"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"monoterpene biosynthesis"	"LitPath"	"75"	"8"	""	""
"monoterpene biosynthesis"	"AraCyc"	"65"	"7"	""	""
"secondary metabolism"	"FunCat"	"48"	"12"	""	""
"ORGAN DATA SET"	"quantDE"	"7.098111"	"maxDE"	"8.5008728"	"ORGAN DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"46"	"1.37261370882885e-26"	"17"	"1.95111234200641e-11"
"Phenylalanine metabolism"	"KEGG"	"45"	"7.53844024911369e-29"	"17"	"1.90416397288539e-12"
"Methane metabolism"	"KEGG"	"40"	"2.23262431267032e-29"	"17"	"5.10422117206178e-13"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"36"	"2.14150913032208e-32"	"16"	"1.32483344886215e-13"
"Phenylpropanoid Metabolism"	"BioPath"	"22"	"5.93344856865164e-08"	"5"	"0.00343855109391870"
"isoprenoid biosynthesis "	"FunCat"	"22"	"2.61631353941935e-08"	"5"	"0.000664672961629053"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"22"	"2.09028255184890e-09"	"5"	"0.000307014778867500"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"20"	"0.0028849391517514"	"10"	"0.000471623965885158"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"1.29189317212094e-28"	"2"	"8.18933316232412e-06"
"detoxification"	"FunCat"	"19"	"0"	"6"	"0"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"19"	"2.53505388477714e-08"	"2"	"0.0655683901759824"
"monoterpene biosynthesis"	"LitPath"	"19"	"9.50297198483918e-20"	"2"	"0.000245920499803038"
"terpenoid metabolism"	"LitPath"	"19"	"2.79379077244880e-08"	"2"	"0.0709204275397142"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"18"	"2.79709939310994e-06"	"3"	"0.100210176738863"
"Lipid signaling"	"AcylLipid"	"18"	"0.041714600429858"	"3"	"0.595831966119489"
"cation transport (Na, K, Ca , NH4, etc.) "	"FunCat"	"17"	"2.68186590286593e-28"	"2"	"5.50263071603482e-06"
"heavy metal ion transport (Cu, Fe, etc.)"	"FunCat"	"17"	"0"	"2"	"0"
"ion transport "	"FunCat"	"17"	"0"	"2"	"0"
"transport "	"FunCat"	"17"	"8.60017942554413e-33"	"2"	"5.50263071603482e-06"
"transport facilitation"	"FunCat"	"17"	"0"	"2"	"5.50263071603482e-06"
"transported compounds (substrates)"	"FunCat"	"17"	"0"	"2"	"0"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"17"	"0.0154142089465999"	"4"	"0.046927208842975"
"Biosynthesis of steroids"	"KEGG"	"13"	"0.00792609734769433"	"2"	"0.110646857634980"
"Tryptophan metabolism"	"KEGG"	"13"	"1.25525879856618e-06"	"2"	"0.0540542054678141"
"Tyrosine metabolism"	"KEGG"	"13"	"9.09134590402719e-05"	"2"	"0.0801345519389659"
"triterpene biosynthesis"	"LitPath"	"13"	"1.88664385570734e-09"	"2"	"0.00266813347663059"
"biosynthesis of secondary products derived from primary amino acids"	"FunCat"	"11"	"4.62315790858003e-12"	"3"	"4.16452088909548e-05"
"detoxification involving cytochrome P450 "	"FunCat"	"11"	"3.17523138196759e-14"	"2"	"0.00107866406325047"
"Arginine and proline metabolism"	"KEGG"	"11"	"0.00103869214532289"	"2"	"0.0898456052122908"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"8.18621346794815e-10"	"1"	"0.00576225524807555"
"Transporters required for plastid development"	"BioPath"	"10"	"0"	"1"	"0"
"cell death"	"TAIR-GO"	"10"	"1.28051904619499e-12"	"1"	"0.000996165829667815"
"fatty acid alpha-oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"fatty acid metabolism"	"TAIR-GO"	"10"	"1.80210029725186e-05"	"1"	"0.0419939968995081"
"iron ion homeostasis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"jasmonic acid biosynthesis"	"AraCyc"	"10"	"9.32099856905733e-09"	"1"	"0.0122590283319921"
"lipoxygenase pathway"	"AraCyc"	"10"	"9.52117067672595e-11"	"1"	"0.00548165721302786"
"secondary metabolism"	"FunCat"	"10"	"0.00401250765501821"	"3"	"0.0216543369907278"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"0.00036016057710642"	"1"	"0.13176529248286"
"Fluorene degradation"	"KEGG"	"10"	"4.03076090449541e-06"	"1"	"0.0542115735566066"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"1.64939020125140e-05"	"1"	"0.0679635816379563"
"fatty acid modulation"	"LitPath"	"10"	"4.11971375710719e-13"	"1"	"0.000912325517744731"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"1.13821895514218e-06"	"1"	"0.0226642661968849"
"defense response"	"TAIR-GO"	"9"	"3.14923309567542e-05"	"1"	"0.0276928174499891"
"defense response to fungi"	"TAIR-GO"	"9"	"0"	"1"	"0"
"ethylene mediated signaling pathway"	"TAIR-GO"	"9"	"1.79286536064314e-17"	"1"	"0.000168769535073685"
"jasmonic acid and ethylene-dependent systemic resistance"	"TAIR-GO"	"9"	"2.60069304580216e-15"	"1"	"0.000168769535073685"
"jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway"	"TAIR-GO"	"9"	"0"	"1"	"0"
"secondary cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"1.80305734393252e-13"	"1"	"0.000996165829667815"
"monoterpene biosynthesis"	"AraCyc"	"9"	"3.23787485637476e-14"	"1"	"0.000263025106598705"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"1.60881249890185e-16"	"1"	"8.82054617624932e-05"
"biosynthesis of amines"	"FunCat"	"9"	"1.30941051090943e-14"	"1"	"0.000317318371291342"
"Alkaloid biosynthesis I"	"KEGG"	"9"	"0.000345422819583615"	"1"	"0.106463094751995"
"Alkaloid biosynthesis II"	"KEGG"	"9"	"1.57196504710092e-07"	"1"	"0.0162219968186085"
"Aminosugars metabolism"	"KEGG"	"9"	"3.23735693838803e-06"	"1"	"0.0983571952768415"
"beta-Alanine metabolism"	"KEGG"	"9"	"8.37220463156444e-05"	"1"	"0.0904389252628913"
"Glycine, serine and threonine metabolism"	"KEGG"	"9"	"0.0049044590678621"	"1"	"0.232573757509160"
"Histidine metabolism"	"KEGG"	"9"	"6.91064148856971e-06"	"1"	"0.0827233302481064"
"toxin catabolism"	"TAIR-GO"	"8"	"4.54172180606418e-05"	"4"	"0.000231947838717105"
"storage protein"	"FunCat"	"8"	"1.54410775951342e-11"	"2"	"5.36304342066452e-05"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"7"	"1.29350622131552e-06"	"1"	"0.00449923909494730"
"STRESS DATA SET"	"quantDE"	"2.346239"	"maxDE"	"8.486979"	"STRESS DATA SET"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"27"	"1.36757527945578e-17"	"4"	"0.000599046503722577"
"terpenoid metabolism"	"LitPath"	"27"	"1.59750744733408e-17"	"4"	"0.000699221122526927"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"0"	"2"	"0"
"monoterpene biosynthesis"	"LitPath"	"19"	"1.32400626585926e-21"	"2"	"0.000126874365400540"
"secondary metabolism"	"FunCat"	"10"	"2.35842735946735e-12"	"3"	"3.70877484103962e-05"
"monoterpene biosynthesis"	"AraCyc"	"9"	"2.96701189913484e-21"	"1"	"1.69158243969400e-05"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"1.38554777044816e-23"	"1"	"5.64615331338862e-06"
"HORMONE DATA SET"	"quantDE"	"2.291016"	"maxDE"	"7.5559991"	"HORMONE DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"34"	"2.50347970244913e-28"	"5"	"4.46148946991469e-05"
"Phenylpropanoid Metabolism"	"BioPath"	"33"	"1.63687075624139e-10"	"6"	"0.00157872209708570"
"glucosinolate biosynthesis"	"TAIR-GO"	"20"	"2.17961158302773e-25"	"2"	"1.58555767502078e-05"
"response to UV"	"TAIR-GO"	"20"	"1.4163029330852e-22"	"2"	"7.92852935828787e-05"
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	"20"	"8.44643136130883e-30"	"2"	"7.2348976290409e-06"
"secondary metabolism"	"FunCat"	"20"	"2.87899821624672e-15"	"4"	"0.000258750272288439"
"Ascorbate and aldarate metabolism"	"KEGG"	"20"	"3.30899927007138e-19"	"2"	"0.000618334395969468"
"Fluorene degradation"	"KEGG"	"20"	"7.60734279818678e-24"	"2"	"0.000128118897522181"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"20"	"2.0019067022928e-22"	"2"	"0.000189708871407559"
"flavonoid, anthocyanin, and proanthocyanidin biosynthesis"	"LitPath"	"20"	"1.99123127966227e-11"	"2"	"0.00412591453321598"
"Glucosinolate Metabolism"	"LitPath"	"20"	"7.9106782054329e-06"	"2"	"0.0204466210392002"
"proanthocyanidin biosynthesis"	"LitPath"	"20"	"1.99123127966227e-11"	"2"	"0.00412591453321598"
"monoterpenoid biosynthesis"	"TAIR-GO"	"19"	"2.56153025954214e-31"	"2"	"1.15181795904736e-06"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"19"	"1.30710799713247e-05"	"2"	"0.0736131419068453"
"monoterpene biosynthesis"	"LitPath"	"19"	"2.32518439114863e-16"	"2"	"0.000284106234285798"
"terpenoid metabolism"	"LitPath"	"19"	"1.42310156972244e-05"	"2"	"0.0795371135145339"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"15"	"1.14745715786146e-11"	"3"	"0.00059504944055957"
"anthocyanin biosynthesis"	"AraCyc"	"14"	"1.14592942410389e-18"	"2"	"0.000114875361658065"
"Flavonoid biosynthesis"	"KEGG"	"14"	"7.2308012330891e-16"	"2"	"0.000156956091961310"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"13"	"1.55369550898873e-08"	"3"	"0.00234303477150882"
"detoxification"	"FunCat"	"13"	"0"	"3"	"0"
"core phenylpropanoid metabolism"	"BioPath"	"12"	"6.92340999157496e-06"	"2"	"0.0111222149555631"
"colanic acid building blocks biosynthesis"	"AraCyc"	"12"	"5.35706080985664e-07"	"3"	"0.00162503447113325"
"detoxification involving cytochrome P450 "	"FunCat"	"11"	"6.88979872659134e-18"	"2"	"0.000184711495209600"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"1.25081936406300e-17"	"1"	"0.000107532204188294"
"anthocyanin biosynthesis "	"TAIR-GO"	"10"	"0"	"1"	"0"
"fatty acid metabolism"	"TAIR-GO"	"10"	"1.05118896569663e-06"	"1"	"0.0129063131059226"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"5.14548560294019e-12"	"1"	"0.00069733801261838"
"positive regulation of transcription"	"TAIR-GO"	"10"	"8.03171260603596e-16"	"1"	"0.000141188066129057"
"regulation of transcription"	"TAIR-GO"	"10"	"0"	"1"	"0"
"flavonoid biosynthesis"	"AraCyc"	"10"	"3.15023928797965e-08"	"1"	"0.0253563011774196"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"10"	"9.47666160360035e-14"	"1"	"0.000495534542423803"
"lignin biosynthesis"	"AraCyc"	"10"	"3.25467603842112e-05"	"1"	"0.06197222522263"
"suberin biosynthesis"	"AraCyc"	"10"	"6.06491718529225e-08"	"1"	"0.0116447710731596"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"10"	"2.33186368903568e-05"	"1"	"0.103677465689947"
"anthocyanin biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"fatty acid modulation"	"LitPath"	"10"	"2.83234418718218e-11"	"1"	"0.00100355806951920"
"general phenylpropanoid pathway"	"LitPath"	"10"	"0"	"1"	"0"
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	"9"	"2.2699142971225e-05"	"1"	"0.0389790570046311"
"dTDP-rhamnose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"monoterpene biosynthesis"	"AraCyc"	"9"	"9.74384138920247e-14"	"1"	"0.000249223555690583"
"plant monoterpene biosynthesis"	"AraCyc"	"9"	"4.8860152589573e-16"	"1"	"8.35630690381514e-05"
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	"9"	"0.000195546675498274"	"1"	"0.076843056761444"
"Glutathione metabolism"	"BioPath"	"8"	"0.0258452031152666"	"1"	"0.163912837485117"
"Sequestration of phenylpropanoids (cytosol --> vacuole)"	"BioPath"	"8"	"9.5651561425162e-15"	"1"	"0.000107532204188294"
"toxin catabolism"	"TAIR-GO"	"8"	"4.2970409790169e-06"	"1"	"0.0392626595370774"
"MUTANT DATA SET"	"quantDE"	"4.450598"	"maxDE"	"8.25825671"	"MUTANT DATA SET"
"isoprenoid biosynthesis "	"FunCat"	"17"	"4.73737515475088e-12"	"3"	"0.000261593731686971"
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	"17"	"4.96935442506781e-13"	"3"	"0.000150796710127714"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"15"	"1.51321827799831e-07"	"3"	"0.00448570658284432"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"14"	"0"	"2"	"0"
"Biosynthesis of steroids"	"KEGG"	"13"	"1.14484964855466e-10"	"2"	"0.000174905794161966"
"triterpene biosynthesis"	"LitPath"	"13"	"3.26980357106835e-16"	"2"	"0.000124417051861425"
"detoxification"	"FunCat"	"11"	"0"	"2"	"0"
"detoxification involving cytochrome P450 "	"FunCat"	"11"	"1.66385989538533e-19"	"2"	"2.88072069451344e-05"
"additional photosystem II components"	"BioPath"	"10"	"6.62041596349448e-11"	"1"	"0.00124135788342662"
"ATP synthase components"	"BioPath"	"10"	"1.35481586304562e-17"	"1"	"7.64998564795717e-05"
"Intermediary Carbon Metabolism"	"BioPath"	"10"	"4.53107252183803e-06"	"1"	"0.0193076401239529"
"Photosystems "	"BioPath"	"10"	"8.45017232094078e-07"	"1"	"0.00900888758722475"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"10"	"1.15850558603200e-18"	"1"	"7.75762251993671e-05"
"fatty acid metabolism"	"TAIR-GO"	"10"	"2.8653105098423e-11"	"1"	"0.00226463925182409"
"proton transport"	"TAIR-GO"	"10"	"1.15850558603200e-18"	"1"	"7.75762251993671e-05"
"proton-transporting ATP synthase, catalytic core (sensu Eukaryota)"	"TAIR-GO"	"10"	"0"	"1"	"0"
"Calvin cycle"	"AraCyc"	"10"	"7.57811527678125e-17"	"1"	"0.00238209371771052"
"glycolysis and gluconeogenesis"	"FunCat"	"10"	"0.00137336631248034"	"1"	"0.131881553912366"
"photosynthesis"	"FunCat"	"10"	"8.8687740998514e-07"	"1"	"0.0231707463525561"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"6.24513410535110e-11"	"1"	"0.00172664332140922"
"Carbon fixation"	"KEGG"	"10"	"1.7527946508955e-07"	"1"	"0.0113317943650993"
"Fluorene degradation"	"KEGG"	"10"	"2.89633080402236e-13"	"1"	"0.000612674289989812"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"1.47833868749491e-12"	"1"	"0.000791384537613048"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"10"	"4.19119458463744e-11"	"1"	"0.00216663257632381"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"10"	"1.27778439420976e-07"	"1"	"0.0252224678662227"
"fatty acid modulation"	"LitPath"	"10"	"1.59795963163618e-18"	"1"	"0.000121643402365964"
"secondary metabolism"	"FunCat"	"8"	"3.05261233131257e-05"	"2"	"0.00380951229823032"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"7"	"5.42444613561328e-11"	"1"	"0.000216327751930907"