Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B14 / CYP71B12 / CYP71B13 / expressed protein (At5g25180 / At5g25130 / At5g25140 / At5g25170) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







secondary metabolism TAIR-GO 48 7




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B14 / CYP71B12 / CYP71B13 / expressed protein (At5g25180 / At5g25130 / At5g25140 / At5g25170)







max. difference between log2-ratios: 6.9











max. difference between log2-ratios excluding lowest and highest 5%: 4.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Miscellaneous acyl lipid metabolism AcylLipid 39 0.000 8 0.243


C-compound and carbohydrate metabolism FunCat 37 0.000 10 0.002

Synthesis and storage of oil AcylLipid 28 0.000 8 0.000

glycolysis and gluconeogenesis FunCat 24 0.000 5 0.009

Phenylpropanoid pathway LitPath 20 0.000 4 0.000

acyl-CoA binding TAIR-GO 19 0.000 2 0.000

lipid transport TAIR-GO 19 0.000 2 0.000

TCA cycle variation VII AraCyc 18 0.000 3 0.018

Pyruvate metabolism KEGG 18 0.000 3 0.010

Intermediary Carbon Metabolism BioPath 16 0.000 3 0.072

glyoxylate cycle AraCyc 16 0.000 2 0.004

TCA cycle variation VIII AraCyc 16 0.000 2 0.033

Glyoxylate and dicarboxylate metabolism KEGG 16 0.000 2 0.004

Phenylpropanoid Metabolism BioPath 15 0.004 3 0.093










core phenylpropanoid metabolism BioPath 14 0.000 2 0.010










lipid, fatty acid and isoprenoid metabolism FunCat 14 0.000 2 0.026










Leaf Glycerolipid Biosynthesis in Plastid BioPath 12 0.000 2 0.019










lignin biosynthesis AraCyc 12 0.000 2 0.025










Branched-chain amino acids from aspartate BioPath 10 0.000 1 0.026










lignin biosynthesis TAIR-GO 10 0.000 1 0.003










sorbitol fermentation AraCyc 10 0.001 3 0.015










threonine biosynthesis from homoserine AraCyc 10 0.000 1 0.002










glyoxylate cycle FunCat 10 0.000 1 0.001










Glycine, serine and threonine metabolism KEGG 10 0.000 1 0.067










Vitamin B6 metabolism KEGG 10 0.000 1 0.003










abscisic acid biosynthesis TAIR-GO 9 0.000 1 0.004










auxin biosynthesis TAIR-GO 9 0.000 1 0.001










auxin mediated signaling pathway TAIR-GO 9 0.000 1 0.000










molybdenum incorporation into molybdenum-molybdopterin complex TAIR-GO 9 0.000 1 0.000










response to stress TAIR-GO 9 0.000 1 0.001










sugar mediated signaling TAIR-GO 9 0.000 1 0.001










IAA biosynthesis AraCyc 9 0.000 1 0.012










degradation FunCat 9 0.000 2 0.007










protein degradation FunCat 9 0.000 2 0.003










mixed acid fermentation AraCyc 8 0.000 2 0.014










TCA cycle -- aerobic respiration AraCyc 8 0.002 2 0.030










Carbon fixation KEGG 8 0.002 2 0.041










Citrate cycle (TCA cycle) KEGG 8 0.000 2 0.012










Transcription KEGG 8 0.001 2 0.062










secondary metabolism TAIR-GO 7 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71B14 / CYP71B12 / CYP71B13 / expressed protein (At5g25180 / At5g25130 / At5g25140 / At5g25170)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 10 0.000 1 0.002
terpenoid metabolism LitPath 10 0.000 1 0.002























Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP71B14 / CYP71B12 / CYP71B13 / expressed protein (At5g25180 / At5g25130 / At5g25140 / At5g25170)







max. difference between log2-ratios: 4.6











max. difference between log2-ratios excluding lowest and highest 5%: 0.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Synthesis and storage of oil AcylLipid 26 0.000 7 0.000






gibberellin biosynthesis AraCyc 22 0.000 3 0.000





secondary metabolism FunCat 22 0.000 3 0.005





Gibberellin metabolism LitPath 22 0.000 3 0.000





giberelin biosynthesis LitPath 22 0.000 3 0.000





gibberellic acid biosynthesis TAIR-GO 20 0.000 2 0.000





C-compound and carbohydrate metabolism FunCat 20 0.035 4 0.183





Diterpenoid biosynthesis KEGG 20 0.000 2 0.000





Biosynthesis of Amino Acids and Derivatives BioPath 18 0.000 5 0.001





Glutathione metabolism BioPath 16 0.000 4 0.000





glycolysis and gluconeogenesis FunCat 16 0.000 3 0.044





toxin catabolism TAIR-GO 14 0.000 3 0.001





Pyruvate metabolism KEGG 14 0.000 2 0.024





Glutathione metabolism KEGG 12 0.000 2 0.006










Glycine, serine and threonine metabolism KEGG 11 0.000 2 0.004










Intermediary Carbon Metabolism BioPath 10 0.006 1 0.289










acyl-CoA binding TAIR-GO 10 0.000 1 0.000










glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.002










lipid transport TAIR-GO 10 0.000 1 0.002










glucosinolate biosynthesis from homomethionine AraCyc 10 0.000 1 0.001










biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.058










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.058










plant / fungal specific systemic sensing and response FunCat 10 0.000 1 0.020










plant hormonal regulation FunCat 10 0.000 1 0.020










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 10 0.029 1 0.327










Butanoate metabolism KEGG 10 0.000 1 0.020










Glycolysis / Gluconeogenesis KEGG 10 0.000 1 0.145










Valine, leucine and isoleucine biosynthesis KEGG 10 0.000 1 0.029










Glucosinolate Metabolism LitPath 10 0.000 1 0.029










photorespiration TAIR-GO 9 0.000 1 0.001










glycine biosynthesis I AraCyc 9 0.000 1 0.057










photorespiration AraCyc 9 0.000 1 0.037










superpathway of serine and glycine biosynthesis II AraCyc 9 0.000 1 0.016










ascorbic acid biosynthesis BioPath 8 0.000 1 0.008










phenylalanine degradation I AraCyc 8 0.000 2 0.002










tyrosine degradation AraCyc 8 0.000 2 0.000










Tyrosine metabolism KEGG 8 0.000 2 0.005





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP71B14 / CYP71B12 / CYP71B13 / expressed protein (At5g25180 / At5g25130 / At5g25140 / At5g25170)







max. difference between log2-ratios: 7.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Ribosome KEGG 30 0.000 6 0.007



Synthesis and storage of oil AcylLipid 20 0.000 6 0.000


Biosynthesis of Amino Acids and Derivatives BioPath 14 0.000 2 0.171


protein synthesis FunCat 14 0.027 3 0.131


secondary metabolism FunCat 12 0.000 2 0.067


Folding, Sorting and Degradation KEGG 12 0.000 5 0.000


transport FunCat 11 0.000 2 0.000


Intermediary Carbon Metabolism BioPath 10 0.005 2 0.152


Lysin from aspartate BioPath 10 0.000 1 0.001


acyl-CoA binding TAIR-GO 10 0.000 1 0.000


gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.006


lipid transport TAIR-GO 10 0.000 1 0.002


gibberellin biosynthesis AraCyc 10 0.000 1 0.012


lysine biosynthesis I AraCyc 10 0.000 1 0.023










non-oxidative branch of the pentose phosphate pathway AraCyc 10 0.000 2 0.001










oxidative branch of the pentose phosphate pathway AraCyc 10 0.000 2 0.001










biosynthesis of lysine FunCat 10 0.000 1 0.002










metabolism of the aspartate family FunCat 10 0.000 1 0.006










pentose-phosphate pathway FunCat 10 0.000 2 0.004










plant / fungal specific systemic sensing and response FunCat 10 0.000 1 0.035










plant hormonal regulation FunCat 10 0.000 1 0.035










Diterpenoid biosynthesis KEGG 10 0.000 1 0.005










Lysine biosynthesis KEGG 10 0.000 1 0.005










Proteasome KEGG 10 0.000 4 0.000










Gibberellin metabolism LitPath 10 0.000 1 0.024










giberelin biosynthesis LitPath 10 0.000 1 0.014










mono-/sesqui-/di-terpene biosynthesis LitPath 10 0.000 1 0.072










sequiterpene biosynthesis LitPath 10 0.000 1 0.000










terpenoid metabolism LitPath 10 0.000 1 0.076










abscisic acid biosynthesis TAIR-GO 9 0.000 1 0.005










auxin mediated signaling pathway TAIR-GO 9 0.000 1 0.000










DNA-directed RNA polymerase II, core complex TAIR-GO 9 0.000 1 0.000










molybdenum incorporation into molybdenum-molybdopterin complex TAIR-GO 9 0.000 1 0.000










response to stress TAIR-GO 9 0.000 1 0.001










sugar mediated signaling TAIR-GO 9 0.000 1 0.002










transcription from RNA polymerase II promoter TAIR-GO 9 0.000 1 0.000










RNA polymerase KEGG 9 0.000 1 0.052










Transcription KEGG 9 0.000 1 0.158










metabolism of acyl-lipids in mitochondria AcylLipid 9 0.003 2 0.036










sorbitol fermentation AraCyc 8 0.001 3 0.013










storage protein FunCat 8 0.000 2 0.000










male gamete generation (sensu Magnoliophyta) TAIR-GO 7 0.000 1 0.000










secondary metabolism TAIR-GO 7 0.000 1 0.000










degradation FunCat 7 0.000 1 0.062










protein degradation FunCat 7 0.000 1 0.035










transport ATPases FunCat 7 0.002 1 0.089










transport facilitation FunCat 7 0.000 1 0.001










Oxidative phosphorylation KEGG 7 0.001 1 0.146



























page created by Vincent Sauveplane 05/11/06