"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "tryptophan biosynthesis" "TAIR-GO" "470" "61" "" "" "Phenylpropanoid Metabolism" "BioPath" "404" "62" "" "" "Shikimate pathway" "LitPath" "294" "39" "" "" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "288" "38" "" "" "Trp biosyntesis" "LitPath" "254" "32" "" "" "Glutathione metabolism" "KEGG" "210" "32" "" "" "Glutathione metabolism" "BioPath" "208" "31" "" "" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "182" "27" "" "" "response to pathogenic bacteria" "TAIR-GO" "176" "25" "" "" "toxin catabolism" "TAIR-GO" "114" "33" "" "" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "84" "19" "" "" "lipid, fatty acid and isoprenoid degradation" "FunCat" "70" "10" "" "" "Phenylalanine metabolism" "KEGG" "66" "16" "" "" "metabolism of the cysteine - aromatic group" "FunCat" "50" "5" "" "" "camalexin biosynthesis" "AraCyc" "49" "7" "" "" "camalexin biosynthesis" "LitPath" "49" "7" "" "" "Fluorene degradation" "KEGG" "38" "5" "" "" "gamma-Hexachlorocyclohexane degradation" "KEGG" "38" "5" "" "" "ascorbic acid biosynthesis" "BioPath" "36" "9" "" "" "indole phytoalexin biosynthesis" "TAIR-GO" "28" "4" "" "" "ORGAN DATA SET" "quantDE" "5.496465" "maxDE" "7.2040883" "ORGAN DATA SET" "toxin catabolism" "TAIR-GO" "18" "3.08391631733089e-19" "5" "4.42656070599224e-07" "triacylglycerol degradation" "AraCyc" "17" "4.48786707058881e-21" "2" "0.00462799146584213" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "15" "3.97761434274724e-09" "5" "0.000580662172837979" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "14" "0.000191469781291841" "3" "0.0185329446318095" "lipases pathway" "AraCyc" "14" "9.0807961552828e-16" "2" "0.00057715492662516" "amino acid metabolism" "FunCat" "14" "9.82536332026423e-07" "2" "0.0143575946771296" "lipid, fatty acid and isoprenoid degradation" "FunCat" "14" "8.12629923307647e-17" "2" "0.000301562564709992" "Glutathione metabolism" "KEGG" "14" "2.07431753321233e-10" "3" "0.000973698514461003" "Glycerophospholipid metabolism" "KEGG" "14" "1.3626425186886e-13" "2" "0.00178002918411937" "Lipid signaling" "AcylLipid" "14" "0.000142196685871318" "2" "0.0499101663881048" "Cell Wall Carbohydrate Metabolism" "BioPath" "12" "0.0392598013461259" "3" "0.156739617550798" "Glutathione metabolism" "BioPath" "12" "1.77331624481274e-07" "2" "0.00882619345612651" "Phenylpropanoid Metabolism" "BioPath" "12" "0.00132917769519443" "2" "0.0932239465013872" "Miscellaneous acyl lipid metabolism" "AcylLipid" "12" "0.00086818567505369" "2" "0.0614969029641329" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "10" "8.09899051292075e-07" "1" "0.0470710714703541" "aging" "TAIR-GO" "10" "7.03759419273547e-13" "1" "0.00148669311103283" "defense response" "TAIR-GO" "10" "3.63028146431788e-08" "1" "0.00956712193174576" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "10" "5.38040687394537e-15" "1" "0.000538059275367787" "response to pathogenic bacteria" "TAIR-GO" "10" "5.38040687394537e-15" "1" "0.000538059275367787" "response to stress" "TAIR-GO" "10" "3.92527660797855e-15" "1" "0.000324268175085587" "tryptophan biosynthesis" "TAIR-GO" "10" "4.52755230252313e-09" "1" "0.00693937937124742" "metabolism of the cysteine - aromatic group" "FunCat" "10" "2.06912049564616e-13" "1" "0.00108628605134688" "Shikimate pathway" "LitPath" "10" "3.25301931862117e-07" "1" "0.0188414241313220" "Trp biosyntesis" "LitPath" "10" "9.07846868185145e-11" "1" "0.00344112183428118" "disease, virulence and defense " "FunCat" "9" "5.8461143463936e-15" "2" "4.87106704037936e-05" "ascorbic acid biosynthesis" "BioPath" "8" "1.79582384418213e-08" "2" "0.000271160366878425" "intracellular signalling" "FunCat" "8" "8.14066544020163e-07" "3" "0.000135172349991270" "Benzoate degradation via CoA ligation" "KEGG" "8" "0.00101662682525768" "3" "0.0147353786693415" "Inositol phosphate metabolism" "KEGG" "8" "0.00199368667175976" "3" "0.0196548616239489" "Methane metabolism" "KEGG" "8" "2.40450655615317e-05" "4" "0.00160200018429226" "Nicotinate and nicotinamide metabolism" "KEGG" "8" "0.000371861409444040" "3" "0.0111443441086954" "Phenylalanine metabolism" "KEGG" "8" "0.000270026760129841" "4" "0.00220278246211514" "Prostaglandin and leukotriene metabolism" "KEGG" "8" "6.36604747725305e-07" "4" "0.000586481904248737" "indole phytoalexin biosynthesis" "TAIR-GO" "7" "0" "1" "0" "response to osmotic stress" "TAIR-GO" "7" "1.16444102593015e-11" "1" "0.000324268175085587" "systemic acquired resistance" "TAIR-GO" "7" "1.42671163405313e-09" "1" "0.00111996519178543" "systemic acquired resistance, salicylic acid mediated signaling pathway" "TAIR-GO" "7" "1.91682428875657e-13" "1" "0.000162853697136140" "camalexin biosynthesis" "AraCyc" "7" "0" "1" "0" "fatty acid biosynthesis -- initial steps" "AraCyc" "7" "2.57285720866798e-06" "1" "0.0179396044208736" "resistance proteins " "FunCat" "7" "0" "1" "0" "Ascorbate and aldarate metabolism" "KEGG" "7" "2.80295787717278e-05" "1" "0.0291422193812036" "Fluorene degradation" "KEGG" "7" "7.51118848278656e-07" "1" "0.0109168442927782" "gamma-Hexachlorocyclohexane degradation" "KEGG" "7" "2.27436434915163e-06" "1" "0.0139485362861263" "camalexin biosynthesis" "LitPath" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "5.490809" "maxDE" "9.752428" "STRESS DATA SET" "Phenylpropanoid Metabolism" "BioPath" "154" "2.92595188762271e-46" "24" "1.35802197843628e-08" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "124" "1.52116078001409e-84" "16" "1.98286577718713e-11" "Shikimate pathway" "LitPath" "120" "3.40118530409878e-71" "16" "4.11556312232751e-11" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "102" "8.0999659279079e-61" "13" "4.94060394084403e-09" "tryptophan biosynthesis" "TAIR-GO" "88" "3.29041813251093e-84" "11" "4.18888366403116e-13" "Trp biosyntesis" "LitPath" "88" "6.87030972493999e-76" "11" "1.83536684466079e-11" "tryptophan biosynthesis" "AraCyc" "78" "2.76526289021709e-76" "10" "1.33750926654715e-10" "C-compound and carbohydrate metabolism" "FunCat" "73.5" "1.45428546601888e-08" "17" "0.000857367178961" "Intermediary Carbon Metabolism" "BioPath" "70" "7.01029166634642e-08" "17" "5.94571113255792e-05" "response to pathogenic bacteria" "TAIR-GO" "64" "0" "9" "0" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "60" "0.0138774733592565" "9" "0.152986145602238" "Gluconeogenesis from lipids in seeds" "BioPath" "55" "5.44458211636612e-15" "7" "0.0066351311539313" "Glutathione metabolism" "KEGG" "54" "9.04616589157376e-21" "9" "1.97358458661224e-05" "Glutathione metabolism" "BioPath" "48" "5.90820462306773e-10" "7" "0.00724883796891189" "toxin catabolism" "TAIR-GO" "44" "2.65948984520348e-25" "10" "4.94737710798611e-06" "amino acid metabolism" "FunCat" "44" "4.02029606948827e-07" "6" "0.0376868361949355" "Citrate cycle (TCA cycle)" "KEGG" "44" "5.02215119495329e-15" "10" "2.09098933073035e-06" "Glutamate metabolism" "KEGG" "42" "3.91225816735975e-10" "6" "0.00390040835286294" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "38" "1.48426767953993e-07" "10" "0.000213025121790080" "Carbon fixation" "KEGG" "38" "1.39033790191684e-05" "7" "0.0117241707959152" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "37" "1.57647393262819e-05" "8" "0.0466338494768658" "lipid, fatty acid and isoprenoid degradation" "FunCat" "36" "3.54691109872307e-26" "5" "0.000128173331714683" "Alanine and aspartate metabolism" "KEGG" "34" "1.15122845033073e-11" "5" "0.00305103925147504" "Miscellaneous acyl lipid metabolism" "AcylLipid" "34" "0.000116451301127554" "7" "0.038945419682251" "Fatty acid metabolism" "KEGG" "30" "5.03493264620792e-06" "3" "0.0777658445716952" "Phenylalanine metabolism" "KEGG" "30" "0.000180015960243093" "7" "0.0557408709671155" "aromatic amino acid family biosynthesis" "TAIR-GO" "28" "9.66375791131727e-14" "4" "0.00033809100220041" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "28" "2.70778916508411e-16" "4" "0.000144553044586284" "chorismate biosynthesis" "LitPath" "28" "1.25226815443264e-11" "4" "0.00177056610179420" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "27" "1.69175515915086e-10" "3" "0.0270258970663989" "glycolysis and gluconeogenesis" "FunCat" "26.5" "0.0246385756445619" "6" "0.0667825989830762" "alanine biosynthesis II" "AraCyc" "22" "1.92073876323176e-11" "5" "0.000108135072104173" "chorismate biosynthesis" "AraCyc" "22" "3.19404102781459e-20" "3" "0.000187775294488562" "Alkaloid biosynthesis I" "KEGG" "22" "1.10053816160443e-06" "3" "0.0190997374121986" "Arginine and proline metabolism" "KEGG" "22" "0.00132935889630811" "3" "0.140527642588190" "Novobiocin biosynthesis" "KEGG" "22" "7.65721444218583e-12" "3" "0.00261872590472219" "Tyrosine metabolism" "KEGG" "22" "0.00150078274943381" "3" "0.123291720599526" "protein catabolism" "TAIR-GO" "20" "0.0210790336511961" "3" "0.199927162319282" "ubiquitin-dependent protein catabolism" "TAIR-GO" "20" "0.00595382305217133" "3" "0.133414895574583" "Proteasome" "KEGG" "20" "0.0467399070599499" "3" "0.238422624338451" "abscisic acid biosynthesis" "TAIR-GO" "19" "1.85026039883127e-10" "2" "0.0102838438770518" "response to stress" "TAIR-GO" "19" "2.62698116535715e-16" "2" "0.000424358553084527" "IAA biosynthesis" "AraCyc" "19" "1.39399176430745e-10" "2" "0.00585213333977485" "degradation " "FunCat" "19" "2.70313674463767e-10" "2" "0.0441307969383084" "Galactose metabolism" "KEGG" "19" "0.00186734016489150" "2" "0.184600203045401" "lignin biosynthesis" "AraCyc" "18" "0.00229155286762691" "3" "0.0521726641604772" "TCA cycle -- aerobic respiration" "AraCyc" "18" "0.000594644082026928" "4" "0.0168471157604908" "Glycine, serine and threonine metabolism" "KEGG" "18" "0.00918727642439681" "3" "0.0918395733657774" "Propanoate metabolism" "KEGG" "18" "0.000722752690813298" "3" "0.0532038629626442" "fatty acid beta oxidation complex" "BioPath" "17" "6.44967710658295e-06" "2" "0.0616083722833635" "defense response" "TAIR-GO" "17" "0.00133097138406150" "2" "0.0688933444160073" "salicylic acid biosynthesis" "TAIR-GO" "17" "0" "2" "0" "fatty acid oxidation pathway" "AraCyc" "17" "2.65302764650573e-06" "2" "0.0218601712490506" "Ascorbate and aldarate metabolism" "KEGG" "17" "0.00315502815391896" "2" "0.115734804963150" "Fluorene degradation" "KEGG" "17" "6.28150588020668e-06" "2" "0.0323761943119424" "gamma-Hexachlorocyclohexane degradation" "KEGG" "17" "4.88132659819995e-05" "2" "0.0451126435334724" "glyphosate metabolism" "TAIR-GO" "16" "0" "2" "0" "nitrogen compound metabolism" "TAIR-GO" "16" "5.80579762983079e-17" "2" "0.000109960703866430" "proteasome regulatory particle, base subcomplex (sensu Eukaryota)" "TAIR-GO" "16" "3.10019471018209e-08" "2" "0.0102838438770518" "response to wounding" "TAIR-GO" "16" "0.00800902482223133" "2" "0.0868760047930731" "asparagine biosynthesis I" "AraCyc" "16" "3.30596587692311e-12" "2" "0.00104845840784968" "asparagine degradation I" "AraCyc" "16" "1.87819882720380e-08" "2" "0.0112755222950108" "aspartate biosynthesis and degradation" "AraCyc" "16" "6.08644414785041e-14" "2" "0.000613589188261119" "aspartate degradation I" "AraCyc" "16" "0.000104192697973031" "2" "0.049837059708848" "aspartate degradation II" "AraCyc" "16" "1.15821687998667e-07" "2" "0.0135547020590489" "glutamine degradation III" "AraCyc" "16" "6.51774647888696e-12" "2" "0.00334705452736534" "phenylalanine biosynthesis II" "AraCyc" "16" "5.24720170785034e-08" "4" "0.000550890174587702" "metabolism of the aspartate family" "FunCat" "16" "8.85279663020568e-16" "2" "0.00141858970376688" "pentose-phosphate pathway " "FunCat" "16" "8.3660360409143e-08" "4" "0.000343925276299705" "Cysteine metabolism" "KEGG" "16" "0.00900845913663348" "2" "0.137490993003695" "leucine biosynthesis" "AraCyc" "14" "1.26889440433116e-08" "3" "0.00139907665084563" "lipases pathway" "AraCyc" "14" "0.000177167073297506" "2" "0.049837059708848" "serine-isocitrate lyase pathway" "AraCyc" "14" "0.0254321445632331" "3" "0.0558849115099581" "TCA cycle variation VIII" "AraCyc" "14" "0.0350866972048165" "3" "0.0721151743862436" "Glycerophospholipid metabolism" "KEGG" "14" "0.00956882099752432" "2" "0.0954367042414461" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "14" "0.00121265710868689" "3" "0.0136324430152888" "ascorbic acid biosynthesis" "BioPath" "12" "0.00492164351272748" "3" "0.0100221538745493" "oxidative branch of the pentose phosphate pathway" "AraCyc" "12" "5.70553500773066e-08" "3" "0.000592726651820694" "beta-Alanine metabolism" "KEGG" "12" "0.00913534357990759" "2" "0.0681335662465942" "Butanoate metabolism" "KEGG" "12" "0.0407126208441704" "2" "0.115734804963150" "Taurine and hypotaurine metabolism" "KEGG" "12" "3.30080591870971e-09" "2" "0.00101547723117963" "Chloroplastic protein turnover" "BioPath" "10" "6.28000359057378e-05" "1" "0.0871657003895024" "ERD1 protease (ClpC-like)" "BioPath" "10" "0" "1" "0" "Glucosyltransferases for benzoic acids" "BioPath" "10" "0.0319717596264050" "1" "0.100283852545997" "Phylloquinone biosynthesis" "BioPath" "10" "2.00130458428799e-09" "1" "0.0233218017856402" "salycilic acid biosynthesis" "BioPath" "10" "1.51990946869930e-07" "1" "0.009857637300244" "sucrose metabolism" "BioPath" "10" "0.026181059567451" "1" "0.187517643802542" "anthranilate synthase complex" "TAIR-GO" "10" "5.7458334619057e-10" "1" "0.00231863376647385" "ATP-dependent proteolysis" "TAIR-GO" "10" "3.16951406838997e-05" "1" "0.0959290463796733" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "10" "3.11712205819539e-06" "1" "0.0210635858604344" "ethylene biosynthesis" "TAIR-GO" "10" "8.0592325241677e-05" "1" "0.0536378578049713" "fatty acid biosynthesis" "TAIR-GO" "10" "0.0497390579515887" "1" "0.161905745995578" "leaf senescence" "TAIR-GO" "10" "0" "1" "0" "lignin biosynthesis" "TAIR-GO" "10" "0.00397966922693229" "1" "0.0668321173198307" "long-chain fatty acid metabolism" "TAIR-GO" "10" "0.0220638268586297" "1" "0.197332769043125" "systemic acquired resistance" "TAIR-GO" "10" "1.08550305325621e-05" "1" "0.0415162519066865" "tryptophan catabolism" "TAIR-GO" "10" "5.7458334619057e-10" "1" "0.00231863376647385" "glucosinolate biosynthesis from tryptophan" "AraCyc" "10" "4.55147230260866e-09" "1" "0.0030417160095258" "glyoxylate cycle" "AraCyc" "10" "0.0161209078394171" "2" "0.0363929852668101" "IAA biosynthesis I" "AraCyc" "10" "2.67207121932977e-05" "1" "0.032131322246749" "menaquinone biosynthesis" "AraCyc" "10" "4.55147230260866e-09" "1" "0.032131322246749" "non-phosphorylated glucose degradation" "AraCyc" "10" "0.00113731712891108" "3" "0.0185534168800525" "octane oxidation" "AraCyc" "10" "0.00088213544104965" "1" "0.0393273891765949" "salicylic acid biosynthesis" "AraCyc" "10" "3.55865417926620e-06" "1" "0.0142657433496754" "biosynthesis of phenylpropanoids" "FunCat" "10" "0.0163923688002364" "1" "0.28198532200107" "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" "10" "0.0163923688002364" "1" "0.28198532200107" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "10" "2.30173091579764e-12" "2" "2.83627661149731e-05" "degradation of lipids, fatty acids and isoprenoids" "FunCat" "10" "0" "1" "0" "glyoxylate cycle" "FunCat" "10" "2.30173091579764e-12" "2" "2.83627661149731e-05" "metabolism of the cysteine - aromatic group" "FunCat" "10" "2.78395513245272e-05" "1" "0.0359839008391958" "nitrogen and sulfur biogenesis of chloroplast" "FunCat" "10" "0" "1" "0" "stress response" "FunCat" "10" "0" "1" "0" "Biosynthesis of Polyketides and Nonribosomal Peptides" "KEGG" "10" "4.91052376934878e-05" "1" "0.0410895730054806" "Ubiquinone biosynthesis" "KEGG" "10" "1.70213689711989e-05" "1" "0.0949275090539164" "metabolism of acyl-lipids in mitochondria" "AcylLipid" "10" "0.0365809906555936" "1" "0.174864734731896" "abscisic acid biosynthesis" "LitPath" "10" "0.000936765908724525" "1" "0.104264509611650" "phylloquinone biosynthesis" "LitPath" "10" "0.00913909372723055" "1" "0.445220027296271" "phylloquinone biosynthesis, salicylic acid biosynthesis" "LitPath" "10" "0" "1" "0" "plastochinone and phylloquinone biosynthesis" "LitPath" "10" "2.13580335819562e-05" "1" "0.179121541737703" "arabinose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "auxin biosynthesis" "TAIR-GO" "9" "1.24089923074004e-06" "1" "0.0130476012302929" "auxin mediated signaling pathway" "TAIR-GO" "9" "1.70080038723326e-07" "1" "0.0067359798916887" "calcium ion binding" "TAIR-GO" "9" "6.52977251198517e-08" "1" "0.0210635858604344" "molybdenum incorporation into molybdenum-molybdopterin complex" "TAIR-GO" "9" "0" "1" "0" "response to absence of light" "TAIR-GO" "9" "1.09525933266287e-12" "1" "0.00231863376647385" "response to mechanical stimulus" "TAIR-GO" "9" "6.34539944952112e-09" "1" "0.0067359798916887" "response to temperature" "TAIR-GO" "9" "8.66344789252994e-07" "1" "0.0067359798916887" "sugar mediated signaling" "TAIR-GO" "9" "0.000280076973250093" "1" "0.0306076431479815" "thigmotropism" "TAIR-GO" "9" "2.59501364246678e-11" "1" "0.00231863376647385" "protein degradation " "FunCat" "9" "0.000179334283227436" "1" "0.114484144239983" "Nucleotide sugars metabolism" "KEGG" "9" "0.0193142702549766" "1" "0.231150844841420" "disease, virulence and defense " "FunCat" "8" "2.93782242974324e-06" "3" "0.000889785291481464" "Aminosugars metabolism" "KEGG" "8" "0.0274103776203679" "2" "0.0767855433358569" "fatty acid beta-oxidation" "TAIR-GO" "7" "0.00762679907032942" "1" "0.0306076431479815" "indole phytoalexin biosynthesis" "TAIR-GO" "7" "0" "1" "0" "camalexin biosynthesis" "AraCyc" "7" "0" "1" "0" "isoleucine degradation III" "AraCyc" "7" "0.00344453649646174" "1" "0.055311262532087" "leucine degradation II" "AraCyc" "7" "0.00344453649646174" "1" "0.055311262532087" "valine degradation II" "AraCyc" "7" "0.00285367936978140" "1" "0.102733849344412" "camalexin biosynthesis" "LitPath" "7" "0" "1" "0" "HORMONE DATA SET" "quantDE" "2.421884" "maxDE" "9.3916583" "HORMONE DATA SET" "Phenylpropanoid Metabolism" "BioPath" "135" "8.85652531830619e-50" "21" "1.53586217064977e-09" "Shikimate pathway" "LitPath" "82" "1.95405044085593e-45" "11" "6.98739644290995e-08" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "78" "2.79043498084367e-46" "11" "3.27522448231189e-08" "tryptophan biosynthesis" "TAIR-GO" "78" "2.08070189106454e-79" "10" "3.02208207615201e-12" "Trp biosyntesis" "LitPath" "78" "4.6739793602859e-74" "10" "8.93779902156638e-12" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "68" "1.07749399076414e-08" "9" "0.0235592964906908" "tryptophan biosynthesis" "AraCyc" "68" "1.68379140581268e-68" "9" "1.72596583118767e-10" "Glutathione metabolism" "BioPath" "64" "3.58648572270240e-26" "8" "0.000155000520948014" "amino acid metabolism" "FunCat" "59" "9.31379627722754e-23" "8" "0.000137391852043296" "response to pathogenic bacteria" "TAIR-GO" "54" "0" "8" "0" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "50" "6.57243272317672e-27" "7" "6.7155367291245e-06" "sulfate assimilation III" "AraCyc" "44" "1.52813421931907e-24" "6" "1.02335026961615e-05" "Phenylpropanoid pathway" "LitPath" "42" "2.84849694474159e-06" "7" "0.0340434972914328" "toxin catabolism" "TAIR-GO" "40" "1.77070753190940e-26" "12" "9.5902890330972e-09" "cysteine biosynthesis I" "AraCyc" "35" "6.3975640891012e-20" "5" "0.000300196115358722" "Glucosyltransferases for benzoic acids" "BioPath" "30" "2.09154374091556e-18" "3" "0.000425284452839189" "lignin biosynthesis" "AraCyc" "30" "8.80170571971838e-12" "5" "0.000588888006432575" "Glutathione metabolism" "KEGG" "30" "2.82775913018509e-12" "5" "0.000465019933665002" "response to wounding" "TAIR-GO" "28" "1.41020435174280e-11" "4" "0.00160054735869467" "nitrogen and sulfur metabolism" "FunCat" "28" "7.78135915905789e-20" "4" "3.01400272566617e-05" "core phenylpropanoid metabolism" "BioPath" "24" "9.90185453434756e-06" "4" "0.00992432967770174" "biosynthesis of proto- and siroheme" "AraCyc" "21" "1.42022089537407e-07" "3" "0.0166635234903246" "metabolism of the cysteine - aromatic group" "FunCat" "20" "5.86541379279957e-18" "2" "0.000777051433285707" "Nitrogen metabolism" "KEGG" "19" "4.0922704211753e-05" "2" "0.0419031507345994" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "19" "0.00260295990603297" "3" "0.221384950705094" "IAA biosynthesis" "AraCyc" "18" "1.77602206755846e-11" "2" "0.00260748997092655" "suberin biosynthesis" "AraCyc" "18" "7.83011592386229e-09" "3" "0.000770990458728978" "Alanine and aspartate metabolism" "KEGG" "18" "9.72454302913656e-07" "3" "0.00631958051968913" "Glutamate metabolism" "KEGG" "18" "0.000601360488588439" "3" "0.0198528146960447" "sulfate assimilation" "TAIR-GO" "16" "3.15944834535569e-10" "2" "0.00326375013604791" "alanine biosynthesis II" "AraCyc" "16" "2.75409682571564e-08" "3" "0.00279761118349148" "dissimilatory sulfate reduction" "AraCyc" "16" "1.26703325054729e-12" "2" "0.000453253515293409" "Alkaloid biosynthesis I" "KEGG" "16" "5.77741364891861e-07" "2" "0.0154897174426721" "Citrate cycle (TCA cycle)" "KEGG" "16" "0.000268264413797335" "3" "0.0169027539252189" "Phenylalanine metabolism" "KEGG" "16" "0.00502726849635941" "2" "0.357281778651317" "Tyrosine metabolism" "KEGG" "16" "0.000241124111764084" "2" "0.0727064409993673" "Arginine and proline metabolism" "KEGG" "15" "0.000640718083933802" "2" "0.081632858476973" "defense response" "TAIR-GO" "14" "0.00102712394476156" "2" "0.0464994797155241" "Cysteine metabolism" "KEGG" "14" "0.000130970839984489" "2" "0.0269561736069808" "Glycine, serine and threonine metabolism" "KEGG" "14" "0.000675826123173756" "2" "0.0562877503838012" "ethylene biosynthesis" "TAIR-GO" "13" "9.14202611627392e-09" "2" "0.00326375013604791" "response to mechanical stimulus" "TAIR-GO" "13" "8.44116788057145e-17" "2" "6.77805675243562e-05" "jasmonic acid biosynthesis" "TAIR-GO" "12" "0.00172755781821484" "2" "0.0407048527896175" "jasmonic acid biosynthesis" "AraCyc" "12" "5.48966941432238e-05" "2" "0.00870147137370053" "C-compound and carbohydrate utilization " "FunCat" "12" "1.17811595465548e-21" "2" "0" "lipid, fatty acid and isoprenoid degradation" "FunCat" "12" "2.40266394807101e-06" "2" "0.0149496226511680" "respiration" "FunCat" "12" "3.08626223415938e-07" "2" "0.00274737483917697" "beta-Alanine metabolism" "KEGG" "12" "3.45739474145801e-05" "2" "0.0118764024079738" "Butanoate metabolism" "KEGG" "12" "0.000270193971028569" "2" "0.0219497682738113" "Taurine and hypotaurine metabolism" "KEGG" "12" "1.83740021911612e-12" "2" "0.00013591852467057" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "12" "0.000152694316215916" "2" "0.0440824471887862" "response to absence of light" "TAIR-GO" "11" "0" "2" "0" "Cyanoamino acid metabolism" "KEGG" "11" "0.000106917467695249" "2" "0.0219497682738113" "Chloroplastic protein turnover" "BioPath" "10" "3.66595246362353e-06" "1" "0.0476636500545674" "ERD1 protease (ClpC-like)" "BioPath" "10" "0" "1" "0" "anthranilate synthase complex" "TAIR-GO" "10" "2.19159694646708e-11" "1" "0.00168250244196535" "ATP-dependent proteolysis" "TAIR-GO" "10" "1.76041713993035e-06" "1" "0.0726537334344597" "cell plate formation (sensu Magnoliophyta)" "TAIR-GO" "10" "2.19159694646708e-11" "1" "0.00168250244196535" "cellular response to sulfate starvation" "TAIR-GO" "10" "1.02038020969882e-11" "1" "0.00168250244196535" "lignin biosynthesis" "TAIR-GO" "10" "0.000342928609577564" "1" "0.0501508251088066" "phenylpropanoid biosynthesis" "TAIR-GO" "10" "1.76041713993035e-06" "1" "0.0155094498262136" "phenylpropanoid metabolism" "TAIR-GO" "10" "9.73041448789708e-06" "1" "0.0226451725003178" "response to stress" "TAIR-GO" "10" "1.14659611666557e-07" "1" "0.00956086228139353" "phenylalanine biosynthesis II" "AraCyc" "10" "8.70009854996538e-05" "2" "0.0153106445233721" "phenylpropanoid pathway, initial reactions" "AraCyc" "10" "1.48846925938990e-07" "1" "0.00556865477122277" "salicylic acid biosynthesis" "AraCyc" "10" "3.43398526621188e-07" "1" "0.00822115897299027" "aerobic respiration" "FunCat" "10" "1.30063920896535e-05" "1" "0.0336082408995607" "biosynthesis of phenylpropanoids" "FunCat" "10" "0.00087762747896049" "1" "0.142112461600779" "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" "10" "0.00087762747896049" "1" "0.142112461600779" "secondary metabolism" "FunCat" "10" "0.0144805746885899" "1" "0.329332356158581" "stress response" "FunCat" "10" "0" "1" "0" "Alkaloid biosynthesis II" "KEGG" "10" "8.63419627281924e-07" "1" "0.0149931034885457" "Porphyrin and chlorophyll metabolism" "KEGG" "10" "0.0306764588619270" "1" "0.139733334618118" "Sulfur metabolism" "KEGG" "10" "0.0112317500239368" "1" "0.0993120513297808" "Tryptophan metabolism" "KEGG" "10" "0.00455957465153717" "2" "0.0488330014345693" "metabolism of acyl-lipids in mitochondria" "AcylLipid" "10" "0.000372753033597857" "1" "0.0927162854331065" "phytochromobilin biosynthesis" "LitPath" "10" "0.000449884680302273" "1" "0.0436527497547964" "arabinose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "auxin biosynthesis" "TAIR-GO" "9" "7.39408708348179e-08" "1" "0.00956086228139353" "calcium ion binding" "TAIR-GO" "9" "3.56592551020048e-09" "1" "0.0155094498262136" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "9" "0.00854572863835177" "1" "0.168287018444091" "hyperosmotic salinity response" "TAIR-GO" "9" "0.000136110660106934" "1" "0.0610419675390736" "nucleotide metabolism" "TAIR-GO" "9" "1.17623985389217e-09" "1" "0.00491194619084734" "proline biosynthesis" "TAIR-GO" "9" "1.15542358602385e-06" "1" "0.00956086228139353" "response to temperature" "TAIR-GO" "9" "5.09847926828779e-08" "1" "0.00491194619084734" "thigmotropism" "TAIR-GO" "9" "1.25018666896201e-12" "1" "0.00168250244196535" "acrylonitrile degradation" "AraCyc" "9" "2.67293717264308e-12" "1" "0.00339486864090706" "aldoxime degradation" "AraCyc" "9" "2.67293717264308e-12" "1" "0.00339486864090706" "arginine degradation II" "AraCyc" "9" "0.00216639819725162" "1" "0.0764237515340408" "arginine degradation III" "AraCyc" "9" "4.9360364026984e-06" "1" "0.0188146809302097" "arginine degradation V" "AraCyc" "9" "9.28950455929336e-06" "1" "0.0329010049579638" "biotin biosynthesis I" "AraCyc" "9" "1.15686034640594e-06" "1" "0.0278520857934576" "glutamate degradation I" "AraCyc" "9" "9.45078390497895e-07" "1" "0.0148669470291463" "IAA biosynthesis I" "AraCyc" "9" "1.90954338880585e-05" "1" "0.0188146809302097" "lysine biosynthesis I" "AraCyc" "9" "0.000115253477595111" "1" "0.0626983072175683" "nitrogen and sulfur utilization " "FunCat" "9" "6.45670431532437e-06" "1" "0.0185087792704823" "Galactose metabolism" "KEGG" "9" "0.0420696501566115" "1" "0.174173975076841" "Nucleotide sugars metabolism" "KEGG" "9" "0.000249686023301730" "1" "0.0770179441744802" "Phosphatidylinositol signaling system" "KEGG" "9" "0.0314937851818611" "1" "0.200815428824801" "Signal Transduction" "KEGG" "9" "0.0395347254212186" "1" "0.209804503110832" "Urea cycle and metabolism of amino groups" "KEGG" "9" "0.00326633146057079" "1" "0.115053032770365" "ascorbic acid biosynthesis" "BioPath" "8" "0.0262502074480075" "2" "0.0229913793038541" "Aminosugars metabolism" "KEGG" "8" "0.000548758605828545" "2" "0.0136144072231573" "indole phytoalexin biosynthesis" "TAIR-GO" "7" "0" "1" "0" "L-serine biosynthesis" "TAIR-GO" "7" "3.53593793554051e-08" "1" "0.00168250244196535" "camalexin biosynthesis" "AraCyc" "7" "0" "1" "0" "cysteine biosynthesis II" "AraCyc" "7" "0.00221603676114648" "1" "0.106303612478636" "phosphoglycerate dehydrogenase, cysteine biosynthesis II" "AraCyc" "7" "7.3046641208481e-11" "1" "0.000584188662825275" "phosphoglycerate dehydrogenase, serine biosynthesis" "AraCyc" "7" "7.3046641208481e-11" "1" "0.000584188662825275" "serine biosynthesis" "AraCyc" "7" "7.05614716238697e-06" "1" "0.0113283211560690" "Fluorene degradation" "KEGG" "7" "0.00955920460378764" "1" "0.0503406514924899" "gamma-Hexachlorocyclohexane degradation" "KEGG" "7" "0.0214612447546541" "1" "0.0631937668005744" "camalexin biosynthesis" "LitPath" "7" "0" "1" "0" "MUTANT DATA SET" "quantDE" "3.712337" "maxDE" "8.608607" "MUTANT DATA SET" "Phenylpropanoid Metabolism" "BioPath" "103" "3.67870710871327e-36" "15" "3.69039191122057e-06" "Shikimate pathway" "LitPath" "82" "8.70548505005145e-45" "11" "1.02104899183342e-07" "tryptophan biosynthesis" "TAIR-GO" "78" "1.49327293098795e-91" "10" "1.63743307301410e-14" "Trp biosyntesis" "LitPath" "78" "2.15291838958457e-73" "10" "1.29236090085156e-11" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "76" "1.03690587909799e-51" "10" "6.77379131339683e-08" "tryptophan biosynthesis" "AraCyc" "70" "6.37280806850867e-84" "10" "1.13277900925719e-13" "response to pathogenic bacteria" "TAIR-GO" "48" "0" "7" "0" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "48" "2.29342672851833e-30" "6" "6.93982386018025e-05" "Phenylpropanoid pathway" "LitPath" "46" "9.93160693226288e-08" "8" "0.0138628374793457" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "40" "0.00506693455120801" "6" "0.129621903404289" "Benzoate degradation via CoA ligation" "KEGG" "36" "3.4265964702728e-15" "10" "8.5724522535046e-06" "Inositol phosphate metabolism" "KEGG" "36" "7.49708204212303e-14" "10" "1.98333739062095e-05" "Nicotinate and nicotinamide metabolism" "KEGG" "36" "3.45444261508984e-17" "10" "3.79114543426601e-06" "lignin biosynthesis" "AraCyc" "30" "3.83073368705022e-16" "5" "8.99367014228622e-05" "Lipid signaling" "AcylLipid" "30" "5.88081085083975e-05" "8" "0.0376990658820818" "core phenylpropanoid metabolism" "BioPath" "26" "1.06578995091975e-08" "4" "0.00527231388332665" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "26" "1.15239213952722e-12" "3" "0.00655559696074759" "response to wounding" "TAIR-GO" "26" "1.95087404241352e-13" "3" "0.0022512623977891" "Miscellaneous acyl lipid metabolism" "AcylLipid" "26" "0.000448441695033810" "7" "0.139033638309689" "triacylglycerol degradation" "AraCyc" "25" "1.80501108826543e-19" "6" "2.77206131997053e-05" "intracellular signalling" "FunCat" "19" "8.54639332291169e-12" "6" "2.29562835278774e-05" "biosynthesis of proto- and siroheme" "AraCyc" "14" "1.66597080135523e-05" "2" "0.0329752656474657" "chlorophyll biosynthesis" "AraCyc" "14" "0.000300748802482458" "2" "0.0598415189046322" "disease, virulence and defense " "FunCat" "13" "1.92220755386388e-16" "3" "7.61303896353961e-05" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "13" "0.0221515135822701" "3" "0.226837358216932" "cellulose biosynthesis" "BioPath" "12" "0.0157232688651763" "2" "0.106753596785434" "toxin catabolism" "TAIR-GO" "12" "7.06946230939465e-05" "6" "0.000126948307760054" "flavonoid biosynthesis" "AraCyc" "12" "1.10051248818124e-06" "2" "0.0107365336001130" "biogenesis of cell wall" "FunCat" "12" "0.00015184979311962" "3" "0.0196490232807497" "Alanine and aspartate metabolism" "KEGG" "12" "0.000168817897942107" "2" "0.0396742584865995" "beta-Alanine metabolism" "KEGG" "12" "2.02640098041279e-06" "2" "0.012219433170304" "Butanoate metabolism" "KEGG" "12" "1.86155084047808e-05" "2" "0.0225626123002499" "Glutamate metabolism" "KEGG" "12" "0.0106870094163338" "2" "0.0883861710818185" "Glycan Biosynthesis and Metabolism" "KEGG" "12" "0.0179368012782368" "4" "0.0186893355865863" "Phenylalanine metabolism" "KEGG" "12" "0.0135958723416803" "3" "0.166000639686501" "Taurine and hypotaurine metabolism" "KEGG" "12" "6.28764953160304e-14" "2" "0.000140247982401365" "systemic acquired resistance" "TAIR-GO" "11" "1.55171206757051e-09" "2" "0.000569740154083131" "de novo biosynthesis of purine nucleotides I" "AraCyc" "11" "0.0239138210189316" "2" "0.189452631139964" "aging" "TAIR-GO" "10" "4.82962842212049e-07" "1" "0.0174036646492648" "anthranilate synthase complex" "TAIR-GO" "10" "6.22139574334165e-13" "1" "0.000688579703100634" "ethylene biosynthesis" "TAIR-GO" "10" "1.90224752321006e-07" "1" "0.0174036646492648" "jasmonic acid biosynthesis" "TAIR-GO" "10" "0.00111164230689489" "1" "0.0883587695019469" "lignin biosynthesis" "TAIR-GO" "10" "1.84488170695488e-05" "1" "0.0219999173723447" "methionine biosynthesis" "TAIR-GO" "10" "1.51109501418278e-09" "1" "0.00399234017303846" "phenylpropanoid metabolism" "TAIR-GO" "10" "4.04039694429289e-07" "1" "0.00964591613792358" "porphyrin biosynthesis" "TAIR-GO" "10" "2.85032778011874e-05" "1" "0.0445549732618511" "sulfate assimilation" "TAIR-GO" "10" "1.78191742726790e-06" "1" "0.0174036646492648" "alanine biosynthesis II" "AraCyc" "10" "1.63216473348143e-05" "2" "0.0086525557861927" "dissimilatory sulfate reduction" "AraCyc" "10" "3.53871389734585e-08" "1" "0.00584397322472713" "jasmonic acid biosynthesis" "AraCyc" "10" "3.35797882137195e-05" "1" "0.0376780463724513" "methionine biosynthesis II" "AraCyc" "10" "5.29121546920045e-07" "1" "0.0203016185164849" "phenylalanine biosynthesis II" "AraCyc" "10" "2.71717297344329e-06" "2" "0.00601150978685824" "sulfate assimilation III" "AraCyc" "10" "0.00690665284690337" "1" "0.110376412481682" "biogenesis of chloroplast" "FunCat" "10" "0.0203796170787665" "1" "0.263559640039637" "energy" "FunCat" "10" "9.49587286033229e-17" "2" "4.13392080308172e-06" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "2" "0" "metabolism of the cysteine - aromatic group" "FunCat" "10" "1.45910272766397e-08" "1" "0.0108692305917628" "nitrogen and sulfur utilization " "FunCat" "10" "1.90267369478437e-08" "1" "0.0131464826438501" "Methionine metabolism" "KEGG" "10" "0.000144463947550544" "1" "0.0857885838998464" "Porphyrin and chlorophyll metabolism" "KEGG" "10" "0.00503567200235789" "1" "0.142117054092505" "Propanoate metabolism" "KEGG" "10" "0.000824350338681064" "1" "0.168173644549480" "Selenoamino acid metabolism" "KEGG" "10" "0.00604403587180948" "1" "0.168173644549480" "Sulfur metabolism" "KEGG" "10" "0.00156678266214882" "1" "0.101086113699816" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "10" "0.00986674250639837" "1" "0.159390032811761" "mRNA processing" "TAIR-GO" "9" "0" "1" "0" "N-terminal protein myristoylation" "TAIR-GO" "9" "9.12374371843398e-05" "1" "0.0324933648667752" "nucleotide metabolism" "TAIR-GO" "9" "4.75914849307615e-11" "1" "0.00203062540695103" "RNA processing" "TAIR-GO" "9" "0" "1" "0" "IAA conjugate biosynthesis II" "AraCyc" "9" "0" "1" "0" "ascorbic acid biosynthesis" "BioPath" "8" "0.00688022330677242" "2" "0.0154090450714952" "hemicellulose biosynthesis" "BioPath" "8" "0.00286046493790903" "1" "0.0616918284484004" "Phytic acid biosynthesis" "BioPath" "8" "0.0040562819562261" "1" "0.116126189140880" "abscisic acid mediated signaling" "TAIR-GO" "8" "2.54188420633454e-07" "1" "0.00399234017303846" "response to cold" "TAIR-GO" "8" "1.21907293085930e-05" "1" "0.0132763865314598" "response to salt stress" "TAIR-GO" "8" "5.80195779468591e-08" "1" "0.00399234017303846" "response to water deprivation" "TAIR-GO" "8" "0" "1" "0" "lipases pathway" "AraCyc" "8" "0.00182956200807647" "1" "0.0733076033338234" "degradation " "FunCat" "8" "3.74257395882631e-05" "1" "0.0665070721887387" "lipid, fatty acid and isoprenoid degradation" "FunCat" "8" "8.59757957986637e-05" "1" "0.071094638445344" "secondary metabolism" "FunCat" "8" "0.0091579384451762" "2" "0.0736863178054224" "stress response" "FunCat" "8" "0" "1" "0" "Glycerolipid metabolism" "KEGG" "8" "0.0453724011467353" "1" "0.194968421385901" "Ion channels" "KEGG" "8" "0.00409341028121765" "4" "0.00664057730150447" "Ligand-Receptor Interaction" "KEGG" "8" "0.00492078341698155" "4" "0.00787018778068686" "indole phytoalexin biosynthesis" "TAIR-GO" "7" "0" "1" "0" "response to auxin stimulus" "TAIR-GO" "7" "0.000215179135930156" "1" "0.0219999173723447" "salicylic acid biosynthesis" "TAIR-GO" "7" "4.99517240244704e-09" "1" "0.000688579703100634" "systemic acquired resistance, salicylic acid mediated signaling pathway" "TAIR-GO" "7" "4.99517240244704e-09" "1" "0.00203062540695103" "camalexin biosynthesis" "AraCyc" "7" "0" "1" "0" "resistance proteins " "FunCat" "7" "0" "1" "0" "Ascorbate and aldarate metabolism" "KEGG" "7" "0.032231184927674" "1" "0.125289104058507" "Fluorene degradation" "KEGG" "7" "0.00196785648162713" "1" "0.0512982896226879" "gamma-Hexachlorocyclohexane degradation" "KEGG" "7" "0.00483851558735462" "1" "0.0643747260244969" "camalexin biosynthesis" "LitPath" "7" "0" "1" "0"