"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "energy" "FunCat" "82" "12" "" "" "Tryptophan metabolism" "KEGG" "69" "11" "" "" "Bile acid biosynthesis" "KEGG" "60" "8" "" "" "starch biosynthesis" "AraCyc" "40" "4" "" "" "ORGAN DATA SET" "quantDE" "5.037883" "maxDE" "5.9288442" "ORGAN DATA SET" "Photosystems " "BioPath" "257" "6.27369573926459e-119" "37" "5.92272604547203e-21" "Photosystem I" "BioPath" "117" "6.57225867453639e-46" "20" "4.12769791507917e-12" "Photosynthesis" "KEGG" "115" "9.20440820396576e-136" "18" "1.99004692260511e-25" "Chlorophyll a/b binding proteins" "BioPath" "104" "6.6017890046184e-82" "13" "6.7545695261954e-14" "additional photosystem II components" "BioPath" "100" "3.31586894949289e-44" "12" "2.57993226164486e-07" "biogenesis of chloroplast" "FunCat" "86" "7.80518974627067e-34" "12" "1.28228995445453e-07" "photosynthesis" "FunCat" "73" "1.57755984224365e-35" "10" "2.2369796422728e-07" "photosystem I" "TAIR-GO" "67" "0" "8" "0" "transport " "FunCat" "64" "0" "10" "0" "Photosystem II" "BioPath" "59" "7.76022462956947e-15" "8" "0.000470581858951705" "chlorophyll binding" "TAIR-GO" "52" "1.06548894703152e-37" "6" "1.54253467504544e-06" "photosystem II" "TAIR-GO" "51" "0" "6" "0" "Carbon fixation" "KEGG" "51" "4.93106182643361e-23" "6" "0.000229734514865459" "respiration" "FunCat" "44" "2.37760337405570e-30" "6" "3.2630627525681e-07" "aerobic respiration" "FunCat" "40" "7.49543276004253e-26" "5" "7.25030698988969e-06" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "36" "0" "4" "0" "energy" "FunCat" "34" "0" "4" "0" "photosystem I reaction center" "BioPath" "32" "1.37107816881010e-28" "7" "1.62826251193664e-09" "light harvesting complex" "BioPath" "30" "9.27979998264484e-24" "4" "5.01570773127899e-06" "photosynthesis" "TAIR-GO" "30" "6.67583827559016e-11" "4" "0.00352045522060930" "photorespiration" "TAIR-GO" "28" "2.67365948003622e-31" "4" "4.39908245530774e-07" "photorespiration" "AraCyc" "28" "5.42913789908102e-13" "4" "0.00347393155121681" "photosystem I subunit precursor" "BioPath" "26" "0" "5" "0" "Calvin cycle" "AraCyc" "26" "3.61232274130674e-08" "3" "0.02820989646001" "gluconeogenesis" "AraCyc" "26" "5.04498159931275e-06" "3" "0.0483674092592184" "transport facilitation" "FunCat" "26" "0" "4" "0" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "24" "1.37151656078910e-07" "3" "0.00589693928857366" "electron transport and membrane-associated energy conservation " "FunCat" "24" "5.30672782491502e-21" "3" "0.000173441402170386" "Biosynthesis of steroids" "KEGG" "24" "1.83400244056423e-05" "3" "0.0117756528013165" "Nitrogen metabolism" "KEGG" "23" "1.34528971222992e-07" "3" "0.00318716314358435" "Glutamate/glutamine from nitrogen fixation" "BioPath" "20" "5.41561394978866e-05" "2" "0.0426157403322822" "cytochrome b6f complex" "TAIR-GO" "20" "1.85183114190078e-15" "2" "0.00279274105742225" "photosynthetic water oxidation" "TAIR-GO" "20" "0" "2" "0" "ammonia assimilation cycle" "AraCyc" "20" "2.62627813394915e-12" "2" "0.00209175832347306" "glutamine biosynthesis I" "AraCyc" "20" "1.77625376749648e-13" "2" "0.0009119993846693" "nitrate assimilation pathway" "AraCyc" "20" "1.95545325681206e-10" "2" "0.0029213736627009" "serine-isocitrate lyase pathway" "AraCyc" "20" "0.00229696162912695" "3" "0.0483674092592184" "nitrogen and sulfur metabolism" "FunCat" "20" "3.3466939139588e-05" "2" "0.0330026935194636" "jasmonic acid biosynthesis" "TAIR-GO" "19" "0.000131532680007279" "3" "0.0171397697589597" "jasmonic acid biosynthesis" "AraCyc" "19" "6.51052725849839e-07" "3" "0.00187651147009168" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "19" "0.0234396725269765" "3" "0.057723301497604" "Glutamate metabolism" "KEGG" "19" "0.000131246620551371" "2" "0.0505306322026238" "Lipid signaling" "AcylLipid" "19" "0.0260240860944734" "4" "0.154412809406885" "electron transport" "TAIR-GO" "18" "0.000341736156481253" "2" "0.0914143346790812" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "photosynthesis light harvesting" "TAIR-GO" "18" "3.61030431841095e-10" "2" "0.00721469598079068" "photosynthesis light harvesting in photosystem I" "TAIR-GO" "18" "7.7013334567349e-12" "2" "0.00469419722830438" "photosynthetic electron transport" "TAIR-GO" "18" "7.06890876928374e-13" "2" "0.00279274105742225" "glycine biosynthesis I" "AraCyc" "18" "3.45705450976877e-05" "2" "0.145173883844758" "superpathway of serine and glycine biosynthesis II" "AraCyc" "18" "1.49287204429821e-09" "2" "0.0286501878187594" "photosystem II assembly" "TAIR-GO" "17" "6.63076202284927e-20" "2" "0.000157681973102108" "photosystem II stabilization" "TAIR-GO" "17" "0" "2" "0" "ATP synthase components" "BioPath" "16" "1.07361256783949e-05" "2" "0.0205132311501189" "Carotenoid biosynthesis" "BioPath" "16" "0.000524491720051707" "2" "0.0269393655025753" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "carotenoid biosynthesis" "AraCyc" "16" "7.93560976014916e-07" "2" "0.0029213736627009" "lactose degradation IV" "AraCyc" "16" "1.90610719129616e-16" "3" "2.7945369180325e-05" "transported compounds (substrates)" "FunCat" "16" "0" "3" "0" "Fructose and mannose metabolism" "KEGG" "16" "0.000981277365336495" "2" "0.0596538218779182" "Pentose phosphate pathway" "KEGG" "16" "4.3312703345443e-05" "2" "0.0448622966725621" "Valine, leucine and isoleucine degradation" "KEGG" "16" "1.9508165450234e-05" "3" "0.0044401613483869" "carotenid biosynthesis" "LitPath" "16" "1.18249476725762e-13" "2" "0.00035807792981171" "Carotenoid and abscisic acid metabolism" "LitPath" "16" "4.45290718497451e-10" "2" "0.00266813347663059" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "16" "4.93638379283909e-10" "2" "0.00230507142041326" "MEP (methylerythritol P) pathway, plastids" "LitPath" "16" "2.68474281137198e-16" "2" "0.000185171423880544" "abscisic acid biosynthesis" "TAIR-GO" "15" "2.66624757793941e-06" "2" "0.0142698427434797" "response to water deprivation" "TAIR-GO" "15" "0" "2" "0" "Oxygen-evolving enhancer protein" "BioPath" "14" "5.3402692014566e-09" "2" "0.00215558613985071" "photosystem II antenna complex" "TAIR-GO" "14" "3.60204609036919e-15" "2" "0.000157681973102108" "acetyl-CoA assimilation" "AraCyc" "14" "0.0145339797449782" "2" "0.0740304218040032" "glyoxylate cycle" "AraCyc" "14" "0.00216411480675113" "2" "0.0322246336259658" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "1.91524491248301e-17" "2" "4.52438525540641e-05" "Fatty acid biosynthesis (path 2)" "KEGG" "14" "6.34352827793674e-11" "2" "0.000777635344128919" "Glyoxylate and dicarboxylate metabolism" "KEGG" "14" "4.16938315993255e-05" "3" "0.00192501239508352" "nitrogen and sulfur utilization " "FunCat" "13" "5.05655647317282e-05" "2" "0.00604086399023103" "Cyanoamino acid metabolism" "KEGG" "13" "3.06282706365162e-06" "2" "0.0120779369518750" "Tryptophan metabolism" "KEGG" "13" "8.41965480716213e-05" "2" "0.0277337665827441" "formaldehyde assimilation I (serine pathway)" "AraCyc" "12" "0.0268552967147393" "2" "0.0796749410242262" "galactose degradation I" "AraCyc" "12" "6.88808073704494e-11" "2" "0.0009119993846693" "glucose conversion" "AraCyc" "12" "0.0293984692585804" "2" "0.123963268979987" "UDP-glucose conversion" "AraCyc" "12" "0.0244773055363336" "2" "0.11716585523214" "accessory proteins of photosynthetic electron transport " "FunCat" "12" "0" "2" "0" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "12" "0.00220807794709656" "2" "0.0150005939955456" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "12" "0.00674562652225898" "2" "0.150136767074873" "Cytochrome b6/f complex" "BioPath" "10" "0.00213749633437127" "1" "0.103840087391541" "Plastocyanin" "BioPath" "10" "3.37109615728063e-08" "1" "0.00384897016578735" "Regulatory enzymes" "BioPath" "10" "5.46415479446756e-06" "1" "0.0110734145448916" "Thylakoid biogenesis and photosystem assembly" "BioPath" "10" "0.0113212343362262" "1" "0.0657041413639022" "aging" "TAIR-GO" "10" "0.000656227893125298" "1" "0.0664584190392305" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "2.15904450598001e-05" "1" "0.0264190885267323" "calmodulin binding" "TAIR-GO" "10" "0.00421400664584224" "2" "0.0301828531431240" "chloroplast ATP synthase complex" "TAIR-GO" "10" "2.79659847476759e-09" "1" "0.00294489856431651" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "5.27848883991735e-07" "1" "0.00851933174674532" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "fatty acid oxidation" "TAIR-GO" "10" "0" "1" "0" "hypersensitive response" "TAIR-GO" "10" "0.000177700976773655" "1" "0.0382322622613873" "photosynthesis light harvesting in photosystem II" "TAIR-GO" "10" "4.19261789861609e-06" "1" "0.0264190885267323" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "8.40887320544281e-12" "1" "0.00294489856431651" "proton transport" "TAIR-GO" "10" "2.15904450598001e-05" "1" "0.0264190885267323" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "fatty acid oxidation pathway" "AraCyc" "10" "0.0474505324368768" "1" "0.114552807920282" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "4.5786798845061e-05" "1" "0.0588192483273813" "glyceraldehyde 3-phosphate degradation" "AraCyc" "10" "0.00976518069805364" "1" "0.156788654180130" "isoleucine degradation I" "AraCyc" "10" "0.0474505324368768" "1" "0.16776751644514" "isoleucine degradation III" "AraCyc" "10" "0.000240719406177861" "1" "0.0507712015392319" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "10" "3.27641289262307e-06" "1" "0.0130173812874333" "leucine degradation I" "AraCyc" "10" "0.0474505324368768" "1" "0.16776751644514" "leucine degradation II" "AraCyc" "10" "0.000240719406177861" "1" "0.0507712015392319" "peptidoglycan biosynthesis" "AraCyc" "10" "2.59976151549831e-07" "1" "0.0233372244211645" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "10" "2.47053632326520e-09" "1" "0.00885596055572784" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "sucrose biosynthesis" "AraCyc" "10" "0.0118898226469626" "1" "0.124817191249644" "sucrose degradation III" "AraCyc" "10" "0.00123144862566269" "1" "0.0852698993976659" "thiamine biosynthesis" "AraCyc" "10" "4.19987664688222e-08" "1" "0.0130173812874333" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "6.5626950005735e-06" "1" "0.0178595340485389" "C-compound and carbohydrate utilization " "FunCat" "10" "1.45464841367659e-12" "1" "0.00128081233503051" "C-compound, carbohydrate anabolism" "FunCat" "10" "0.0036434352543434" "1" "0.14743825956333" "electron / hydrogen transport " "FunCat" "10" "6.33037438605035e-07" "1" "0.0174724093980959" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "ATP synthesis" "KEGG" "10" "0.0194421395129499" "1" "0.183115201973008" "Benzoate degradation via hydroxylation" "KEGG" "10" "7.73969028519167e-06" "1" "0.0152939676016190" "Bile acid biosynthesis" "KEGG" "10" "7.22967276199331e-05" "1" "0.0378220918217604" "Peptidoglycan biosynthesis" "KEGG" "10" "1.35860921554288e-08" "1" "0.00362090097656062" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "10" "0.00471872919689945" "1" "0.230204872141694" "calcium ion transport" "TAIR-GO" "9" "1.32831841267300e-08" "1" "0.00294489856431651" "ethylene biosynthesis" "TAIR-GO" "9" "0.00122139472794234" "1" "0.0664584190392305" "myo-inositol biosynthesis" "TAIR-GO" "9" "0" "1" "0" "acrylonitrile degradation" "AraCyc" "9" "2.35974015253935e-10" "1" "0.00542265393497967" "alanine biosynthesis II" "AraCyc" "9" "0.034142932282259" "1" "0.178874463632562" "alanine degradation III" "AraCyc" "9" "2.40079308772113e-09" "1" "0.00276712263130249" "aldoxime degradation" "AraCyc" "9" "2.35974015253935e-10" "1" "0.00542265393497967" "IAA biosynthesis" "AraCyc" "9" "0.0099353895780375" "1" "0.0507712015392319" "IAA biosynthesis I" "AraCyc" "9" "0.000780396309734569" "1" "0.0294073575919334" "Alanine and aspartate metabolism" "KEGG" "9" "0.0265227630107952" "1" "0.121751724568349" "Membrane Transport" "KEGG" "9" "0.000163982562107018" "1" "0.0675663852031188" "Other ion-coupled transporters" "KEGG" "9" "3.99192429112538e-06" "1" "0.0218728030314398" "Streptomycin biosynthesis" "KEGG" "9" "8.11556582265493e-05" "1" "0.0255266458183526" "photosystem II type II chlorophyll a /b binding protein" "BioPath" "8" "0.000401189255662962" "1" "0.02124327226089" "ATP-dependent proteolysis" "TAIR-GO" "8" "0.00228009566648045" "2" "0.0188535956650305" "carotenoid biosynthesis" "TAIR-GO" "8" "0.0175681856749723" "1" "0.0664584190392305" "cuticle biosynthesis" "TAIR-GO" "8" "0.0209102376702996" "1" "0.136114762138861" "photosynthetic electron transport in photosystem I" "TAIR-GO" "8" "6.97846896808722e-06" "1" "0.00851933174674532" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "response to ethylene stimulus" "TAIR-GO" "8" "0.00301501922611077" "2" "0.0369239746246709" "response to osmotic stress" "TAIR-GO" "8" "1.01188056189563e-05" "1" "0.0164330359968005" "sugar mediated signaling" "TAIR-GO" "8" "0.00344651576940823" "1" "0.0382322622613873" "wax biosynthesis" "TAIR-GO" "8" "0.00445403806931815" "1" "0.0516474882746205" "xanthophyll biosynthesis " "TAIR-GO" "8" "0" "1" "0" "epicuticular wax biosynthesis" "AraCyc" "8" "3.8286876009757e-07" "1" "0.00276712263130249" "xanthophyll cycle" "AraCyc" "8" "2.8018278759778e-08" "1" "0.000941401962452327" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "8" "0.0156087836684429" "1" "0.0879605606829485" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "response to jasmonic acid stimulus" "TAIR-GO" "7" "0.0144267486921741" "1" "0.0516474882746205" "response to pest, pathogen or parasite" "TAIR-GO" "7" "1.17924366794756e-09" "1" "0.00294489856431651" "lipoxygenase pathway" "AraCyc" "7" "0.0295282585182024" "1" "0.0507712015392319" "stress response" "FunCat" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "2.522269" "maxDE" "11.33513" "STRESS DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "22" "0.0178955026315110" "3" "0.357739987359451" "C-compound and carbohydrate utilization " "FunCat" "20" "0" "2" "0" "Phenylpropanoid Metabolism" "BioPath" "18" "0.00307555425902650" "2" "0.200890685949576" "indoleacetic acid biosynthesis" "TAIR-GO" "18" "4.40998817801766e-28" "2" "5.34438196168202e-06" "IAA biosynthesis" "AraCyc" "18" "8.78021994774092e-16" "2" "0.000471999205770694" "IAA biosynthesis I" "AraCyc" "18" "7.92214751252388e-19" "2" "0.000185484802992505" "plant / fungal specific systemic sensing and response " "FunCat" "18" "2.7520690960305e-18" "2" "0.000275266237174973" "plant hormonal regulation" "FunCat" "18" "2.7520690960305e-18" "2" "0.000275266237174973" "Bile acid biosynthesis" "KEGG" "17" "1.13386434678667e-15" "2" "0.000315505750664996" "Fatty acid metabolism" "KEGG" "17" "8.96259330409072e-09" "2" "0.00302799312223536" "Glycerolipid metabolism" "KEGG" "17" "9.37816581787106e-10" "2" "0.00277731320211434" "Glycolysis / Gluconeogenesis" "KEGG" "17" "1.69141506057122e-05" "2" "0.0286884928351362" "Pyruvate metabolism" "KEGG" "17" "1.69141506057122e-05" "2" "0.0240900920513947" "Tryptophan metabolism" "KEGG" "17" "3.79590102789651e-12" "2" "0.00302799312223536" "vitamin E biosynthesis" "AraCyc" "14" "2.33013103000011e-14" "2" "7.8785623791067e-05" "ascorbic acid biosynthesis" "BioPath" "12" "3.42264174147063e-10" "2" "0.000778766676543775" "secondary metabolism" "FunCat" "12" "6.94503129619784e-07" "2" "0.00805738258245411" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "12" "1.77420556643232e-05" "2" "0.0533483901112378" "Gluconeogenesis from lipids in seeds" "BioPath" "11" "0.000400620006649258" "2" "0.0222025972515997" "Tyrosine metabolism" "KEGG" "11" "6.34958300672738e-05" "2" "0.00482402233365788" "Glucosyltransferases for benzoic acids" "BioPath" "10" "5.59733404930432e-08" "1" "0.00576225524807555" "starch metabolism" "BioPath" "10" "1.58188282361521e-06" "1" "0.0292648349623694" "Tocopherol biosynthesis" "BioPath" "10" "1.39985005162550e-12" "1" "0.000772196582379033" "glucosinolate biosynthesis" "TAIR-GO" "10" "2.47105433362355e-10" "1" "0.00191776065234240" "starch biosynthesis" "TAIR-GO" "10" "2.83754865622504e-11" "1" "0.00144568300143744" "vitamin E biosynthesis" "TAIR-GO" "10" "7.54017825962388e-14" "1" "0.000419431245256882" "glucosinolate biosynthesis from homomethionine" "AraCyc" "10" "4.77629194554561e-10" "1" "0.00174913611498711" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "Folate biosynthesis" "KEGG" "10" "1.06210828236339e-08" "2" "0.000315505750664996" "Starch and sucrose metabolism" "KEGG" "10" "0.0344778680664005" "1" "0.138617840512906" "Glucosinolate Metabolism" "LitPath" "10" "1.90772435996111e-10" "1" "0.00219137162606805" "tocopherol (vitamin E) biosynthesis" "LitPath" "10" "2.73145773570254e-22" "1" "1.30332216820676e-05" "fatty acid beta oxidation complex" "BioPath" "9" "2.65090305012890e-07" "1" "0.0162388594577419" "development" "TAIR-GO" "9" "0.000177147435064711" "1" "0.0374233850175649" "flower development" "TAIR-GO" "9" "5.27840461748133e-12" "1" "0.000695489154120349" "response to pathogenic bacteria" "TAIR-GO" "9" "3.09041424920757e-12" "1" "0.000695489154120349" "seed germination" "TAIR-GO" "9" "4.64872718471876e-21" "1" "0" "fatty acid oxidation pathway" "AraCyc" "9" "9.4484740238474e-05" "1" "0.0264998020995437" "isoleucine degradation I" "AraCyc" "9" "9.4484740238474e-05" "1" "0.0409778115748674" "isoleucine degradation III" "AraCyc" "9" "1.74927197301257e-07" "1" "0.0108640558269866" "leucine degradation I" "AraCyc" "9" "9.4484740238474e-05" "1" "0.0409778115748674" "leucine degradation II" "AraCyc" "9" "1.74927197301257e-07" "1" "0.0108640558269866" "valine degradation I" "AraCyc" "9" "7.3533818237481e-05" "1" "0.0765007877648686" "valine degradation II" "AraCyc" "9" "1.30719562655802e-07" "1" "0.021441423402353" "fermentation" "FunCat" "9" "7.08148218201216e-10" "1" "0.00354171072111197" "oxidation of fatty acids " "FunCat" "9" "4.22164425549408e-20" "1" "4.75977556937012e-05" "1- and 2-Methylnaphthalene degradation" "KEGG" "9" "4.70545079646428e-09" "1" "0.00462654427165653" "Benzoate degradation via CoA ligation" "KEGG" "9" "0.0253696855158363" "1" "0.181732131157807" "Cyanoamino acid metabolism" "KEGG" "9" "4.09082813453331e-06" "1" "0.0195905620313143" "Methane metabolism" "KEGG" "9" "0.000807583713472283" "1" "0.156807412790802" "Nitrogen metabolism" "KEGG" "9" "0.00266872688289051" "1" "0.0311829564234042" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "9" "0.000162386827275221" "1" "0.118194224893694" "Flavonoid and anthocyanin metabolism" "BioPath" "8" "0.00015075702984607" "1" "0.0871766277211728" "cuticle biosynthesis" "TAIR-GO" "8" "2.06452254223887e-08" "1" "0.00442911185270155" "fatty acid metabolism" "TAIR-GO" "8" "6.917169427574e-05" "1" "0.0188432284337" "long-chain fatty acid metabolism" "TAIR-GO" "8" "9.88014144029918e-07" "1" "0.00889704392508557" "very-long-chain fatty acid metabolism" "TAIR-GO" "8" "1.73093283657039e-07" "1" "0.00693937937124742" "wax biosynthesis" "TAIR-GO" "8" "2.27842693861696e-09" "1" "0.00144568300143744" "4-hydroxyproline degradation" "AraCyc" "8" "3.89683785711974e-07" "1" "0.00913204639011726" "acetyl-CoA assimilation" "AraCyc" "8" "0.00270377528948608" "1" "0.0687926661834918" "arginine degradation IX" "AraCyc" "8" "3.89683785711974e-07" "1" "0.0108640558269866" "epicuticular wax biosynthesis" "AraCyc" "8" "5.81813354186135e-11" "1" "0.000533964259312498" "glyoxylate cycle" "AraCyc" "8" "0.000630484633272453" "1" "0.037885607542301" "phenylalanine degradation I" "AraCyc" "8" "0.00048605586539532" "3" "0.000416442342546365" "proline degradation I" "AraCyc" "8" "9.30793400025078e-05" "1" "0.0348885915380802" "proline degradation II" "AraCyc" "8" "2.83570014886091e-07" "1" "0.00913204639011726" "serine-isocitrate lyase pathway" "AraCyc" "8" "0.0159875483638173" "1" "0.123067899572993" "TCA cycle -- aerobic respiration" "AraCyc" "8" "0.0123043098559648" "1" "0.132153160077570" "TCA cycle variation IV" "AraCyc" "8" "0.0107202177158528" "1" "0.123067899572993" "TCA cycle variation VIII" "AraCyc" "8" "0.0204226612437143" "1" "0.141389473387965" "tyrosine degradation" "AraCyc" "8" "8.28415075537965e-08" "3" "5.91113353678233e-06" "energy" "FunCat" "8" "1.98807074765923e-14" "1" "0.000142181863668211" "energy conversion and regeneration " "FunCat" "8" "8.45090927122813e-16" "1" "0.000142181863668211" "1,2-Dichloroethane degradation" "KEGG" "8" "7.51331127119386e-13" "1" "0.000439453282629344" "Arginine and proline metabolism" "KEGG" "8" "0.00358802640483668" "1" "0.0512850380225979" "Ascorbate and aldarate metabolism" "KEGG" "8" "0.000545344068232834" "1" "0.0195905620313143" "beta-Alanine metabolism" "KEGG" "8" "3.84049687669315e-05" "1" "0.0127495734502771" "Butanoate metabolism" "KEGG" "8" "0.000181154913735879" "1" "0.0195905620313143" "Histidine metabolism" "KEGG" "8" "3.77256805228197e-06" "1" "0.0115373266514630" "Limonene and pinene degradation" "KEGG" "8" "1.87810387565334e-11" "1" "0.00108663410944444" "Lysine degradation" "KEGG" "8" "3.42799533594508e-06" "1" "0.0153328793380479" "Propanoate metabolism" "KEGG" "8" "0.000380531343075184" "1" "0.0276458501540081" "Valine, leucine and isoleucine degradation" "KEGG" "8" "0.00127024427028547" "1" "0.0368048088226588" "HORMONE DATA SET" "quantDE" "1.78857" "maxDE" "3.6839141" "HORMONE DATA SET" "beta-Alanine metabolism" "KEGG" "31" "2.09804737560930e-24" "6" "1.33743927349061e-07" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "30" "3.16782913345745e-05" "3" "0.0753188720913607" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "30" "1.04411455745247e-09" "3" "0.179226596957381" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "25" "1.22935501561792e-06" "3" "0.00788566905165411" "lignin biosynthesis" "AraCyc" "24" "1.76262401033558e-14" "4" "0.000563059289962931" "Glutathione metabolism" "KEGG" "24" "2.17697894641854e-09" "3" "0.0136432313823270" "Miscellaneous acyl lipid metabolism" "AcylLipid" "24" "9.92270601148894e-09" "6" "0.00510764931268445" "Phenylpropanoid pathway" "LitPath" "24" "1.44314458037213e-07" "4" "0.0161587513001781" "Urea cycle and metabolism of amino groups" "KEGG" "22" "6.43112991239508e-14" "3" "0.00175710185589063" "Phenylpropanoid Metabolism" "BioPath" "20" "0.0302621327508493" "2" "0.235716758395407" "Prolin/Hydroxyproline from glutamate" "BioPath" "20" "3.02368345658203e-25" "2" "9.59894819362802e-05" "hyperosmotic salinity response" "TAIR-GO" "20" "1.03432095464215e-20" "2" "0.000359929466664827" "proline biosynthesis" "TAIR-GO" "20" "1.65156029055089e-26" "2" "1.27682115056116e-05" "response to abscisic acid stimulus" "TAIR-GO" "20" "1.33335839221402e-18" "2" "0.0006463361865108" "phenylalanine degradation I" "AraCyc" "20" "4.57793680093976e-16" "4" "5.14474863011171e-05" "tyrosine degradation" "AraCyc" "20" "1.08226321777866e-26" "4" "1.97508744096856e-07" "biogenesis of cell wall" "FunCat" "20" "4.34536569547222e-11" "2" "0.0206422979896964" "C-compound and carbohydrate utilization " "FunCat" "20" "0" "2" "0" "secondary metabolism" "FunCat" "20" "6.69424901260898e-12" "2" "0.0173807823784522" "Tyrosine metabolism" "KEGG" "20" "2.04280879465090e-07" "4" "0.00176465749606777" "Intermediary Carbon Metabolism" "BioPath" "18" "0.0197036297535326" "2" "0.196664595088795" "response to water deprivation" "TAIR-GO" "18" "0" "2" "0" "Fatty acid metabolism" "KEGG" "18" "1.37596227063410e-05" "3" "0.00647067029780896" "Glycerolipid metabolism" "KEGG" "16" "2.62273391797882e-05" "3" "0.00580695378353633" "Pyruvate metabolism" "KEGG" "16" "0.0300165964243222" "3" "0.076052477958739" "Nucleotide Metabolism" "KEGG" "15" "0.0205325023994609" "2" "0.240581705136555" "Pantothenate and CoA biosynthesis" "KEGG" "15" "4.85738006266519e-09" "2" "0.00933611750090677" "Pyrimidine metabolism" "KEGG" "15" "1.32700560083949e-05" "2" "0.058862141980848" "Arginine and proline metabolism" "KEGG" "14" "0.000457638387560961" "3" "0.0136432313823270" "Histidine metabolism" "KEGG" "14" "5.2130144242192e-09" "3" "0.000698009432124382" "Phenylalanine metabolism" "KEGG" "14" "0.00748129930356443" "3" "0.128701417792455" "Propanoate metabolism" "KEGG" "14" "1.19794114790338e-05" "3" "0.00409204406072312" "Tryptophan metabolism" "KEGG" "14" "6.90305827352898e-06" "3" "0.00647067029780896" "toxin catabolism" "TAIR-GO" "12" "1.84584390883894e-06" "2" "0.0296757556695655" "4-hydroxyproline degradation" "AraCyc" "12" "9.73135830087748e-13" "2" "0.00056447645747551" "arginine degradation IX" "AraCyc" "12" "9.73135830087748e-13" "2" "0.000744185601543593" "proline degradation I" "AraCyc" "12" "5.40815595970662e-09" "2" "0.00465486224430256" "proline degradation II" "AraCyc" "12" "5.91524591177471e-13" "2" "0.00056447645747551" "1,2-Dichloroethane degradation" "KEGG" "12" "1.12834941852586e-17" "2" "4.24509110987401e-05" "Ascorbate and aldarate metabolism" "KEGG" "12" "0.000317065383732369" "2" "0.017384856686902" "Basal transcription factors" "KEGG" "12" "7.58560318638172e-06" "2" "0.0421946276922582" "Bile acid biosynthesis" "KEGG" "12" "8.8040709804199e-07" "2" "0.00489135952705038" "Butanoate metabolism" "KEGG" "12" "7.11472423439209e-05" "2" "0.017384856686902" "Limonene and pinene degradation" "KEGG" "12" "2.86143668818779e-15" "2" "0.000205444220427946" "Lysine degradation" "KEGG" "12" "2.74471564936629e-07" "2" "0.0122133206978730" "Transcription" "KEGG" "12" "0.0453614471667907" "2" "0.246599553123070" "Valine, leucine and isoleucine degradation" "KEGG" "12" "0.000978268859880466" "2" "0.0421946276922582" "Chloroplastic protein turnover" "BioPath" "10" "5.23605433131044e-10" "1" "0.00574420863711435" "core phenylpropanoid metabolism" "BioPath" "10" "0.00217218987649993" "1" "0.0707400438501973" "ERD1 protease (ClpC-like)" "BioPath" "10" "0" "1" "0" "Glucosyltransferases for benzoic acids" "BioPath" "10" "1.90504429745775e-06" "1" "0.00674782118546649" "Glutathione metabolism" "BioPath" "10" "0.0304418083749409" "1" "0.145562393083522" "Tocopherol biosynthesis" "BioPath" "10" "6.44177001772019e-11" "1" "0.00090791163006295" "acyl-CoA binding" "TAIR-GO" "10" "6.62199636498682e-15" "1" "0.000225891531560163" "ATP-dependent proteolysis" "TAIR-GO" "10" "1.93709802673008e-09" "1" "0.0114025744113227" "carotenoid biosynthesis" "TAIR-GO" "10" "5.86600441501538e-08" "1" "0.00597292025134671" "gibberellic acid biosynthesis" "TAIR-GO" "10" "3.15971743823457e-06" "1" "0.0114025744113227" "glucose metabolism" "TAIR-GO" "10" "2.54127335995431e-10" "1" "0.00219507189929603" "glucosinolate biosynthesis" "TAIR-GO" "10" "3.27432121251782e-07" "1" "0.00597292025134671" "lignin biosynthesis" "TAIR-GO" "10" "6.90965932673306e-07" "1" "0.00760673285275717" "lipid transport" "TAIR-GO" "10" "1.53668965118883e-09" "1" "0.00452256182826017" "pentose-phosphate shunt" "TAIR-GO" "10" "2.51426627782205e-07" "1" "0.0135538220562850" "pentose-phosphate shunt, oxidative branch" "TAIR-GO" "10" "2.54127335995431e-10" "1" "0.00219507189929603" "plastoquinone biosynthesis" "TAIR-GO" "10" "1.44684827389921e-14" "1" "0.000225891531560163" "response to dessication" "TAIR-GO" "10" "2.00944996659477e-13" "1" "0.00132967947273821" "vitamin E biosynthesis" "TAIR-GO" "10" "1.41967581970862e-10" "1" "0.00132967947273821" "gibberellin biosynthesis" "AraCyc" "10" "3.17518363518377e-08" "1" "0.0146059473174312" "glucosinolate biosynthesis from homomethionine" "AraCyc" "10" "8.61273961455837e-11" "1" "0.00237636534658354" "oxidative branch of the pentose phosphate pathway" "AraCyc" "10" "2.09931042139312e-10" "1" "0.0170876493076245" "plastoquinone biosynthesis" "AraCyc" "10" "6.52226843183476e-14" "1" "0.00144046461665512" "suberin biosynthesis" "AraCyc" "10" "2.65913549119580e-06" "1" "0.0318687706757957" "vitamin E biosynthesis" "AraCyc" "10" "4.74971166300009e-10" "1" "0.00488957491352363" "cellular sensing and response " "FunCat" "10" "3.23819927128923e-19" "1" "8.36566615222628e-05" "chemoperception and response" "FunCat" "10" "3.23819927128923e-19" "1" "8.36566615222628e-05" "osmosensing" "FunCat" "10" "0" "1" "0" "pentose-phosphate pathway " "FunCat" "10" "2.50874711823269e-07" "1" "0.0157433891565122" "plant / fungal specific systemic sensing and response " "FunCat" "10" "3.53426231768111e-07" "1" "0.0129677976932248" "plant hormonal regulation" "FunCat" "10" "3.53426231768111e-07" "1" "0.0129677976932248" "stress response" "FunCat" "10" "0" "1" "0" "Diterpenoid biosynthesis" "KEGG" "10" "0.00021853247785429" "1" "0.0281756764065201" "Pentose phosphate pathway" "KEGG" "10" "0.0126833802560531" "1" "0.232894450188765" "Gibberellin metabolism" "LitPath" "10" "6.76287718155413e-05" "1" "0.0450098628205958" "giberelin biosynthesis" "LitPath" "10" "2.20853362235224e-06" "1" "0.0270643834407711" "Glucosinolate Metabolism" "LitPath" "10" "0.00118251861128521" "1" "0.0552730646654216" "Carotenoid biosynthesis" "BioPath" "8" "6.06267971826812e-06" "1" "0.00481579030110053" "abscisic acid biosynthesis" "TAIR-GO" "8" "7.81277893161365e-06" "1" "0.00941843369928026" "response to osmotic stress" "TAIR-GO" "8" "6.94358338779879e-10" "1" "0.00132967947273821" "sugar mediated signaling" "TAIR-GO" "8" "6.2738790753447e-07" "1" "0.00326134321138527" "xanthophyll biosynthesis " "TAIR-GO" "8" "0" "1" "0" "carotenoid biosynthesis" "AraCyc" "8" "6.2609345000183e-06" "1" "0.0101627123816364" "threonine degradation" "AraCyc" "8" "5.42308514394869e-07" "3" "0.000275463472187449" "xanthophyll cycle" "AraCyc" "8" "8.74327081457593e-13" "1" "0.000245043053801066" "energy" "FunCat" "8" "2.83971615282336e-13" "1" "0.000249519291014379" "energy conversion and regeneration " "FunCat" "8" "1.22109687251845e-14" "1" "0.000249519291014379" "carotenid biosynthesis" "LitPath" "8" "9.91471978664448e-05" "1" "0.0195410929762410" "Carotenoid and abscisic acid metabolism" "LitPath" "8" "0.00364507551959886" "1" "0.0662974152313839" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "7" "0.0125221908246948" "1" "0.060694528607781" "MEP (methylerythritol P) pathway, plastids" "LitPath" "7" "5.06951741947743e-05" "1" "0.0130972747988101" "MUTANT DATA SET" "quantDE" "2.225779" "maxDE" "8.688775382" "MUTANT DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "155" "3.2174975309447e-05" "28" "0.0365248223561773" "Photosystems " "BioPath" "138" "5.34852212899808e-16" "17" "0.00271774182852665" "Intermediary Carbon Metabolism" "BioPath" "118" "2.60072037195575e-05" "20" "0.0207046662273534" "biogenesis of chloroplast" "FunCat" "96" "8.93110653470307e-21" "13" "0.0001951172671852" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "93" "0.000221251113455652" "12" "0.0199224479053514" "transport " "FunCat" "75" "0" "14" "0" "Chlorophyll a/b binding proteins" "BioPath" "72" "1.42456190891751e-32" "9" "7.1226419202906e-07" "Carbon fixation" "KEGG" "71" "2.26762557274476e-11" "12" "0.00063183584446537" "photosynthesis" "FunCat" "70" "3.88614522336127e-17" "11" "9.63374407295354e-05" "additional photosystem II components" "BioPath" "66" "6.29119088340215e-12" "8" "0.00416192332848851" "Glycolysis / Gluconeogenesis" "KEGG" "65" "1.17035733914236e-06" "11" "0.00878995210072603" "Chlorophyll biosynthesis and breakdown" "BioPath" "56" "5.44929133494105e-08" "6" "0.0177836792696206" "Calvin cycle" "AraCyc" "56" "2.61316359271074e-19" "10" "5.00893226043045e-05" "chlorophyll and phytochromobilin metabolism" "LitPath" "50" "8.24107743331695e-12" "5" "0.0108833946524694" "development" "TAIR-GO" "47" "3.02178763896091e-07" "6" "0.0231933638066938" "Oxidative phosphorylation" "KEGG" "47" "6.31459348515364e-06" "11" "0.00570854222599845" "Pyruvate metabolism" "KEGG" "47" "0.0263749535987698" "6" "0.266974516633977" "chlorophyll biosynthesis" "TAIR-GO" "46" "2.22155255056497e-17" "5" "0.000462636316846467" "chlorophyll biosynthesis" "AraCyc" "46" "1.21765068301485e-06" "5" "0.172795489417937" "chlorophyll binding" "TAIR-GO" "42" "2.67326130790753e-19" "5" "0.000283321715296095" "Glutamate metabolism" "KEGG" "42" "0.000346282781464845" "5" "0.0881813764965811" "Pentose phosphate pathway" "KEGG" "42" "3.56395258314742e-08" "9" "0.000520119432149444" "Translation factors" "KEGG" "42" "0.00509372372279078" "8" "0.17000953852297" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "40" "2.61236406400338e-06" "4" "0.103207234907186" "Citrate cycle (TCA cycle)" "KEGG" "38" "3.02053186484530e-05" "5" "0.0732733168941913" "Selenoamino acid metabolism" "KEGG" "36" "2.33430718736162e-05" "4" "0.0623448301747233" "Glycerolipid metabolism" "KEGG" "35" "0.000100831984811553" "5" "0.0292157426463543" "Sulfur metabolism" "KEGG" "35" "8.74781797797195e-07" "4" "0.0184748384155848" "Nitrogen metabolism" "KEGG" "33" "0.00811288852119139" "4" "0.0783975786946482" "acetate fermentation" "AraCyc" "32" "0.0388947938058915" "8" "0.0553753752943933" "aerobic respiration" "FunCat" "32" "2.92896602021022e-10" "5" "0.00062048774337819" "energy" "FunCat" "32" "0" "6" "0" "respiration" "FunCat" "32" "2.92896602021022e-10" "5" "0.00062048774337819" "Glutathione metabolism" "KEGG" "32" "0.00765116216230857" "4" "0.186479738002392" "transport facilitation" "FunCat" "31" "0" "6" "0" "Fatty acid metabolism" "KEGG" "31" "0.0155202434761657" "4" "0.0964541313746086" "light harvesting complex" "BioPath" "30" "7.62256905891198e-20" "4" "2.30471846564345e-05" "Protein folding / chaperonins (chloroplast)" "BioPath" "30" "2.18113627787393e-11" "4" "0.00436418525091315" "sterol biosynthesis" "BioPath" "30" "0.0162938375192586" "3" "0.171735134011467" "sterol biosynthesis" "TAIR-GO" "30" "2.13911389576972e-05" "3" "0.0736140313771024" "Methionine metabolism" "KEGG" "30" "2.38715797999596e-07" "3" "0.052471740793404" "brassinosteroid biosynthesis" "LitPath" "30" "3.36708680960612e-07" "3" "0.0323824253749304" "chlorophyll biosynthesis" "LitPath" "30" "3.18691816317486e-15" "3" "0.00116197414501720" "sterol and brassinosteroid biosynthesis" "LitPath" "30" "2.47896918870407e-10" "3" "0.00963419175616505" "calmodulin binding" "TAIR-GO" "28" "1.43373658581772e-12" "4" "0.00253921508963948" "leucine biosynthesis" "AraCyc" "28" "1.65571328330028e-14" "4" "0.00437535212484675" "plant / fungal specific systemic sensing and response " "FunCat" "28" "1.15575190163143e-06" "3" "0.0572306845730892" "plant hormonal regulation" "FunCat" "28" "1.15575190163143e-06" "3" "0.0572306845730892" "Alanine and aspartate metabolism" "KEGG" "28" "0.000967106656456066" "3" "0.184743383456332" "Cysteine metabolism" "KEGG" "28" "0.000496063293864224" "4" "0.04211843075943" "regulation of transcription" "TAIR-GO" "27" "0" "3" "0" "photorespiration" "AraCyc" "27" "2.95886386627936e-06" "4" "0.0961834228653203" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "26" "3.91856561310578e-20" "3" "4.96577513836545e-05" "fatty acid biosynthesis" "TAIR-GO" "26" "7.0195629214981e-06" "3" "0.0284802311022759" "TCA cycle -- aerobic respiration" "AraCyc" "26" "0.039871704116483" "4" "0.253276752663974" "Ascorbate and aldarate metabolism" "KEGG" "26" "0.00158507213752171" "4" "0.0311928575895418" "ATP synthesis" "KEGG" "26" "0.0125641346629177" "5" "0.0664048732527956" "Tryptophan metabolism" "KEGG" "25" "0.000818726743435139" "4" "0.0964541313746086" "ascorbic acid biosynthesis" "BioPath" "24" "0.000909785773556564" "3" "0.0949482266449352" "embryonic development" "TAIR-GO" "24" "0.000488556136334246" "3" "0.062721951887359" "ascorbate glutathione cycle" "AraCyc" "23" "1.00130965196866e-06" "4" "0.00437535212484675" "Cyanoamino acid metabolism" "KEGG" "23" "4.78375434717535e-05" "3" "0.103429526100994" "Propanoate metabolism" "KEGG" "22" "0.0129492222805922" "3" "0.169952840372428" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "22" "0.000203524334280219" "3" "0.052471740793404" "metabolism of acyl-lipids in mitochondria" "AcylLipid" "22" "4.81148097606531e-06" "3" "0.0196345525355741" "beta-Alanine metabolism" "KEGG" "21" "0.000597854364159965" "3" "0.052471740793404" "Bile acid biosynthesis" "KEGG" "21" "2.86497542822929e-05" "3" "0.0247592604691171" "Butanoate metabolism" "KEGG" "21" "0.00797276616190741" "3" "0.103429526100994" "Glucosyltransferases for benzoic acids" "BioPath" "20" "0.0201604017558251" "2" "0.0903827644042215" "Other cell wall metabolism related enzymes" "BioPath" "20" "0" "2" "0" "methionine biosynthesis" "TAIR-GO" "20" "7.78088813264063e-14" "2" "0.00200092026535223" "protein biosynthesis" "TAIR-GO" "20" "0" "4" "0" "homocysteine and cysteine interconversion" "AraCyc" "20" "7.13240768877986e-09" "2" "0.0310186318622112" "methionine biosynthesis II" "AraCyc" "20" "2.40881069726426e-06" "2" "0.0629216330809565" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "20" "4.70874899445638e-11" "2" "0.0106509046309386" "electron transport and membrane-associated energy conservation " "FunCat" "20" "1.09049977068239e-10" "4" "0.000285148430206611" "photorespiration" "TAIR-GO" "19" "2.46627287851268e-13" "3" "0.000199573620553038" "fatty acid oxidation pathway" "AraCyc" "19" "0.0117303721239560" "2" "0.155411191426525" "degradation " "FunCat" "19" "0.00436154725425706" "2" "0.33798272900608" "transcription" "FunCat" "19" "3.57011176236599e-08" "4" "0.00325726920328879" "Protein folding and associated processing" "KEGG" "19" "0.00660528149829323" "2" "0.292147495160314" "Thylakoid biogenesis and photosystem assembly" "BioPath" "18" "2.80177464611187e-05" "2" "0.016114958101926" "indoleacetic acid biosynthesis" "TAIR-GO" "18" "4.28095339692037e-10" "2" "0.00470294023255102" "IAA biosynthesis" "AraCyc" "18" "0.000285596817159741" "2" "0.0510615260789695" "IAA biosynthesis I" "AraCyc" "18" "1.59769051527347e-06" "2" "0.0229219399209051" "isoleucine biosynthesis I" "AraCyc" "18" "1.59643389882616e-06" "3" "0.0246903680180733" "valine biosynthesis" "AraCyc" "18" "1.59643389882616e-06" "3" "0.0246903680180733" "Phytic acid biosynthesis" "BioPath" "17" "0.0488903325343006" "2" "0.306757950937575" "isoleucine degradation I" "AraCyc" "17" "0.0417075922254321" "3" "0.0916439236882522" "isoleucine degradation III" "AraCyc" "17" "1.09707338738246e-05" "3" "0.00845632306966585" "leucine degradation I" "AraCyc" "17" "0.0417075922254321" "3" "0.0916439236882522" "leucine degradation II" "AraCyc" "17" "1.09707338738246e-05" "3" "0.00845632306966585" "valine degradation I" "AraCyc" "17" "0.0323138092073685" "3" "0.230872588809308" "valine degradation II" "AraCyc" "17" "6.95860230723554e-06" "3" "0.0304916270778128" "ATP synthase components" "BioPath" "16" "0.000462925743734558" "2" "0.0457115483819249" "magnesium chelatase complex" "TAIR-GO" "16" "0" "2" "0" "photosystem I" "TAIR-GO" "16" "2.81017677170767e-07" "2" "0.0145601441567701" "protein folding" "TAIR-GO" "16" "0" "2" "0" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "4-hydroxyproline degradation" "AraCyc" "16" "3.28117190783262e-06" "3" "0.00597438262372467" "biosynthesis of pyrimidine ribonucleotides" "AraCyc" "16" "0.00239440942769908" "3" "0.080768786615192" "de novo biosynthesis of pyrimidine ribonucleotides" "AraCyc" "16" "0.00188547068240717" "3" "0.0705779982046627" "oxidative branch of the pentose phosphate pathway" "AraCyc" "16" "1.41903670943608e-06" "4" "0.00154541881363523" "nucleotide metabolism" "FunCat" "16" "0" "4" "0" "transport routes " "FunCat" "16" "0.00217456809060624" "3" "0.048055194648094" "Histidine metabolism" "KEGG" "16" "0.00176714442380293" "3" "0.0444286087219723" "Pantothenate and CoA biosynthesis" "KEGG" "16" "0.00768143806881953" "2" "0.173929794006537" "polyamine biosynthesis II" "AraCyc" "15" "0.0287517823792814" "2" "0.121062304234972" "polyamine biosynthesis III" "AraCyc" "15" "0.000221445208018185" "2" "0.0404102253266436" "Delta-pH pathway" "BioPath" "14" "5.77878320652355e-10" "2" "0.000595218929480999" "Translation (chloroplast)" "BioPath" "14" "1.44046330881422e-05" "2" "0.016114958101926" "embryonic development (sensu Magnoliophyta)" "TAIR-GO" "14" "0.0208401047462732" "2" "0.0994014009533346" "pentose-phosphate shunt" "TAIR-GO" "14" "0.00277858528144689" "3" "0.0125227668819136" "proteasome regulatory particle, base subcomplex (sensu Eukaryota)" "TAIR-GO" "14" "0.000643860792996884" "2" "0.0416122012996666" "mannitol degradation" "AraCyc" "14" "0.0175517679580488" "3" "0.103177056853160" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "14" "3.15415256619282e-05" "3" "0.0115278360723461" "sorbitol degradation" "AraCyc" "14" "0.0245591954369199" "3" "0.115338265932956" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "1.66243721789765e-13" "2" "0.000486538161341524" "translation" "FunCat" "14" "0.00349274228324513" "2" "0.206064655099675" "galactose degradation I" "AraCyc" "13" "1.34814062589503e-08" "3" "0.000800424020118985" "glutamate degradation I" "AraCyc" "13" "3.15941628264021e-05" "2" "0.0161356403729488" "lactose degradation IV" "AraCyc" "13" "1.34814062589503e-08" "3" "0.000800424020118985" "detoxification" "FunCat" "13" "0" "3" "0" "transported compounds (substrates)" "FunCat" "13" "0" "3" "0" "Lysine degradation" "KEGG" "13" "0.0212166168436412" "3" "0.0707587651992632" "Chloroplastic protein turnover" "BioPath" "12" "0.00600357891198455" "3" "0.0142567683396869" "ClpP protease complex " "BioPath" "12" "2.65360341773347e-05" "3" "0.00444474248448653" "Plastoquinone biosynthesis" "BioPath" "12" "0" "2" "0" "ATP-dependent proteolysis" "TAIR-GO" "12" "0.000268605084134137" "3" "0.0089056991852141" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "12" "1.75112868210484e-07" "3" "0.00122529667500496" "arginine degradation IX" "AraCyc" "12" "0.000858843053179993" "2" "0.0510615260789695" "formylTHF biosynthesis" "AraCyc" "12" "0.0305726909223312" "2" "0.137868905242656" "proline degradation II" "AraCyc" "12" "0.000597748184979191" "2" "0.0404102253266436" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "12" "0.0249407334519353" "2" "0.0924831720170198" "energy conversion and regeneration " "FunCat" "12" "4.104573196453e-13" "2" "0.000486538161341524" "1,2-Dichloroethane degradation" "KEGG" "12" "1.18948494948455e-10" "2" "0.00143940035779910" "Limonene and pinene degradation" "KEGG" "12" "2.07574807148638e-08" "2" "0.00644491357812759" "response to oxidative stress" "TAIR-GO" "11" "9.45668265284836e-07" "2" "0.00470294023255102" "superpathway of serine and glycine biosynthesis II" "AraCyc" "11" "0.0326268894856271" "2" "0.211580161194949" "electron / hydrogen transport " "FunCat" "11" "3.91780116948117e-05" "2" "0.00812574001922978" "MEP (methylerythritol P) pathway, plastids" "LitPath" "11" "0.00153383553525982" "2" "0.0133284921019256" "Cytochrome b6/f complex" "BioPath" "10" "0.0198144647214862" "1" "0.172615225514621" "Oxygen-evolving enhancer protein" "BioPath" "10" "0.000338113453132639" "1" "0.0598748933540043" "photosystem I subunit precursor" "BioPath" "10" "1.95219340308614e-05" "1" "0.0598748933540043" "Tocopherol biosynthesis" "BioPath" "10" "0.00983371580831814" "1" "0.0598748933540043" "Transcriptional regulators (chloroplast)" "BioPath" "10" "7.52931414037998e-07" "1" "0.0071050908248858" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "0.000734794212223655" "1" "0.0560356191452621" "biotin binding" "TAIR-GO" "10" "1.741729631509e-07" "1" "0.00660537995734545" "cell communication" "TAIR-GO" "10" "0" "1" "0" "chlorophyll catabolism" "TAIR-GO" "10" "2.49226649869155e-05" "1" "0.0187517339227650" "chloroplast ATP synthase complex" "TAIR-GO" "10" "1.741729631509e-07" "1" "0.00660537995734545" "chloroplast organization and biogenesis" "TAIR-GO" "10" "1.15405429705019e-05" "1" "0.0796308239570293" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "0.000220306661002364" "1" "0.0355025475801777" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "2.49226649869155e-05" "1" "0.0187517339227650" "gibberellic acid mediated signaling" "TAIR-GO" "10" "0.0033598651538024" "1" "0.0560356191452621" "glutathione biosynthesis" "TAIR-GO" "10" "1.741729631509e-07" "1" "0.00660537995734545" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "glycine catabolism" "TAIR-GO" "10" "0" "1" "0" "hypersensitive response" "TAIR-GO" "10" "0.00462597082573896" "1" "0.0796308239570293" "methionine biosynthesis from L-homoserine via cystathione" "TAIR-GO" "10" "0" "1" "0" "methylation-dependent chromatin silencing" "TAIR-GO" "10" "0" "1" "0" "phytochromobilin biosynthesis" "TAIR-GO" "10" "2.49226649869155e-05" "1" "0.0187517339227650" "plastid organization and biogenesis" "TAIR-GO" "10" "4.89212227617487e-06" "1" "0.0355025475801777" "plastoquinone biosynthesis" "TAIR-GO" "10" "1.741729631509e-07" "1" "0.00660537995734545" "positive regulation of transcription" "TAIR-GO" "10" "1.71307643160293e-05" "1" "0.0187517339227650" "posttranscriptional gene silencing" "TAIR-GO" "10" "0" "1" "0" "protein binding" "TAIR-GO" "10" "6.90958778986234e-05" "1" "0.0560356191452621" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "proton transport" "TAIR-GO" "10" "0.000734794212223655" "1" "0.0560356191452621" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to toxin" "TAIR-GO" "10" "0" "1" "0" "vitamin E biosynthesis" "TAIR-GO" "10" "0.000466755420330992" "1" "0.0355025475801777" "xenobiotic catabolism" "TAIR-GO" "10" "0" "1" "0" "(deoxy)ribose phosphate degradation" "AraCyc" "10" "0.00812582583067362" "2" "0.0404102253266436" "ammonia assimilation cycle" "AraCyc" "10" "0.0346615499490390" "1" "0.134926178442307" "ascorbate biosynthesis" "AraCyc" "10" "0.000941196304123893" "1" "0.134926178442307" "flavonol biosynthesis" "AraCyc" "10" "0.0452336873293397" "1" "0.432277540226011" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "0.00812582583067362" "1" "0.242653917505955" "glutamine biosynthesis I" "AraCyc" "10" "0.0151449554998494" "1" "0.086561170838067" "glutathione biosynthesis" "AraCyc" "10" "1.40715761071317e-07" "1" "0.0052578234355011" "methionine degradation I" "AraCyc" "10" "0.0151449554998494" "1" "0.160903065087331" "peptidoglycan biosynthesis" "AraCyc" "10" "0.000104805997451400" "1" "0.110036347659773" "plastoquinone biosynthesis" "AraCyc" "10" "9.44888398893074e-06" "1" "0.0285934789980591" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "vitamin E biosynthesis" "AraCyc" "10" "0.00927238581876867" "1" "0.086561170838067" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "10" "2.94482294597628e-07" "1" "0.0176549544283518" "chloroplast transport " "FunCat" "10" "0.0119369591702311" "1" "0.183829028109837" "degradation of lipids, fatty acids and isoprenoids" "FunCat" "10" "0" "1" "0" "detoxification by modification" "FunCat" "10" "6.6402279248305e-08" "1" "0.0176549544283518" "glyoxylate cycle" "FunCat" "10" "2.94482294597628e-07" "1" "0.0176549544283518" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "regulation of nucleotide metabolism" "FunCat" "10" "0" "2" "0" "Tetracycline biosynthesis" "KEGG" "10" "0.0002000741563144" "1" "0.0286421503881381" "chlorophyll catabolism" "LitPath" "10" "1.96711467389325e-06" "1" "0.0102768011792043" "diterpene biosynthesis" "LitPath" "10" "1.12051837204134e-08" "1" "0.00356241392643181" "phytochromobilin biosynthesis" "LitPath" "10" "0.00334913842811388" "1" "0.0616046114309406" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "abscisic acid mediated signaling" "TAIR-GO" "9" "0.000603095322430509" "1" "0.0355025475801777" "DNA methylation" "TAIR-GO" "9" "0" "1" "0" "flower development" "TAIR-GO" "9" "0.0027559814152781" "1" "0.0560356191452621" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "induced systemic resistance, jasmonic acid mediated signaling pathway" "TAIR-GO" "9" "0" "1" "0" "jasmonic acid and ethylene-dependent systemic resistance" "TAIR-GO" "9" "5.71139472767855e-07" "1" "0.00660537995734545" "jasmonic acid mediated signaling pathway" "TAIR-GO" "9" "0" "1" "0" "negative regulation of signal transduction" "TAIR-GO" "9" "0" "1" "0" "negative regulation of transcription" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "2.41179357420225e-05" "1" "0.0187517339227650" "nuclear heterochromatin" "TAIR-GO" "9" "0" "1" "0" "nuclear ubiquitin ligase complex" "TAIR-GO" "9" "0" "1" "0" "phosphoinositide-mediated signaling" "TAIR-GO" "9" "0" "1" "0" "photomorphogenesis" "TAIR-GO" "9" "5.71139472767855e-07" "1" "0.0187517339227650" "pollen germination" "TAIR-GO" "9" "5.29156925402453e-05" "1" "0.0187517339227650" "pollen tube growth" "TAIR-GO" "9" "9.93226002694178e-06" "1" "0.0355025475801777" "protein amino acid adenylylation" "TAIR-GO" "9" "0" "1" "0" "putrescine biosynthesis" "TAIR-GO" "9" "1.23092455878546e-07" "1" "0.00660537995734545" "red, far-red light phototransduction" "TAIR-GO" "9" "0" "1" "0" "response to abiotic stimulus" "TAIR-GO" "9" "5.00971280374704e-08" "1" "0.00660537995734545" "response to cold" "TAIR-GO" "9" "0.0172740948439121" "1" "0.105659095877133" "response to jasmonic acid stimulus" "TAIR-GO" "9" "0.0195119954665499" "1" "0.105659095877133" "response to pathogenic bacteria" "TAIR-GO" "9" "0.00186338546473256" "1" "0.0560356191452621" "RNA interference, production of siRNA" "TAIR-GO" "9" "0" "1" "0" "seed germination" "TAIR-GO" "9" "2.51410085381834e-11" "1" "0" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "sulfur metabolism" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "9.15710116593919e-07" "1" "0.0150146363554012" "arginine degradation III" "AraCyc" "9" "0.0215677360620353" "1" "0.134926178442307" "serine biosynthesis" "AraCyc" "9" "0.000653040000107626" "2" "0.0106509046309386" "oxidation of fatty acids " "FunCat" "9" "4.24212619347487e-10" "1" "0.0062093435836783" "stress response" "FunCat" "9" "0" "1" "0" "1- and 2-Methylnaphthalene degradation" "KEGG" "9" "0.0247648279963090" "1" "0.215304664965640" "Taurine and hypotaurine metabolism" "KEGG" "9" "0.000316826615209350" "1" "0.0454669591837947" "Golgi organization and biogenesis" "TAIR-GO" "8" "0" "2" "0" "nonphotochemical quenching" "TAIR-GO" "8" "6.78797294007874e-06" "1" "0.00660537995734545" "photosynthesis light harvesting in photosystem I" "TAIR-GO" "8" "0.0215905637514471" "1" "0.105659095877133" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "photosystem II" "TAIR-GO" "8" "0.00311312436020502" "1" "0.0560356191452621" "photosystem II antenna complex" "TAIR-GO" "8" "1.99553021867138e-05" "1" "0.0187517339227650" "proline biosynthesis I" "AraCyc" "8" "0.000653689657506524" "2" "0.0161356403729488" "ribose degradation" "AraCyc" "8" "0.00399734790205383" "2" "0.0510615260789695" "accessory proteins of photosynthetic electron transport " "FunCat" "8" "7.82269335239217e-08" "1" "0.0062093435836783" "aminoacyl-tRNA-synthetases" "FunCat" "8" "0.0367548358030389" "3" "0.048055194648094" "Vitamin B6 metabolism" "KEGG" "8" "0.00432922419125173" "2" "0.0106764011579549" "DNA-directed RNA polymerase II, holoenzyme" "TAIR-GO" "7" "0" "1" "0" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "L-serine biosynthesis" "TAIR-GO" "7" "2.26097508555891e-05" "1" "0.00660537995734545" "response to water deprivation" "TAIR-GO" "7" "0" "2" "0" "phosphoglycerate dehydrogenase, cysteine biosynthesis II" "AraCyc" "7" "3.67173176810274e-07" "1" "0.0052578234355011" "phosphoglycerate dehydrogenase, serine biosynthesis" "AraCyc" "7" "3.67173176810274e-07" "1" "0.0052578234355011" "rRNA synthesis " "FunCat" "7" "4.23737413789235e-06" "1" "0.0062093435836783" "tRNA synthesis " "FunCat" "7" "0.0104060050777739" "1" "0.100086161395169"