"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"abscisic acid biosynthesis"	"TAIR-GO"	45	7		
"secondary metabolism"	"FunCat"	37	4		
"ORGAN DATA SET"	"quantDE"	4.410999	"maxDE"	6.1464701	"ORGAN DATA SET"
"Synthesis and storage of oil"	"AcylLipid"	34	1.52256729273409E-041	9	0.00000000000379400575227432
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	27	0.000299673393339167	6	0.274777184864946
"glycolysis and gluconeogenesis"	"FunCat"	22	0.00000840520695085146	4	0.0230974936554835
"gibberellic acid biosynthesis"	"TAIR-GO"	20	2.68640433907743E-023	2	0.000102147430910872
"plant / fungal specific systemic sensing and response "	"FunCat"	20	1.58905626514655E-017	2	0.00217449227129469
"plant hormonal regulation"	"FunCat"	20	1.58905626514655E-017	2	0.00217449227129469
"Diterpenoid biosynthesis"	"KEGG"	20	4.9629676977503E-023	2	0.0000958607321404693
"Pyruvate metabolism"	"KEGG"	20	0.00000000000484727624994846	3	0.00232046244104693
"Gibberellin metabolism"	"LitPath"	20	0.000000000000282749451010381	2	0.0071488928941991
"giberelin biosynthesis"	"LitPath"	20	1.49836793367626E-016	2	0.00320124115095659
"acyl-CoA binding"	"TAIR-GO"	19	0	2	0
"lipid transport"	"TAIR-GO"	19	6.98083239590851E-029	2	0.0000221723870950216
"abscisic acid biosynthesis"	"TAIR-GO"	12	0.0000000000000570144825431813	2	0.0000747179662994397
"abscisic acid biosynthesis"	"AraCyc"	12	2.44576746658761E-020	2	0.00000918915109820307
"abscisic acid biosynthesis"	"LitPath"	12	0.0000000000177372864214248	2	0.000677889095515924
"Carotenoid and abscisic acid metabolism"	"LitPath"	12	0.0000206858173857302	2	0.0131327508114779
"Intermediary Carbon Metabolism"	"BioPath"	10	0.00000259786661864568	1	0.0600819647381705
"gibberellic acid mediated signaling"	"TAIR-GO"	10	0.000000000000619013318950024	1	0.000781624257685628
"microsome"	"TAIR-GO"	10	0	1	0
"oxygen binding"	"TAIR-GO"	10	3.50058572180662E-018	1	0.0000794515042039193
"gibberellin biosynthesis"	"AraCyc"	10	0.000000000057674057029576	1	0.00606178226066075
"glyoxylate cycle"	"AraCyc"	10	0.0000000147583062054117	1	0.0216791126147052
"sucrose biosynthesis"	"AraCyc"	10	0.000000000976241947332455	2	0.000943684430005663
"TCA cycle variation VII"	"AraCyc"	10	0.0000891283247572027	1	0.154734348549859
"TCA cycle variation VIII"	"AraCyc"	10	0.00000316224579197247	1	0.0856977702375644
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	10	0.000000211725392702351	1	0.0182111973793152
"glyoxylate cycle"	"FunCat"	10	3.97393246270311E-016	1	0.000579514357743166
"isoprenoid biosynthesis "	"FunCat"	10	0.00832782274020517	3	0.010057099503671
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	10	0.00311781060283662	3	0.00612428486657894
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	10	0.000646662034316553	2	0.0192775704817887
"secondary metabolism"	"FunCat"	10	0.000738388186529461	1	0.207268274156059
"transport "	"FunCat"	10	7.71342053767555E-017	3	0
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	10	0.0000000418213898069699	1	0.0203977917675224
"degradation of abscisic acid"	"LitPath"	10	0.000000000364035362367839	1	0.00344112183428118
"Benzoate degradation via CoA ligation"	"KEGG"	8	0.0015090699859489	2	0.0327307360830726
"Butanoate metabolism"	"KEGG"	8	0.00000155662325519312	2	0.000934241167261652
"Fatty acid biosynthesis (path 2)"	"KEGG"	8	0.000000000738551398119458	2	0.0000528561385822702
"Fatty acid metabolism"	"KEGG"	8	0.000104082454504607	2	0.00231556148272102
"Lysine degradation"	"KEGG"	8	0.0000000215164765499867	2	0.000635742704660126
"Propanoate metabolism"	"KEGG"	8	0.00000355456904974985	2	0.00160527518083925
"Tryptophan metabolism"	"KEGG"	8	0.00000244644507338847	2	0.00231556148272102
"Valine, leucine and isoleucine degradation"	"KEGG"	8	0.0000139325846180373	2	0.00251904397787777
"secondary metabolism"	"TAIR-GO"	7	0	1	0
"degradation "	"FunCat"	7	0.000203109943417533	1	0.0511213948169179
"protein degradation "	"FunCat"	7	0.0000169931270789851	1	0.0286196250322099
"STRESS DATA SET"	"quantDE"	1.281507	"maxDE"	2.998154	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	1.630581	"maxDE"	3.6425774	"HORMONE DATA SET"
"secondary metabolism"	"FunCat"	20	0.000000000000631638565894787	2	0.0308926595257677
"intracellular signalling"	"FunCat"	17.5	0.0000000000117056018953822	4	0.000354127870012565
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	14	0.000191469781291841	3	0.0117238788584356
"Glutathione metabolism"	"BioPath"	14	0.00000000258744668874863	3	0.000461645252574237
"toxin catabolism"	"TAIR-GO"	14	0.0000000000211467644634502	3	0.00249388202050526
"isoprenoid biosynthesis "	"FunCat"	14	0.00000712978898800992	3	0.00490267178275389
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	14	0.00000139133029731741	3	0.00293787363938366
"Cell Wall Carbohydrate Metabolism"	"BioPath"	12	0.0392598013461259	2	0.290638732891289
"Glutathione metabolism"	"KEGG"	12	0.00000000395919501651462	2	0.00553896556276822
"Benzoate degradation via CoA ligation"	"KEGG"	11.5	0.00000232527323977538	3	0.00701096085218079
"gibberellic acid biosynthesis"	"TAIR-GO"	10	0.000000012338347418095	1	0.00862420492940681
"glucosinolate biosynthesis"	"TAIR-GO"	10	0.00000000110209900659374	1	0.0044992390949473
"gibberellin biosynthesis"	"AraCyc"	10	0.00000000000117924105109313	1	0.0029971165961126
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	10	2.41733742367461E-015	1	0.000468126367452712
"biosynthesis of phenylpropanoids"	"FunCat"	10	0.0000037450377464553	1	0.0577900985301809
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	10	0.0000037450377464553	1	0.0577900985301809
"plant / fungal specific systemic sensing and response "	"FunCat"	10	0.000000104620047605175	1	0.0196187766490789
"plant hormonal regulation"	"FunCat"	10	0.000000104620047605175	1	0.0196187766490789
"transport "	"FunCat"	10	7.0081832412586E-018	2	0.0000014173442753423
"transport facilitation"	"FunCat"	10	0	2	0.0000014173442753423
"Diterpenoid biosynthesis"	"KEGG"	10	0.000000000246754753873258	1	0.00462654427165653
"Phosphatidylinositol signaling system"	"KEGG"	10	0.0000000149031274012302	2	0.00302799312223536
"Signal Transduction"	"KEGG"	10	0.0000000223863342197837	2	0.00329220092350829
"Gibberellin metabolism"	"LitPath"	10	0.000000000735183554504937	1	0.00344112183428118
"giberelin biosynthesis"	"LitPath"	10	0.0000000000146833866936197	1	0.00198937964363037
"Glucosinolate Metabolism"	"LitPath"	10	0.0000000243512486244926	1	0.00430944927888316
"Inositol phosphate metabolism"	"KEGG"	9.5	0.000175014380396339	2	0.0514106215413619
"Nicotinate and nicotinamide metabolism"	"KEGG"	9.5	0.0000240184452721278	2	0.033724122659857
"abscisic acid biosynthesis"	"TAIR-GO"	9	0.0000000000000967300532296393	1	0.000484092348348367
"ascorbic acid biosynthesis"	"BioPath"	8	0.0000000179582384418213	1	0.00589463261390658
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	8	0.000171128362550596	1	0.0398398042704415
"fatty acid biosynthesis"	"TAIR-GO"	8	0.00000911047892191128	1	0.0159372428305671
"lipid transport "	"FunCat"	8	0.0000000000249032121875787	1	0.00347911597483607
"transported compounds (substrates)"	"FunCat"	8	0	1	0
"Synthesis of fatty acids in plastids"	"AcylLipid"	8	0.0000466314813460639	1	0.0321776813585654
"brassinosteroid mediated signaling"	"TAIR-GO"	7	0.000000000000512212600844187	1	0.000168769535073685
"detection of brassinosteroid stimulus"	"TAIR-GO"	7	0	1	0
"growth"	"TAIR-GO"	7	0.000737319355264318	1	0.0389474891358284
"leaf morphogenesis"	"TAIR-GO"	7	0.00000000000719035313705289	1	0.000502177581415069
"multidimensional cell growth "	"TAIR-GO"	7	0	1	0
"phosphorylation"	"TAIR-GO"	7	1.60840375075069E-015	1	0
"photoreactive repair"	"TAIR-GO"	7	0.000000000000512212600844187	1	0.000168769535073685
"protein amino acid phosphorylation"	"TAIR-GO"	7	0.0000000188758129839064	1	0.00164674759612626
"response to auxin stimulus"	"TAIR-GO"	7	0.000000324202231997849	1	0.00573772331465841
"response to UV"	"TAIR-GO"	7	0.0000218600251522943	1	0.012033165218356
"Calvin cycle"	"AraCyc"	7	0.0000058511927727342	1	0.0285348526851692
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	7	0.000000000520331981728291	1	0.0035267190468117
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	7	0.000000000520331981728291	1	0.0035267190468117
"ribose degradation"	"AraCyc"	7	0.0000000000262839558441019	1	0.0029971165961126
"superpathway of gluconate degradation"	"AraCyc"	7	0.0000000000262839558441019	1	0.0053556397149674
"MUTANT DATA SET"	"quantDE"	1.707755	"maxDE"	5.770105172	"MUTANT DATA SET"
"abscisic acid biosynthesis"	"TAIR-GO"	9	0.0000000000000967300532296393	1	0.000484092348348367
"auxin mediated signaling pathway"	"TAIR-GO"	9	7.7912781601031E-019	1	0.0000326597153245875
"molybdenum incorporation into molybdenum-molybdopterin complex"	"TAIR-GO"	9	0	1	0
"response to stress"	"TAIR-GO"	9	1.4569968810518E-016	1	0.000065208381011973
"sugar mediated signaling"	"TAIR-GO"	9	4.29664684732469E-015	1	0.000162466979017529
"secondary metabolism"	"FunCat"	8	5.2564984552E-015	1	0.000125484521