"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN TWO DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"sterol biosynthesis"	"BioPath"	36	4		
"sterol biosynthesis"	"AraCyc"	36	4		
"Phenylpropanoid Metabolism"	"BioPath"	31	5		
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	22	3		
"lignin biosynthesis"	"AraCyc"	22	3		
"lignin biosynthesis"	"AraCyc"	22	3		
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	18	2		
"Terpenoid biosynthesis"	"KEGG"	18	2		
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	18	2		
"Flavonoid and anthocyanin metabolism"	"BioPath"	17	3		
"flavonoid biosynthesis"	"TAIR-GO"	16	2		
"mRNA synthesis "	"FunCat"	16	2		
"RNA synthesis "	"FunCat"	16	2		
"transcription"	"FunCat"	16	2		
"transcriptional control"	"FunCat"	16	2		
"ORGAN DATA SET"	"quantDE"	2.078618	"maxDE"	3.8818106	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	2.387871	"maxDE"	6.102081	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	0	"maxDE"	2.3833583	"HORMONE DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	42	0.000299266205597246	7	0.0960027544080473
"Lipid signaling"	"AcylLipid"	34	0.0000192342015418967	4	0.310540054094187
"response to abscisic acid stimulus"	"TAIR-GO"	33	3.57253452501475E-040	5	0.00000000523742560994716
"Fatty acid metabolism"	"KEGG"	33	6.9169386595479E-018	5	0.0000529821938024502
"Urea cycle and metabolism of amino groups"	"KEGG"	29	5.9998477602395E-023	3	0.00128513299406884
"Inositol phosphate metabolism"	"KEGG"	27	0.0000000409142351548816	4	0.0479453686618595
"Phenylpropanoid Metabolism"	"BioPath"	23	0.0398890987503029	4	0.095822160899805
"Glycerolipid metabolism"	"KEGG"	23	0.0000000000491561773332577	4	0.000488447011725218
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	22	0.0493661323221441	7	0.0251338514587998
"Gluconeogenesis from lipids in seeds"	"BioPath"	20	0.0000023721765741008	2	0.0718897042028899
"Prolin/Hydroxyproline from glutamate"	"BioPath"	20	1.89076268831131E-023	2	0.000304087297399881
"hyperosmotic salinity response"	"TAIR-GO"	20	4.02589207449032E-022	2	0.000324811693246588
"proline biosynthesis"	"TAIR-GO"	20	6.00206258395559E-028	2	0.0000114958334754351
"sucrose biosynthesis"	"AraCyc"	20	1.72888844204723E-015	3	0.000594673327288457
"glycolysis and gluconeogenesis"	"FunCat"	20	0.00877577647368315	3	0.156940199713074
"Phosphatidylinositol signaling system"	"KEGG"	20	0.000000000325843569147617	2	0.0316575684525094
"Signal Transduction"	"KEGG"	20	0.000000000677336898177546	2	0.0341252107930946
"response to water deprivation"	"TAIR-GO"	19	0	2	0
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	17	0.00000000309761077328393	2	0.00844104559299395
"Pyruvate metabolism"	"KEGG"	17	0.00423182553145063	4	0.0154422760798347
"sucrose metabolism"	"BioPath"	16	0.0000000000358788351964664	2	0.00224583623195502
"sucrose degradation III"	"AraCyc"	16	0.000000000000209711230165536	2	0.00372250846801932
"Starch and sucrose metabolism"	"KEGG"	16	0.0128683129737871	2	0.199133938703809
"Phenylpropanoid pathway"	"LitPath"	16	0.000000336962521734439	3	0.00453462144489804
"Arginine and proline metabolism"	"KEGG"	15	0.000029405042382	3	0.0102348216088688
"beta-Alanine metabolism"	"KEGG"	15	0.00000000638221907882896	3	0.000623759536317155
"core phenylpropanoid metabolism"	"BioPath"	14	0.000102038480150897	2	0.0254610196286332
"C-compound, carbohydrate anabolism"	"FunCat"	14	0.000000000141544254396573	2	0.00434524257879397
"Ascorbate and aldarate metabolism"	"KEGG"	14	0.00000436386834365082	3	0.0015062294903322
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	13	0.0256799825105141	2	0.0597908476508067
"Bile acid biosynthesis"	"KEGG"	13	0.0000000245918884907762	3	0.000249456200467382
"response to dessication"	"TAIR-GO"	12	9.23364352992664E-018	2	0.0000114958334754351
"lignin biosynthesis"	"AraCyc"	12	0.00103380348790619	2	0.0587678525582068
"biogenesis of cell wall"	"FunCat"	12	0.00392201711851547	2	0.106370193094457
"detoxification"	"FunCat"	12	0	2	0
"energy"	"FunCat"	12	4.98831575235376E-019	3	0
"isoprenoid biosynthesis "	"FunCat"	12	0.0213995524624343	2	0.0953409930609692
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	12	0.00774862252341	2	0.0685117238245271
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	12	0	3	0
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	12	0.0430862233342103	2	0.332761913731775
"colanic acid building blocks biosynthesis"	"AraCyc"	11	0.00198970866775954	4	0.00515641122907284
"dTDP-rhamnose biosynthesis"	"AraCyc"	11	0.000118261948470266	4	0.00159575575429632
"galactose degradation I"	"AraCyc"	11	0.0000000000000444499147069629	4	0.0000000617582812367244
"glucose conversion"	"AraCyc"	11	0.0000522501622002762	4	0.00114392226471576
"lactose degradation IV"	"AraCyc"	11	0.0000000000000444499147069629	4	0.0000000617582812367244
"UDP-glucose conversion"	"AraCyc"	11	0.0000406446892201065	4	0.00101692823769214
"Nicotinate and nicotinamide metabolism"	"KEGG"	11	0.0385251184807511	2	0.237002159726508
"degradation of abscisic acid"	"LitPath"	10	3.77636518133062E-033	2	0.00000268323998777326
"fatty acid beta oxidation complex"	"BioPath"	10	0.00000558998463322689	1	0.0385705263225679
"cell death"	"TAIR-GO"	10	0.0000000000272457686794696	1	0.00124188538865604
"fatty acid metabolism"	"TAIR-GO"	10	0.000226156671829302	1	0.0512586139261926
"lignin biosynthesis"	"TAIR-GO"	10	0.000000148831356031868	1	0.00711658907233404
"long-chain fatty acid metabolism"	"TAIR-GO"	10	0.00000167812682393611	1	0.024988445970292
"microtubule cytoskeleton"	"TAIR-GO"	10	0	1	0
"programmed cell death"	"TAIR-GO"	10	0	1	0
"response to cold"	"TAIR-GO"	10	0.000000000922344398966507	1	0.0042282774843227
"response to flooding"	"TAIR-GO"	10	0	1	0
"fatty acid oxidation pathway"	"AraCyc"	10	0.0000603993558406297	1	0.055615957944536
"lipases pathway"	"AraCyc"	10	0.0000689890998573437	1	0.0965947653217948
"octane oxidation"	"AraCyc"	10	0.00000238866270100308	1	0.0164583757044072
"cellular sensing and response "	"FunCat"	10	5.91862046824848E-017	1	0.000317318371291342
"chemoperception and response"	"FunCat"	10	5.91862046824848E-017	1	0.000317318371291342
"detoxification involving cytochrome P450 "	"FunCat"	10	0.00000000000667698395609882	1	0.0186561336446442
"osmosensing"	"FunCat"	10	0	1	0
"phospholipid biosynthesis "	"FunCat"	10	0.0000000000152180536544184	1	0.00186017023511449
"stress response"	"FunCat"	10	0	1	0
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	10	0.0484981537603638	1	0.318403938222577
"Flavonoid and anthocyanin metabolism"	"BioPath"	9	0.00207029344026863	2	0.042694633588391
"sterol biosynthesis"	"BioPath"	9	0.00265903878523035	1	0.0523634355654743
"abscisic acid mediated signaling"	"TAIR-GO"	9	0.000000000146427314412407	1	0.00124188538865604
"polyamine biosynthesis"	"TAIR-GO"	9	0.00000000000300912093969408	1	0.000626690611065736
"regulation of stomatal movement"	"TAIR-GO"	9	0	1	0
"polyamine biosynthesis I"	"AraCyc"	9	0.00134375313903098	1	0.102996895171487
"polyamine biosynthesis II"	"AraCyc"	9	0.0000565302310396829	1	0.0453947803942211
"polyamine biosynthesis III"	"AraCyc"	9	0.000000804166191046715	1	0.0198535338158757
"spermine biosynthesis I"	"AraCyc"	9	0.00000608705065531185	1	0.0198535338158757
"spermine biosynthesis II"	"AraCyc"	9	0.000000000916240252546457	1	0.00237523467199712
"sterol biosynthesis"	"AraCyc"	9	0.000758252450091663	1	0.061001255182485
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	9	0.0000476814851307869	1	0.0286764952497511
"intracellular signalling"	"FunCat"	9	0.00782584846478743	1	0.259834519459355
"Methane metabolism"	"KEGG"	9	0.0198285185529758	2	0.231508582579714
"Terpenoid biosynthesis"	"KEGG"	9	0.00131178775024945	1	0.0739141051965569
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	9	0.00806393698108531	1	0.145667499170622
"ascorbic acid biosynthesis"	"BioPath"	8	0.000309550212903351	1	0.0353791017078762
"flavonoid biosynthesis"	"TAIR-GO"	8	0.000000329267998137164	1	0.0042282774843227
"ascorbate glutathione cycle"	"AraCyc"	8	0.000083647544423214	1	0.040578290913907
"trehalose biosynthesis II"	"AraCyc"	8	0.035989943159138	2	0.0955221982803753
"trehalose biosynthesis III"	"AraCyc"	8	0.00162979227849485	2	0.026137652138174
"C-compound and carbohydrate utilization "	"FunCat"	8	0.00000000000083585533434955	2	0
"mRNA synthesis "	"FunCat"	8	0.000643248206420984	1	0.083651216079199
"RNA synthesis "	"FunCat"	8	0.000643248206420984	1	0.083651216079199
"transcription"	"FunCat"	8	0.00000129106477269839	1	0.0251392318543347
"transcriptional control"	"FunCat"	8	0.0000128329884002062	1	0.0186561336446442
"fermentation"	"FunCat"	7	0.0000609339778058762	1	0.021796438367187
"1- and 2-Methylnaphthalene degradation"	"KEGG"	7	0.0000298612803133964	1	0.0240865331576214
"MUTANT DATA SET"	"quantDE"	1.437694	"maxDE"	6.803120338	"MUTANT DATA SET"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	9	0.0000236835506574373	1	0.0420679979002014
"sterol biosynthesis"	"BioPath"	9	0.0000000149907358242784	1	0.00782518030448983
"sterol biosynthesis"	"AraCyc"	9	1.69610366714708E-017	1	0.0000713029043089438
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	9	0.00000000208521294142692	1	0.00561662791408179
"Biosynthesis of steroids"	"KEGG"	9	0.00000000000205886171936174	1	0.000807409703405707
"Terpenoid biosynthesis"	"KEGG"	9	2.4125978437652E-016	1	0.000181699959368179
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	9	0.0000009647599823086	1	0.00960548437968382
"Flavonoid and anthocyanin metabolism"	"BioPath"	8	0.000000153396698297655	1	0.0327652822845532
"Phenylpropanoid Metabolism"	"BioPath"	8	0.0213424412013295	1	0.228985512877326
"flavonoid biosynthesis"	"TAIR-GO"	8	0	1	0
"biogenesis of chloroplast"	"FunCat"	8	0.00115310685556213	2	0.0107833088489315
"mRNA synthesis "	"FunCat"	8	0.00000010456372984672	1	0.017748206733088
"RNA synthesis "	"FunCat"	8	0.00000010456372984672	1	0.017748206733088
"transcription"	"FunCat"	8	0.0000000000980669625011238	1	0.00489068009368575
"transcriptional control"	"FunCat"	8	0.00000000119447269198585	1	0.00358061028899519