"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN TWO DATA SETS" "sum.of.scores" "sum.of.genes" "ORGAN DATA SET" "quantDE" 1.096439 "maxDE" 4.4799196 "ORGAN DATA SET" "STRESS DATA SET" "quantDE" 1.727766 "maxDE" 9.427174 "STRESS DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" 36 1.68893577709745E-022 12 0.0000000144269145865879 "Cell Wall Carbohydrate Metabolism" "BioPath" 28 0.000000989927324834017 6 0.0113524204553552 "Methane metabolism" "KEGG" 26 1.48974557406599E-018 11 0.0000000136611782479398 "Phenylalanine metabolism" "KEGG" 26 4.83523960131949E-015 11 0.0000000314464920654107 "Prostaglandin and leukotriene metabolism" "KEGG" 26 8.19356969069636E-024 11 0.000000000977425349713361 "Intermediary Carbon Metabolism" "BioPath" 20 0.000000599094410268498 3 0.0320964698219775 "glycolysis and gluconeogenesis" "FunCat" 18 0.0000506276839113638 4 0.00611936334648317 "acetyl-CoA assimilation" "AraCyc" 16 0.00000000107022949805018 2 0.0075019579226658 "serine-isocitrate lyase pathway" "AraCyc" 16 0.0000000741395293654514 2 0.0191113617608737 "TCA cycle variation VII" "AraCyc" 16 0.0000185024000336009 2 0.05910702165555 "TCA cycle variation VIII" "AraCyc" 16 0.000000136447236785703 2 0.0239471794741404 "Fructose and mannose metabolism" "KEGG" 16 0.000000116410505576289 3 0.00930832355716772 "Reductive carboxylate cycle (CO2 fixation)" "KEGG" 16 0.000000000000390977652208628 2 0.00530523045336434 "detoxification" "FunCat" 14 0 3 0 "Phenylpropanoid Metabolism" "BioPath" 12 0.0295789517193494 2 0.151435697008052 "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" 12 0.0000527833277862166 2 0.0735651110249016 "GDP-carbohydrate biosynthesis" "BioPath" 10 0.000000000000872681790593161 1 0.00258732190739605 "Glucosyltransferases for benzoic acids" "BioPath" 10 0.00000000327370453964194 1 0.00442087449963415 "fatty acid metabolism" "TAIR-GO" 10 0.0000000000045596206952976 1 0.00416165680305497 "colanic acid building blocks biosynthesis" "AraCyc" 10 0.000839350453211896 1 0.159726748280325 "dTDP-rhamnose biosynthesis" "AraCyc" 10 0.0000543665194728941 1 0.103746032579122 "flavonol biosynthesis" "AraCyc" 10 0.0000000100393444922929 1 0.0262437444968099 "galactose degradation I" "AraCyc" 10 0.000000000000109489774061925 1 0.0032244315764354 "glucose conversion" "AraCyc" 10 0.0000249037980011561 1 0.0917724813466825 "glyoxylate cycle" "AraCyc" 10 0.00000910228378102546 1 0.0341084333898921 "lactose degradation IV" "AraCyc" 10 0.000000000000109489774061925 1 0.0032244315764354 "leucine biosynthesis" "AraCyc" 10 0.00000000332033499442831 1 0.0171213963527595 "TCA cycle -- aerobic respiration" "AraCyc" 10 0.000505986454343255 1 0.120331120840688 "UDP-glucose conversion" "AraCyc" 10 0.0000196041138980141 1 0.087879485819068 "C-compound and carbohydrate glyoxylate cycle " "FunCat" 10 4.69778752493898E-017 1 0.000304634529580239 "detoxification involving cytochrome P450 " "FunCat" 10 0.0000000000000138468169984411 1 0.00632542164328936 "glyoxylate cycle" "FunCat" 10 4.69778752493898E-017 1 0.000304634529580239 "isoprenoid biosynthesis " "FunCat" 10 0.00198519048362127 2 0.0236603331647143 "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" 10 0.00067903850853041 2 0.0162770808579259 "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" 10 0.034284889485818 1 0.278134732858724 "Ascorbate and aldarate metabolism" "KEGG" 10 0.0000190106915768867 1 0.0751597955935285 "Citrate cycle (TCA cycle)" "KEGG" 10 0.000258997646030179 1 0.171208276862112 "Fluorene degradation" "KEGG" 10 0.00000015556608316712 1 0.029544756745228 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 0.000000688744271159094 1 0.0373841355338389 "Glyoxylate and dicarboxylate metabolism" "KEGG" 10 0.0000134540249859821 1 0.0914891372425585 "Starch and sucrose metabolism" "KEGG" 10 0.031396947081927 2 0.155856620956428 "fatty acid modulation" "LitPath" 10 1.430123107577E-025 1 0.0000130332216820676 "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" 8 0.00256020987945261 1 0.0734351948850369 "pectin metabolism" "BioPath" 8 0.0047799037091397 3 0.0270873109118717 "fatty acid biosynthesis" "TAIR-GO" 8 0.0000000000881896615318336 1 0.00148669311103283 "gluconeogenesis" "AraCyc" 8 0.0068264042600944 2 0.0191113617608737 "sucrose degradation III" "AraCyc" 8 0.00000351373940094427 2 0.000977933314075463 "lipid transport " "FunCat" 8 0.0000000000306270588487622 1 0.00275326761819414 "storage protein" "FunCat" 8 0.000000000000396468044084306 2 0.0000097088878766998 "transport " "FunCat" 8 0.000000000000117033311384677 1 0.000304634529580239 "transport facilitation" "FunCat" 8 0 1 0.000304634529580239 "transported compounds (substrates)" "FunCat" 8 0 1 0 "Synthesis of fatty acids in plastids" "AcylLipid" 8 0.006395125664514 1 0.150451244507019 "HORMONE DATA SET" "quantDE" 0.4133163 "maxDE" 2.1675115 "HORMONE DATA SET" "lipases pathway" "AraCyc" 9 0 1 0 "degradation " "FunCat" 9 0.000000000000082692084887985 1 0.000397681718115787 "intracellular signalling" "FunCat" 9 0.0000000000231752080525167 1 0.00179451163635216 "lipid, fatty acid and isoprenoid degradation" "FunCat" 9 0.000000000000244343136574798 1 0.000429311526801416 "second messenger mediated signal transduction" "FunCat" 9 4.1373321355218E-022 1 0.00000741148057811799 "Lipid signaling" "AcylLipid" 9 0 1 0 "MUTANT DATA SET" "quantDE" 0.866497 "maxDE" 3.714519417 "MUTANT DATA SET"