"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN THREE DATA SETS" "sum.of.scores" "sum.of.genes" "ORGAN DATA SET" "quantDE" 3.563147 "maxDE" 6.15339 "ORGAN DATA SET" "Phenylpropanoid Metabolism" "BioPath" 20 0.0000000511865571439753 2 0.0300464521918077 "C-compound and carbohydrate metabolism" "FunCat" 20 0.000000226202977504936 6 0.000397983303273616 "Synthesis and storage of oil" "AcylLipid" 20 5.04658086131105E-026 6 0.00000000171463730363388 "glycolysis and gluconeogenesis" "FunCat" 18 0.0000000000306311132220257 3 0.00384045858327737 "glyoxylate cycle" "AraCyc" 16 0.0000000000000224084992306833 2 0.000742812512238552 "TCA cycle variation VII" "AraCyc" 16 0.0000000307024779911334 2 0.0177939026235387 "TCA cycle variation VIII" "AraCyc" 16 0.000000000131445594117355 2 0.00670935795510833 "Glyoxylate and dicarboxylate metabolism" "KEGG" 16 1.63144096556267E-015 2 0.000968139723141809 "Pyruvate metabolism" "KEGG" 14 0.000000210708292378104 2 0.0142683121049529 "lignin biosynthesis" "AraCyc" 12 0.000000673717100250156 2 0.00495556328851232 "Fatty acid biosynthesis (path 2)" "KEGG" 12 2.62300791697274E-016 2 0.0000386789323078911 "Fatty acid metabolism" "KEGG" 12 0.0000000191835019691129 2 0.00171806261228371 "Valine, leucine and isoleucine degradation" "KEGG" 12 0.000000000847658945022032 2 0.00187010899902401 "Degradation of storage lipids and straight fatty acids" "AcylLipid" 12 0.00000254578128202976 2 0.0440824471887862 "Phenylpropanoid pathway" "LitPath" 12 0.0000000513350327989037 2 0.0127706118662102 "core phenylpropanoid metabolism" "BioPath" 10 0.000000467476833888212 1 0.014051395032785 "fatty acid beta oxidation complex" "BioPath" 10 0.0000000000525128892336544 1 0.00345408884489615 "Gluconeogenesis from lipids in seeds" "BioPath" 10 0.00000852918478916515 1 0.0306908494794636 "Glucosyltransferases for benzoic acids" "BioPath" 10 0.000000000125785527361415 1 0.00119035222624997 "Intermediary Carbon Metabolism" "BioPath" 10 0.00530912067002807 1 0.134910601760383 "fatty acid beta-oxidation" "TAIR-GO" 10 3.3519163482915E-015 1 0.000423195781294186 "glyoxysome organization and biogenesis" "TAIR-GO" 10 0 1 0 "jasmonic acid biosynthesis" "TAIR-GO" 10 0.0000000000650437359779156 1 0.00463602968233662 "lignin biosynthesis" "TAIR-GO" 10 0.000000000000397051256223745 1 0.00100637567966791 "response to wounding" "TAIR-GO" 10 0.00000000104473774337543 1 0.00620540432521812 "fatty acid oxidation pathway" "AraCyc" 10 0.0000000636087395777322 1 0.00977371842176333 "isoleucine degradation I" "AraCyc" 10 0.0000000636087395777322 1 0.0153871278927901 "isoleucine degradation III" "AraCyc" 10 0.000000000034718892167137 1 0.00390653001220967 "leucine degradation I" "AraCyc" 10 0.0000000636087395777322 1 0.0153871278927901 "leucine degradation II" "AraCyc" 10 0.000000000034718892167137 1 0.00390653001220967 "glyoxylate cycle" "FunCat" 10 2.26931261670666E-021 1 0.000094253394310263 "Benzoate degradation via hydroxylation" "KEGG" 10 0.00000000000612564067459251 1 0.00216663257632381 "Bile acid biosynthesis" "KEGG" 10 0.0000000000836186501889529 1 0.00562555768944478 "STRESS DATA SET" "quantDE" 2.361534 "maxDE" 4.276082 "STRESS DATA SET" "Phenylpropanoid Metabolism" "BioPath" 11 0.0000183033009830283 2 0.0117798140559684 "Glucosyltransferases for benzoic acids" "BioPath" 10 0.0000000000000908389524621091 1 0.000611054055091855 "C-compound and carbohydrate utilization " "FunCat" 10 1.65998458931541E-033 1 0.000000618152671346769 "Carotenoid biosynthesis" "BioPath" 8 0.0000000000064714337931265 1 0.000432176302686664 "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" 8 0.000100937436149484 1 0.0239737773271585 "abscisic acid biosynthesis" "TAIR-GO" 8 0.000000000000320428309098436 1 0.000231779371209205 "response to osmotic stress" "TAIR-GO" 8 1.47110536512489E-017 1 0.0000310939227358021 "response to water deprivation" "TAIR-GO" 8 0 1 0 "sugar mediated signaling" "TAIR-GO" 8 0.0000000000000197674190563842 1 0.0000775762251993673 "xanthophyll biosynthesis " "TAIR-GO" 8 0 1 0 "Carotenoid biosynthesis" "AraCyc" 8 2.31765318073321E-017 1 0.00001691582439694 "xanthophyll cycle" "AraCyc" 8 1.33408743176369E-024 1 0.000000376410220892574 "carotenid biosynthesis" "LitPath" 8 0.00000000109579923028165 1 0.000710474218872533 "Carotenoid and abscisic acid metabolism" "LitPath" 8 0.0000000886556505738468 1 0.00268576773539919 "HORMONE DATA SET" "quantDE" 1.756729 "maxDE" 4.4747438 "HORMONE DATA SET" "Gluconeogenesis from lipids in seeds" "BioPath" 16 6.13056843159267E-018 3 0.0000452633814569428 "fatty acid oxidation pathway" "AraCyc" 10 0.00000000110420570370181 1 0.00651384565417154 "octane oxidation" "AraCyc" 10 0.0000000000277729317015122 1 0.00177703012907117 "Fatty acid metabolism" "KEGG" 10 0.000000000176606420782843 1 0.00543790670537101 "Miscellaneous acyl lipid metabolism" "AcylLipid" 10 0 1 0 "polyamine biosynthesis" "TAIR-GO" 9 8.04928124810733E-025 1 0.0000046720290390382 "polyamine biosynthesis I" "AraCyc" 9 0.000000109143715908357 1 0.0129504361777726 "polyamine biosynthesis II" "AraCyc" 9 0.00000000248046751735313 1 0.00522218247557232 "polyamine biosynthesis III" "AraCyc" 9 0.0000000000217513852070267 1 0.00216324059087386 "spermine biosynthesis I" "AraCyc" 9 0.00000000020035293886901 1 0.00216324059087386 "spermine biosynthesis II" "AraCyc" 9 0.0000000000000167070956146546 1 0.00024270913711929 "Arginine and proline metabolism" "KEGG" 9 0.00000000117878144713829 1 0.00822107892800751 "beta-Alanine metabolism" "KEGG" 9 0.00000000000245977823451568 1 0.00189094747393408 "Urea cycle and metabolism of amino groups" "KEGG" 9 0.00000000000442675717840135 1 0.00272621891380809 "C-compound and carbohydrate metabolism" "FunCat" 8 0.00116922899058321 2 0.0456750112342408 "Phenylpropanoid pathway" "LitPath" 8 0.0000064280488724096 3 0.000171155625763927 "MUTANT DATA SET" "quantDE" 2.748744 "maxDE" 5.473599853 "MUTANT DATA SET"