"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"sterol biosynthesis"	"BioPath"	"24"	"6"	""	""
"sterol biosynthesis"	"BioPath"	"24"	"6"	""	""
"sterol biosynthesis"	"BioPath"	"24"	"6"	""	""
"ORGAN DATA SET"	"quantDE"	"2.394143"	"maxDE"	"3.7448252"	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	"2.600821"	"maxDE"	"5.573706"	"STRESS DATA SET"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"8"	"1.6294477796818e-10"	"2"	"5.0286564404714e-05"
"sterol biosynthesis"	"BioPath"	"8"	"1.12726098869618e-13"	"2"	"3.32750059335646e-06"
"sterol biosynthesis"	"TAIR-GO"	"8"	"0"	"2"	"0"
"sterol biosynthesis"	"AraCyc"	"8"	"0"	"2"	"0"
"Biosynthesis of steroids"	"KEGG"	"8"	"2.20806486021626e-12"	"2"	"6.12842711970263e-06"
"Terpenoid biosynthesis"	"KEGG"	"8"	"6.27696600391514e-16"	"2"	"6.24625414732859e-07"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"8"	"0"	"2"	"0"
"HORMONE DATA SET"	"quantDE"	"2.064599"	"maxDE"	"3.9228201"	"HORMONE DATA SET"
"Photosystems "	"BioPath"	"44"	"6.95123668529262e-13"	"6"	"0.00197260495242552"
"photosynthesis"	"FunCat"	"40"	"9.51419671669801e-29"	"6"	"1.07295362248474e-06"
"C-compound and carbohydrate metabolism"	"FunCat"	"34"	"0.000837162633740414"	"6"	"0.0527431810738682"
"photorespiration"	"AraCyc"	"29"	"3.88670638887673e-18"	"6"	"3.07019470139546e-05"
"Carbon fixation"	"KEGG"	"28"	"5.53862821392848e-16"	"4"	"0.000465476461205825"
"glycine biosynthesis I"	"AraCyc"	"23"	"2.69476683134227e-11"	"5"	"0.00106228747472418"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"23"	"9.6156400637849e-18"	"5"	"2.09210476169274e-05"
"glycolysis and gluconeogenesis"	"FunCat"	"23"	"3.38033232051425e-05"	"3"	"0.0657595549922582"
"Photosynthesis"	"KEGG"	"23"	"5.59479555307504e-18"	"4"	"1.70178007496124e-05"
"biogenesis of chloroplast"	"FunCat"	"19"	"4.19268791499314e-06"	"3"	"0.00783691599621519"
"formaldehyde assimilation I (serine pathway)"	"AraCyc"	"18"	"4.97666788098722e-07"	"3"	"0.0124354631013758"
"serine-isocitrate lyase pathway"	"AraCyc"	"18"	"0.000149408875393189"	"3"	"0.0351550290033019"
"starch metabolism"	"BioPath"	"16"	"8.52919696307954e-08"	"2"	"0.014292818754881"
"gluconeogenesis"	"AraCyc"	"16"	"0.000863586964992104"	"2"	"0.128351173282959"
"starch biosynthesis"	"AraCyc"	"16"	"0"	"2"	"0"
"Starch and sucrose metabolism"	"KEGG"	"16"	"1.74487171941818e-05"	"2"	"0.0407752733493531"
"additional photosystem II components"	"BioPath"	"15"	"0.000102711211399355"	"2"	"0.0288713073529739"
"Photosystem I"	"BioPath"	"15"	"0.00184825513077300"	"2"	"0.0745830294567698"
"Photosystem II"	"BioPath"	"15"	"7.28386062309508e-05"	"2"	"0.0288713073529739"
"photorespiration"	"TAIR-GO"	"15"	"1.89363758338274e-18"	"2"	"8.84993657269714e-05"
"colanic acid building blocks biosynthesis"	"AraCyc"	"15"	"0.00346885815302131"	"4"	"0.0187791914433026"
"galactose degradation I"	"AraCyc"	"15"	"1.69069772108856e-17"	"4"	"3.05006729678312e-07"
"glucose conversion"	"AraCyc"	"15"	"4.11080609434503e-05"	"4"	"0.00459279946707526"
"lactose degradation IV"	"AraCyc"	"15"	"1.69069772108856e-17"	"4"	"3.05006729678312e-07"
"UDP-glucose conversion"	"AraCyc"	"15"	"2.99886550524772e-05"	"4"	"0.00410816305883709"
"photosystem I"	"TAIR-GO"	"14"	"3.47784476373729e-14"	"2"	"0.000300585578041335"
"acetate fermentation"	"AraCyc"	"14"	"0.0336916525522541"	"2"	"0.29289373348511"
"fructose degradation (anaerobic)"	"AraCyc"	"14"	"0.0214493245209793"	"2"	"0.254820054236277"
"glycolysis IV"	"AraCyc"	"14"	"0.0227610979921271"	"2"	"0.262383411043621"
"sorbitol fermentation"	"AraCyc"	"14"	"0.0355202075220952"	"2"	"0.277594518734981"
"transport "	"FunCat"	"14"	"6.17920933980457e-25"	"2"	"2.11609103293403e-06"
"Glycolysis / Gluconeogenesis"	"KEGG"	"14"	"0.000147278373100342"	"2"	"0.0435583656820418"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"13"	"0.00113728890447230"	"3"	"0.0303667912763157"
"Glycine, serine and threonine metabolism"	"KEGG"	"12"	"1.00144194731542e-06"	"2"	"0.00567485634164446"
"Regulatory enzymes"	"BioPath"	"10"	"4.68277246623334e-12"	"1"	"0.000873522837131736"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"10"	"6.83389403885585e-08"	"1"	"0.00584911968072035"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"1.30724636488433e-11"	"1"	"0.00132308827671920"
"cytochrome b6f complex"	"TAIR-GO"	"10"	"8.15745252442922e-10"	"1"	"0.00634992249845966"
"cytochrome b6f complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"gibberellic acid catabolism"	"TAIR-GO"	"10"	"3.01892797507736e-09"	"1"	"0.00429140183192190"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"10"	"1.38659897825898e-06"	"1"	"0.0489209139607065"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"10"	"0.000562232654890454"	"1"	"0.132884022790872"
"peptidoglycan biosynthesis"	"AraCyc"	"10"	"5.88767284003209e-09"	"1"	"0.0192203360181414"
"sucrose biosynthesis"	"AraCyc"	"10"	"0.000710778135314464"	"1"	"0.105202673667846"
"sucrose degradation III"	"AraCyc"	"10"	"5.16019865062141e-05"	"1"	"0.0713303847775671"
"trehalose biosynthesis III"	"AraCyc"	"10"	"0.00540703598742135"	"1"	"0.222890016682512"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"10"	"1.74240408368246e-07"	"1"	"0.0146796569597450"
"C-compound, carbohydrate anabolism"	"FunCat"	"10"	"1.23606308051312e-07"	"1"	"0.0250780183731976"
"electron transport and membrane-associated energy conservation "	"FunCat"	"10"	"1.18639627608560e-10"	"1"	"0.005736729754722"
"energy"	"FunCat"	"10"	"4.20696560836102e-16"	"1"	"0.000502653008438483"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"2.33605961186984e-07"	"1"	"0.00636683967305867"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"3.46074931115709e-05"	"2"	"0.00247820683977176"
"Gibberellin metabolism"	"LitPath"	"10"	"4.63618382042267e-07"	"1"	"0.0151330908699267"
"giberelin catabolism"	"LitPath"	"10"	"5.41773774629817e-17"	"1"	"0.000121643402365964"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"starch biosynthesis"	"TAIR-GO"	"9"	"1.22199515208059e-06"	"1"	"0.008769657266627"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine biosynthesis II"	"AraCyc"	"9"	"0.0030602219222972"	"1"	"0.152155077930222"
"alanine degradation III"	"AraCyc"	"9"	"6.47550561965519e-11"	"1"	"0.00225614354004389"
"Alanine and aspartate metabolism"	"KEGG"	"9"	"6.54996040032946e-05"	"1"	"0.0396821212648842"
"Glutamate metabolism"	"KEGG"	"9"	"0.00251759749472234"	"1"	"0.0713774554830094"
"Carotenoid biosynthesis"	"BioPath"	"8"	"8.51123654072665e-05"	"1"	"0.0146568459749676"
"Chlorophyll a/b binding proteins"	"BioPath"	"8"	"0.00309690194089711"	"1"	"0.0417405699995423"
"Early light-inducible proteins"	"BioPath"	"8"	"4.21876232309711e-07"	"1"	"0.00584911968072035"
"light harvesting complex"	"BioPath"	"8"	"2.92145850416495e-07"	"1"	"0.00422449392687515"
"abscisic acid biosynthesis"	"TAIR-GO"	"8"	"1.88018942992656e-05"	"1"	"0.0180419647621884"
"chlorophyll binding"	"TAIR-GO"	"8"	"0.000375897322634987"	"1"	"0.0300295698558134"
"nonphotochemical quenching"	"TAIR-GO"	"8"	"3.30658546500008e-11"	"1"	"0.000447109445225977"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"8"	"8.07784710774948e-12"	"1"	"0.000447109445225977"
"response to high light intensity"	"TAIR-GO"	"8"	"1.82884453238113e-09"	"1"	"0.00132308827671920"
"response to osmotic stress"	"TAIR-GO"	"8"	"1.82884453238113e-09"	"1"	"0.00261024084544393"
"response to water deprivation"	"TAIR-GO"	"8"	"0"	"1"	"0"
"sugar mediated signaling"	"TAIR-GO"	"8"	"1.56506049031842e-06"	"1"	"0.00634992249845966"
"xanthophyll biosynthesis "	"TAIR-GO"	"8"	"0"	"1"	"0"
"carotenoid biosynthesis"	"AraCyc"	"8"	"0.00247160132152799"	"1"	"0.0297907167434929"
"cysteine biosynthesis II"	"AraCyc"	"8"	"0.000920087604555114"	"3"	"0.00332973246290742"
"serine biosynthesis"	"AraCyc"	"8"	"1.27965820124480e-06"	"3"	"1.85714912520160e-05"
"xanthophyll cycle"	"AraCyc"	"8"	"1.09884337384179e-09"	"1"	"0.000765994799516388"
"carotenid biosynthesis"	"LitPath"	"8"	"1.59496910425296e-06"	"1"	"0.00634242799463703"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"8"	"8.98947336049564e-05"	"1"	"0.0228168036947408"
"proton gradient regulation"	"BioPath"	"7"	"0"	"1"	"0"
"electron transport"	"TAIR-GO"	"7"	"0.00833310577658024"	"1"	"0.0665888324358329"
"photosynthetic electron transport"	"TAIR-GO"	"7"	"2.93859482303868e-06"	"1"	"0.00634992249845966"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"7"	"3.05968911503707e-08"	"1"	"0.00132308827671920"
"photosystem II"	"TAIR-GO"	"7"	"6.98071499547161e-07"	"1"	"0.00429140183192190"
"photosystem II assembly"	"TAIR-GO"	"7"	"6.20048008794482e-09"	"1"	"0.00132308827671920"
"photosystem II stabilization"	"TAIR-GO"	"7"	"7.97907072549985e-10"	"1"	"0.000447109445225977"
"MUTANT DATA SET"	"quantDE"	"2.261741"	"maxDE"	"6.217318465"	"MUTANT DATA SET"
"gibberellic acid biosynthesis"	"TAIR-GO"	"10"	"8.98559173660459e-15"	"1"	"0.00100637567966791"
"gibberellic acid mediated signaling"	"TAIR-GO"	"10"	"2.64207977854648e-18"	"1"	"0.000185613139448920"
"gibberellin biosynthesis"	"AraCyc"	"10"	"5.81594514514712e-19"	"1"	"0.000367695690505532"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"10"	"4.45236510544298e-12"	"1"	"0.00390976856129953"
"plant / fungal specific systemic sensing and response "	"FunCat"	"10"	"2.14022983149554e-11"	"1"	"0.00627010520555157"
"plant hormonal regulation"	"FunCat"	"10"	"2.14022983149554e-11"	"1"	"0.00627010520555157"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"6.38528481948004e-15"	"1"	"0.00066683761635743"
"diterpene biosynthesis"	"LitPath"	"10"	"2.0845228384262e-20"	"1"	"4.34440722735586e-05"
"Gibberellin metabolism"	"LitPath"	"10"	"3.27343938845044e-10"	"1"	"0.00565062014686828"