"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"tryptophan biosynthesis"	"TAIR-GO"	"334"	"41"	""	""
"tryptophan biosynthesis"	"TAIR-GO"	"334"	"41"	""	""
"Phenylpropanoid Metabolism"	"BioPath"	"226"	"32"	""	""
"Shikimate pathway"	"LitPath"	"192"	"24"	""	""
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"186"	"23"	""	""
"Trp biosyntesis"	"LitPath"	"182"	"22"	""	""
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"112"	"14"	""	""
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"43"	"13"	""	""
"camalexin biosynthesis"	"AraCyc"	"42"	"6"	""	""
"camalexin biosynthesis"	"AraCyc"	"42"	"6"	""	""
"metabolism of the cysteine - aromatic group"	"FunCat"	"36"	"4"	""	""
"indole phytoalexin biosynthesis"	"TAIR-GO"	"21"	"3"	""	""
"Ascorbate and aldarate metabolism"	"KEGG"	"21"	"3"	""	""
"Fluorene degradation"	"KEGG"	"21"	"3"	""	""
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"21"	"3"	""	""
"ORGAN DATA SET"	"quantDE"	"4.330774"	"maxDE"	"7.7802687"	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	"5.944632"	"maxDE"	"11.63011"	"STRESS DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"96"	"1.27034724859855e-55"	"13"	"9.69845759937917e-09"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"94"	"8.14113778471637e-101"	"12"	"3.08217566238242e-14"
"Shikimate pathway"	"LitPath"	"94"	"1.43224381056026e-67"	"12"	"1.50550283281300e-10"
"tryptophan biosynthesis"	"TAIR-GO"	"88"	"4.38752815773544e-137"	"11"	"7.39769307448e-19"
"Trp biosyntesis"	"LitPath"	"88"	"6.33265969768642e-100"	"11"	"5.3257681440954e-15"
"tryptophan biosynthesis"	"AraCyc"	"78"	"2.84983537654349e-121"	"10"	"8.32771924381401e-17"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"58"	"9.67798211486176e-65"	"7"	"5.02558643410052e-08"
"response to pathogenic bacteria"	"TAIR-GO"	"48"	"0"	"7"	"0"
"amino acid metabolism"	"FunCat"	"26"	"5.08024371594105e-13"	"3"	"0.0159293253220789"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"17"	"5.06653030829334e-09"	"6"	"0.0002572358435093"
"metabolism of the cysteine - aromatic group"	"FunCat"	"16"	"1.81386142759132e-20"	"2"	"9.2396419083167e-05"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"10"	"0.000143194934050542"	"1"	"0.0584473299243845"
"anthranilate synthase complex"	"TAIR-GO"	"10"	"1.11913919239852e-15"	"1"	"0.000308978071904131"
"methionine biosynthesis"	"TAIR-GO"	"10"	"3.23747963248703e-12"	"1"	"0.00181252687021739"
"response to wounding"	"TAIR-GO"	"10"	"7.73161647083238e-05"	"1"	"0.0570881764112636"
"methionine biosynthesis II"	"AraCyc"	"10"	"1.60461121101757e-09"	"1"	"0.00643958883593563"
"Methane metabolism"	"KEGG"	"10"	"5.88631877444222e-06"	"5"	"0.000574394601023954"
"Methionine metabolism"	"KEGG"	"10"	"4.12661799781669e-08"	"1"	"0.0275058551600016"
"Phenylalanine metabolism"	"KEGG"	"10"	"0.000108264339559140"	"5"	"0.000841866649378736"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"10"	"7.1321483416238e-08"	"5"	"0.000171474675397564"
"glycolysis and gluconeogenesis"	"FunCat"	"8"	"0.0370992182805054"	"2"	"0.100563237577469"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"response to auxin stimulus"	"TAIR-GO"	"7"	"3.61587162612511e-06"	"1"	"0.0102811097748690"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"plant / fungal specific systemic sensing and response "	"FunCat"	"7"	"3.7503526149634e-06"	"1"	"0.0138438100371371"
"plant hormonal regulation"	"FunCat"	"7"	"3.7503526149634e-06"	"1"	"0.0138438100371371"
"Ascorbate and aldarate metabolism"	"KEGG"	"7"	"0.000188324791960165"	"1"	"0.0416690143706861"
"Fluorene degradation"	"KEGG"	"7"	"5.72737016995872e-06"	"1"	"0.0158461657285181"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"7"	"1.67999425910227e-05"	"1"	"0.0201854525427076"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"
"HORMONE DATA SET"	"quantDE"	"2.028436"	"maxDE"	"6.8884869"	"HORMONE DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"33"	"2.40542535151932e-09"	"5"	"0.0109644843070079"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"29"	"3.51565918424323e-17"	"4"	"0.000828050235644793"
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	"27"	"1.32248385771723e-28"	"3"	"0.000138710209876121"
"lipid, fatty acid and isoprenoid degradation"	"FunCat"	"22"	"5.16293572410309e-25"	"3"	"6.85435999198402e-05"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"20"	"9.56902348288802e-11"	"2"	"0.0230718709887052"
"tryptophan biosynthesis"	"TAIR-GO"	"20"	"4.08041154762875e-18"	"2"	"0.000976704136228333"
"Fatty acid metabolism"	"KEGG"	"20"	"5.38361874387325e-15"	"2"	"0.00448884622656537"
"Shikimate pathway"	"LitPath"	"20"	"4.71799521675618e-10"	"2"	"0.0170473503859511"
"Trp biosyntesis"	"LitPath"	"20"	"8.45685637424788e-17"	"2"	"0.00140781709464259"
"fatty acid beta oxidation complex"	"BioPath"	"19"	"3.27558413805747e-18"	"3"	"8.45878262560976e-05"
"hypersensitive response"	"TAIR-GO"	"14"	"2.11791815741213e-17"	"2"	"3.13894982901838e-05"
"amino acid metabolism"	"FunCat"	"14"	"0.000262416319438973"	"2"	"0.0577658643981792"
"core phenylpropanoid metabolism"	"BioPath"	"12"	"1.96113153947845e-05"	"2"	"0.0134625405490347"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"12"	"1.15788217078503e-06"	"2"	"0.00870036079884215"
"Phenylpropanoid pathway"	"LitPath"	"12"	"0.00953254403737854"	"2"	"0.0996129526865146"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"11"	"6.92668588072178e-05"	"3"	"0.0163689098313111"
"Regulatory enzymes"	"BioPath"	"10"	"1.09450185019059e-14"	"1"	"0.000368627094579356"
"carotenoid biosynthesis"	"TAIR-GO"	"10"	"4.04746159006782e-10"	"1"	"0.00383657134631592"
"fatty acid metabolism"	"TAIR-GO"	"10"	"1.22164143389392e-05"	"1"	"0.0362187261967477"
"long-chain fatty acid metabolism"	"TAIR-GO"	"10"	"6.66438676779403e-08"	"1"	"0.0174240853746295"
"plastid organization and biogenesis"	"TAIR-GO"	"10"	"3.13318466702585e-15"	"1"	"0.000847134003163795"
"response to bacteria"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to high light intensity"	"TAIR-GO"	"10"	"3.13318466702585e-15"	"1"	"0.000426757003132605"
"response to temperature"	"TAIR-GO"	"10"	"1.36065434248844e-14"	"1"	"0.000426757003132605"
"mixed acid fermentation"	"AraCyc"	"10"	"7.85814516477679e-06"	"1"	"0.0430902322373026"
"sorbitol fermentation"	"AraCyc"	"10"	"0.000990593911240182"	"1"	"0.129553939506427"
"tryptophan biosynthesis"	"AraCyc"	"10"	"1.69254486458510e-06"	"1"	"0.0248273707690105"
"biogenesis of cell wall"	"FunCat"	"10"	"1.31593133899167e-05"	"1"	"0.105027599092565"
"metabolism of the cysteine - aromatic group"	"FunCat"	"10"	"3.40620170234069e-11"	"1"	"0.00311800854633028"
"Accessory protein/regulatory protein"	"LitPath"	"10"	"0"	"1"	"0"
"ethylene biosynthesis"	"TAIR-GO"	"9"	"7.82645773182628e-10"	"1"	"0.00383657134631592"
"acrylonitrile degradation"	"AraCyc"	"9"	"6.46033211498383e-16"	"1"	"0.000522888593697345"
"aldoxime degradation"	"AraCyc"	"9"	"6.46033211498383e-16"	"1"	"0.000522888593697345"
"IAA biosynthesis"	"AraCyc"	"9"	"2.78264894810034e-07"	"1"	"0.00548165721302786"
"IAA biosynthesis I"	"AraCyc"	"9"	"9.789641684009e-09"	"1"	"0.00304433761031007"
"nitrogen and sulfur utilization "	"FunCat"	"9"	"9.31393839250379e-10"	"1"	"0.00379057407477352"
"Benzoate degradation via CoA ligation"	"KEGG"	"9"	"0.00130931841790658"	"1"	"0.223718410090695"
"Cyanoamino acid metabolism"	"KEGG"	"9"	"7.5466697189962e-08"	"1"	"0.0253758235574957"
"Nitrogen metabolism"	"KEGG"	"9"	"8.95207924854258e-05"	"1"	"0.0401571404009386"
"Nucleotide Metabolism"	"KEGG"	"9"	"0.00154834366501709"	"1"	"0.176067193979853"
"Pyrimidine metabolism"	"KEGG"	"9"	"5.26037747552734e-06"	"1"	"0.0600827475519014"
"Tryptophan metabolism"	"KEGG"	"9"	"1.13510749668800e-06"	"1"	"0.0448566186245196"
"ascorbic acid biosynthesis"	"BioPath"	"8"	"1.32456029070162e-05"	"2"	"0.00151504087905131"
"4-hydroxyproline degradation"	"AraCyc"	"8"	"3.75936803781731e-08"	"1"	"0.00459554010912514"
"arginine degradation IX"	"AraCyc"	"8"	"3.75936803781731e-08"	"1"	"0.00548165721302786"
"proline degradation I"	"AraCyc"	"8"	"1.08572858056581e-05"	"1"	"0.0180719665428926"
"proline degradation II"	"AraCyc"	"8"	"2.71598224595346e-08"	"1"	"0.00459554010912514"
"fatty acid beta-oxidation"	"TAIR-GO"	"7"	"3.35970091419453e-07"	"1"	"0.00208631840369699"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"L-serine biosynthesis"	"TAIR-GO"	"7"	"3.95628830163092e-12"	"1"	"0.000143324282093345"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"cysteine biosynthesis I"	"AraCyc"	"7"	"0.0024099569992182"	"1"	"0.0524103893983596"
"cysteine biosynthesis II"	"AraCyc"	"7"	"7.67201347836051e-06"	"1"	"0.0196754681312370"
"fatty acid oxidation pathway"	"AraCyc"	"7"	"0.000340007080052659"	"1"	"0.0136196388390815"
"isoleucine degradation I"	"AraCyc"	"7"	"0.000340007080052659"	"1"	"0.0213366546519214"
"isoleucine degradation III"	"AraCyc"	"7"	"2.22853952212938e-06"	"1"	"0.00548165721302786"
"leucine degradation I"	"AraCyc"	"7"	"0.000340007080052659"	"1"	"0.0213366546519214"
"leucine degradation II"	"AraCyc"	"7"	"2.22853952212938e-06"	"1"	"0.00548165721302786"
"phosphoglycerate dehydrogenase, cysteine biosynthesis II"	"AraCyc"	"7"	"9.2546965330717e-14"	"1"	"8.82054617624932e-05"
"phosphoglycerate dehydrogenase, serine biosynthesis"	"AraCyc"	"7"	"9.2546965330717e-14"	"1"	"8.82054617624932e-05"
"serine biosynthesis"	"AraCyc"	"7"	"1.29214167369131e-08"	"1"	"0.00179734778886573"
"valine degradation I"	"AraCyc"	"7"	"0.000277760614792538"	"1"	"0.0408690427065584"
"valine degradation II"	"AraCyc"	"7"	"1.76959436771766e-06"	"1"	"0.0109622630077902"
"Ascorbate and aldarate metabolism"	"KEGG"	"7"	"0.000132639553520111"	"1"	"0.0253758235574957"
"Fluorene degradation"	"KEGG"	"7"	"3.92868577681608e-06"	"1"	"0.00945817228140386"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"7"	"1.16006669789716e-05"	"1"	"0.0120970372344674"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"
"MUTANT DATA SET"	"quantDE"	"3.586814"	"maxDE"	"10.985422412"	"MUTANT DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"97"	"1.89533337777755e-41"	"14"	"3.36992962322457e-07"
"Shikimate pathway"	"LitPath"	"78"	"1.71090894015229e-42"	"10"	"1.77366777625071e-07"
"tryptophan biosynthesis"	"TAIR-GO"	"74"	"1.62341297140171e-99"	"9"	"1.43749389756051e-14"
"Trp biosyntesis"	"LitPath"	"74"	"7.85949336675324e-69"	"9"	"8.96551721486674e-11"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"72"	"4.51520466814991e-55"	"9"	"4.21611462684399e-08"
"tryptophan biosynthesis"	"AraCyc"	"64"	"3.15706741827476e-83"	"8"	"6.39630483823575e-12"
"response to pathogenic bacteria"	"TAIR-GO"	"44"	"0"	"6"	"0"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"42"	"6.38571002447414e-28"	"5"	"0.000207255271419051"
"Phenylpropanoid pathway"	"LitPath"	"30"	"0.0106112568716546"	"5"	"0.123603404569394"
"lignin biosynthesis"	"AraCyc"	"28"	"4.44443236767939e-18"	"4"	"0.000155047577021346"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"26"	"3.44441235898352e-15"	"3"	"0.00229952546393896"
"core phenylpropanoid metabolism"	"BioPath"	"22"	"3.19925411957369e-08"	"3"	"0.0101120836499152"
"Propanoate metabolism"	"KEGG"	"16"	"4.67495819771612e-09"	"2"	"0.0227695127450630"
"Benzoate degradation via CoA ligation"	"KEGG"	"15"	"0.000715671686725209"	"4"	"0.0350175816093960"
"Inositol phosphate metabolism"	"KEGG"	"15"	"0.00197242688503548"	"4"	"0.0479453686618595"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"15"	"0.000150705422345515"	"4"	"0.0257058470696875"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"15"	"0.000594740865095693"	"4"	"0.051567648053742"
"toxin catabolism"	"TAIR-GO"	"14"	"1.73304582762045e-08"	"7"	"5.94396320154181e-07"
"C-compound and carbohydrate utilization "	"FunCat"	"12"	"4.80921623011391e-25"	"3"	"0"
"Alanine and aspartate metabolism"	"KEGG"	"12"	"2.21557008724758e-05"	"2"	"0.0248435086093637"
"beta-Alanine metabolism"	"KEGG"	"12"	"2.12803463468837e-07"	"2"	"0.00740459235153365"
"Butanoate metabolism"	"KEGG"	"12"	"2.15411773624689e-06"	"2"	"0.0138792801666993"
"Glutamate metabolism"	"KEGG"	"12"	"0.00205028194181178"	"2"	"0.0573028956656393"
"Taurine and hypotaurine metabolism"	"KEGG"	"12"	"4.7899867945428e-15"	"2"	"8.11534361787657e-05"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"12"	"0.00436848251842138"	"4"	"0.197174665623224"
"Nucleotide sugars metabolism"	"KEGG"	"11"	"7.2554904938764e-08"	"3"	"0.000506876337013515"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"0.0264469497397031"	"1"	"0.131389459078632"
"anthranilate synthase complex"	"TAIR-GO"	"10"	"6.68394213158366e-15"	"1"	"0.000308978071904131"
"ethylene biosynthesis"	"TAIR-GO"	"10"	"2.74677244400957e-09"	"1"	"0.00808656768096444"
"gibberellic acid catabolism"	"TAIR-GO"	"10"	"4.53363958430263e-10"	"1"	"0.00298705811969309"
"lignin biosynthesis"	"TAIR-GO"	"10"	"3.45307451905132e-07"	"1"	"0.0102811097748690"
"methionine biosynthesis"	"TAIR-GO"	"10"	"1.85900846576802e-11"	"1"	"0.00181252687021739"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"5.51556745961887e-07"	"1"	"0.0213015066401298"
"response to wounding"	"TAIR-GO"	"10"	"0.000316351285048492"	"1"	"0.0570881764112636"
"biosynthesis of proto- and siroheme"	"AraCyc"	"10"	"0.000213794162887172"	"1"	"0.0863035101128617"
"chlorophyll biosynthesis"	"AraCyc"	"10"	"0.00178998942240717"	"1"	"0.128605000153533"
"flavonoid biosynthesis"	"AraCyc"	"10"	"1.83228004912645e-06"	"1"	"0.0410404267767328"
"methionine biosynthesis II"	"AraCyc"	"10"	"2.16223932666061e-08"	"1"	"0.0101447106122569"
"energy"	"FunCat"	"10"	"9.07804377946625e-18"	"2"	"3.21880075975846e-06"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"2"	"0"
"metabolism of the cysteine - aromatic group"	"FunCat"	"10"	"1.62387119617506e-09"	"1"	"0.00927887066628606"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"1.11622077253253e-05"	"1"	"0.0240865331576214"
"Methionine metabolism"	"KEGG"	"10"	"2.39734765609829e-05"	"1"	"0.062404680741623"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"0.00107432686251833"	"1"	"0.105249096306544"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"10"	"0.00685281529706625"	"1"	"0.123547932950176"
"giberelin catabolism"	"LitPath"	"10"	"5.6623723953396e-10"	"1"	"0.0018898171438998"
"arabinose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"2.85478803806707e-05"	"1"	"0.0395231210017951"
"N-terminal protein myristoylation"	"TAIR-GO"	"9"	"2.59744486132342e-06"	"1"	"0.0153595552091379"
"IAA conjugate biosynthesis II"	"AraCyc"	"9"	"0"	"1"	"0"
"Galactose metabolism"	"KEGG"	"9"	"0.00202825475813615"	"1"	"0.132426313533203"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"8"	"0.000170484715682625"	"2"	"0.00522645439625881"
"triacylglycerol degradation"	"AraCyc"	"8"	"8.39587672008683e-05"	"4"	"0.000377813239509733"
"biogenesis of chloroplast"	"FunCat"	"8"	"0.0324287147067613"	"2"	"0.0629964647025994"
"chloroplast transport "	"FunCat"	"8"	"1.25808380993660e-08"	"2"	"0.000358526847737535"
"protein targeting, sorting and translocation"	"FunCat"	"8"	"2.47066797207241e-09"	"2"	"0.000253650173188956"
"transport "	"FunCat"	"8"	"1.17033311384677e-13"	"2"	"3.21880075975846e-06"
"transport routes "	"FunCat"	"8"	"6.29527154826848e-07"	"2"	"0.00223968682173514"
"Methane metabolism"	"KEGG"	"8"	"0.0157554142972624"	"3"	"0.0838620167070836"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"8"	"0.000862753250915334"	"3"	"0.0434921505724149"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"response to auxin stimulus"	"TAIR-GO"	"7"	"1.17854313084480e-05"	"1"	"0.0102811097748690"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"Ascorbate and aldarate metabolism"	"KEGG"	"7"	"0.0111034853833414"	"1"	"0.0923178004244044"
"Fluorene degradation"	"KEGG"	"7"	"0.000545682182465977"	"1"	"0.0368288015625701"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"7"	"0.00141794878293881"	"1"	"0.0464617249444596"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"