"AraCyc"	"16"	"6.38068635022502e-12"	"2"	"0.00202375622809951"
"glycolysis I"	"AraCyc"	"16"	"1.18066253238448e-05"	"2"	"0.0356794921867751"
"glycolysis IV"	"AraCyc"	"16"	"6.03449940772905e-10"	"2"	"0.0055329191640503"
"sorbitol fermentation"	"AraCyc"	"16"	"1.46932726759633e-09"	"2"	"0.00603143388541943"
"Glycolysis / Gluconeogenesis"	"KEGG"	"16"	"4.33321337583803e-09"	"2"	"0.0125146501530721"
"isoprenoid biosynthesis "	"FunCat"	"11"	"0.0026716934988595"	"2"	"0.0181665385697091"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"11"	"0.000868266026135674"	"2"	"0.0124278828950694"
"starch metabolism"	"BioPath"	"10"	"1.79913450432347e-06"	"1"	"0.0227379091980599"
"Transporters required for plastid development"	"BioPath"	"10"	"0"	"1"	"0"
"glycolysis"	"TAIR-GO"	"10"	"7.7126420721014e-16"	"1"	"0.000241470257874657"
"iron ion homeostasis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"proton-transporting ATP synthase, catalytic core (sensu Eukaryota)"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to heat"	"TAIR-GO"	"10"	"5.99430938012706e-08"	"1"	"0.0144393883665612"
"response to oxidative stress"	"TAIR-GO"	"10"	"1.19134342149392e-13"	"1"	"0.00234404592423998"
"response to stress"	"TAIR-GO"	"10"	"1.29780712045149e-11"	"1"	"0.00142040696958750"
"response to sucrose stimulus"	"TAIR-GO"	"10"	"3.18016973661376e-11"	"1"	"0.00348149456030014"
"starch catabolism"	"TAIR-GO"	"10"	"1.30559137679341e-14"	"1"	"0.000717268869005546"
"Calvin cycle"	"AraCyc"	"10"	"9.14129347334428e-07"	"1"	"0.0196754681312370"
"starch degradation"	"AraCyc"	"10"	"3.69553498374828e-10"	"1"	"0.00318449497506716"
"C-compound and carbohydrate utilization "	"FunCat"	"10"	"7.89523126128326e-19"	"1"	"8.36566615222628e-05"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"10"	"2.63523466523799e-15"	"1"	"0.000249519291014379"
"energy"	"FunCat"	"10"	"6.58224911998926e-17"	"1"	"0.000249519291014379"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"10"	"2.59036306824446e-17"	"1"	"8.36566615222628e-05"
"ion transport "	"FunCat"	"10"	"0"	"1"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"photosynthesis"	"FunCat"	"10"	"0.000993175173758569"	"1"	"0.0621946385389628"
"transport "	"FunCat"	"10"	"6.58224911998926e-17"	"1"	"0.000249519291014379"
"transport facilitation"	"FunCat"	"10"	"0"	"1"	"0.000249519291014379"
"transported compounds (substrates)"	"FunCat"	"10"	"0"	"1"	"0"
"Carbon fixation"	"KEGG"	"10"	"4.50170960311919e-05"	"1"	"0.0643858706344598"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"10"	"1.85112869069116e-08"	"1"	"0.0135136548344783"
"Starch and sucrose metabolism"	"KEGG"	"10"	"0.000203068964213429"	"1"	"0.0826460933498877"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"9"	"4.94902514548844e-07"	"2"	"0.00342702203751928"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"7"	"7.72391789693006e-06"	"1"	"0.00637177722639536"
"Biosynthesis of steroids"	"KEGG"	"7"	"0.00353224693883495"	"1"	"0.0344898414673497"
"triterpene biosynthesis"	"LitPath"	"7"	"7.2033177470627e-11"	"1"	"0.00115458033922628"
"Translation factors"	"KEGG"	"6.5"	"0.00814924719418157"	"2"	"0.016856291324185"