"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"360"	"46"	""	""
"photosynthesis"	"FunCat"	"170"	"29"	""	""
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"145"	"17"	""	""
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"139"	"16"	""	""
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"136"	"16"	""	""
"chlorophyll biosynthesis"	"TAIR-GO"	"135"	"14"	""	""
"chlorophyll biosynthesis"	"AraCyc"	"134"	"15"	""	""
"Carotenoid and abscisic acid metabolism"	"LitPath"	"121"	"16"	""	""
"chlorophyll biosynthesis"	"LitPath"	"119"	"12"	""	""
"Protein export"	"KEGG"	"113"	"15"	""	""
"carotenoid biosynthesis"	"AraCyc"	"112"	"13"	""	""
"photorespiration"	"AraCyc"	"106"	"18"	""	""
"Carotenoid biosynthesis"	"BioPath"	"104"	"12"	""	""
"carotenid biosynthesis"	"LitPath"	"104"	"12"	""	""
"photorespiration"	"TAIR-GO"	"88"	"12"	""	""
"carotenoid biosynthesis"	"TAIR-GO"	"76"	"9"	""	""
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"74"	"8"	""	""
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"67"	"7"	""	""
"photosynthesis"	"TAIR-GO"	"56"	"11"	""	""
"brassinosteroid biosynthesis"	"BioPath"	"50"	"5"	""	""
"chlorophyll catabolism"	"TAIR-GO"	"50"	"5"	""	""
"chlorophyll catabolism"	"LitPath"	"50"	"5"	""	""
"ORGAN DATA SET"	"quantDE"	"4.502382"	"maxDE"	"4.8613046"	"ORGAN DATA SET"
"Photosystems "	"BioPath"	"313"	"2.39428527419816e-83"	"49"	"8.09479318468064e-18"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"207"	"1.59884728014062e-27"	"27"	"1.46673429718182e-06"
"C-compound and carbohydrate metabolism"	"FunCat"	"156"	"1.65045693652945e-05"	"27"	"0.0386129418319305"
"biogenesis of chloroplast"	"FunCat"	"147"	"1.82407763101115e-56"	"23"	"2.15565727701933e-12"
"photosynthesis"	"FunCat"	"138"	"1.47958328654804e-74"	"22"	"3.15994267376731e-15"
"additional photosystem II components"	"BioPath"	"132"	"2.68447016586307e-38"	"20"	"2.03759929244736e-09"
"Photosystem I"	"BioPath"	"129"	"1.16189072093506e-22"	"21"	"1.58257523852923e-06"
"Photosynthesis"	"KEGG"	"129"	"1.77450897576240e-105"	"23"	"2.7117690106065e-23"
"Carbon fixation"	"KEGG"	"102"	"7.22517454229556e-36"	"15"	"6.69614040285841e-07"
"glycolysis and gluconeogenesis"	"FunCat"	"95"	"2.4006251223655e-08"	"15"	"0.0142404654267921"
"Chlorophyll a/b binding proteins"	"BioPath"	"90"	"8.9955908034087e-36"	"11"	"6.57821479075002e-07"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"85"	"6.80349897865545e-12"	"11"	"0.000769194649209764"
"transport "	"FunCat"	"81"	"0"	"14"	"0"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"79"	"6.97900930941587e-18"	"10"	"0.000197299726686300"
"photosystem I"	"TAIR-GO"	"77"	"0"	"10"	"0"
"Folding, Sorting and Degradation"	"KEGG"	"74"	"1.08962238796418e-08"	"11"	"0.0233519908579121"
"Photosystem II"	"BioPath"	"67"	"1.32824963312047e-05"	"9"	"0.0305257005248304"
"Calvin cycle"	"AraCyc"	"66"	"6.39278197505275e-24"	"12"	"1.09908365262257e-05"
"chlorophyll biosynthesis"	"TAIR-GO"	"65"	"3.48816303236274e-26"	"7"	"4.89956320059552e-05"
"chlorophyll biosynthesis"	"AraCyc"	"64"	"1.36494644717984e-12"	"8"	"0.0356790491910406"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"63"	"1.25071003778231e-23"	"9"	"1.01937752464654e-05"
"photosystem II"	"TAIR-GO"	"61"	"0"	"8"	"0"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"58"	"1.37165777607038e-23"	"7"	"7.25035828845526e-05"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"53"	"6.77709438522872e-18"	"6"	"0.000754422023072746"
"Protein export"	"KEGG"	"53"	"6.06140211600748e-27"	"7"	"0.000196766731709282"
"Carotenoid biosynthesis"	"BioPath"	"52"	"4.50473162920233e-20"	"6"	"0.000159437960283470"
"carotenoid biosynthesis"	"AraCyc"	"52"	"3.40574940585692e-30"	"6"	"3.71198847209364e-06"
"Biosynthesis of steroids"	"KEGG"	"52"	"2.54585556484821e-07"	"6"	"0.0173885271725110"
"carotenid biosynthesis"	"LitPath"	"52"	"9.74126541301305e-28"	"6"	"2.19487759532197e-05"
"chlorophyll biosynthesis"	"LitPath"	"49"	"4.20220194565619e-26"	"5"	"6.4114650649082e-05"
"chlorophyll binding"	"TAIR-GO"	"48"	"6.56636934579393e-19"	"6"	"0.000248765383291653"
"photorespiration"	"AraCyc"	"46"	"1.41115958924380e-16"	"10"	"9.52728710444694e-05"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"46"	"1.86210560146111e-05"	"7"	"0.232060711129481"
"gluconeogenesis"	"AraCyc"	"44"	"2.37728203268565e-06"	"7"	"0.0402884989065163"
"serine-isocitrate lyase pathway"	"AraCyc"	"44"	"4.92165122183025e-06"	"7"	"0.0402884989065163"
"Pentose phosphate pathway"	"KEGG"	"44"	"4.41130949997424e-12"	"7"	"0.00235794027125316"
"acetate fermentation"	"AraCyc"	"42"	"0.00182804699860753"	"8"	"0.140614390348533"
"fructose degradation (anaerobic)"	"AraCyc"	"42"	"0.000551855279856238"	"8"	"0.0986468826115456"
"glycolysis IV"	"AraCyc"	"42"	"0.00064710193343666"	"8"	"0.106383354588252"
"sorbitol fermentation"	"AraCyc"	"42"	"0.00209861237084414"	"8"	"0.122852002471045"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"41"	"1.42598165752037e-12"	"6"	"0.0213847951039542"
"Fructose and mannose metabolism"	"KEGG"	"40"	"1.68032841428453e-06"	"7"	"0.00498228923211558"
"Chloroplastic protein turnover"	"BioPath"	"38"	"3.69551586885976e-18"	"8"	"2.10355974075221e-06"
"mRNA processing in chloroplast"	"BioPath"	"38"	"6.02898643875751e-19"	"7"	"3.15932876380029e-05"
"transport facilitation"	"FunCat"	"38"	"0"	"7"	"0"
"Glycolysis / Gluconeogenesis"	"KEGG"	"38"	"0.0425431213008007"	"7"	"0.0839223924738688"
"protein biosynthesis"	"TAIR-GO"	"36"	"0"	"6"	"0"
"glycine biosynthesis I"	"AraCyc"	"36"	"2.95099987852375e-08"	"8"	"0.0110201241740969"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"36"	"1.10348149480866e-17"	"8"	"5.12392395068991e-05"
"Transcription (chloroplast)"	"BioPath"	"34"	"2.44444553879772e-14"	"4"	"0.000735968102760836"
"transcription initiation"	"TAIR-GO"	"34"	"3.33156422839895e-16"	"4"	"0.000862398861607012"
"energy"	"FunCat"	"34"	"0"	"4"	"0"
"Ascorbate and aldarate metabolism"	"KEGG"	"34"	"7.39110682715083e-09"	"5"	"0.00278696158662557"
"photosystem I reaction center"	"BioPath"	"32"	"1.45993485339057e-18"	"7"	"8.36287797599572e-07"
"acetyl-CoA assimilation"	"AraCyc"	"32"	"0.000150691576742533"	"5"	"0.0572815393574974"
"TCA cycle variation IV"	"AraCyc"	"32"	"0.00637689291316874"	"5"	"0.20104940522629"
"TCA cycle variation VIII"	"AraCyc"	"32"	"0.0288715495092153"	"5"	"0.26028321996785"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"30"	"5.03768055273123e-12"	"3"	"0.00395894998346580"
"respiration"	"FunCat"	"30"	"4.85989913957102e-09"	"4"	"0.00388878653372759"
"Fluorene degradation"	"KEGG"	"30"	"2.81056871362753e-12"	"4"	"0.00129426147847722"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"30"	"1.77845913275100e-10"	"4"	"0.00241824442469479"
"Glucosinolate Metabolism"	"LitPath"	"30"	"0.0100337275884003"	"3"	"0.122211541628402"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"30"	"0.000524842044087298"	"4"	"0.0456886794504312"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"30"	"1.79473617884809e-13"	"4"	"0.000920998888895705"
"fatty acid metabolism"	"TAIR-GO"	"29"	"0.0491891391226962"	"4"	"0.158131235780370"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"29"	"3.20364381335617e-10"	"4"	"0.00170502713295908"
"Oxygen-evolving enhancer protein"	"BioPath"	"28"	"2.6068437114006e-19"	"4"	"4.43705673479758e-05"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"28"	"5.98590475334855e-08"	"3"	"0.00825625915773908"
"ATP-dependent proteolysis"	"TAIR-GO"	"28"	"8.32341421161794e-15"	"7"	"3.69388720652796e-06"
"photorespiration"	"TAIR-GO"	"28"	"2.38811363328545e-22"	"4"	"2.07825933602028e-05"
"formaldehyde assimilation I (serine pathway)"	"AraCyc"	"28"	"0.000470596977667308"	"5"	"0.0650503716915334"
"glyoxylate cycle"	"AraCyc"	"28"	"8.73578151222249e-05"	"4"	"0.0462397684381397"
"Nitrogen metabolism"	"KEGG"	"28"	"0.00753903685481736"	"5"	"0.0100670764413919"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"27"	"5.56902509850701e-19"	"3"	"0.000180947112856166"
"ascorbic acid biosynthesis"	"BioPath"	"26"	"0.0493246969455006"	"4"	"0.144170498510573"
"Early light-inducible proteins"	"BioPath"	"26"	"2.56701167411491e-10"	"4"	"0.000735968102760836"
"light harvesting complex"	"BioPath"	"26"	"7.26598219504647e-11"	"3"	"0.00395894998346580"
"photosystem II type I  chlorophyll a /b binding protein"	"BioPath"	"26"	"2.03737828681487e-15"	"3"	"0.000330966936161802"
"aerobic respiration"	"FunCat"	"26"	"1.00906692509123e-06"	"3"	"0.0228176129943056"
"ClpP protease complex "	"BioPath"	"24"	"4.12688858796529e-13"	"6"	"2.22535133180327e-05"
"photosystem I subunit precursor"	"BioPath"	"24"	"8.64631708724818e-20"	"4"	"4.43705673479758e-05"
"Translation (chloroplast)"	"BioPath"	"24"	"2.74766988276495e-10"	"5"	"3.67878344455285e-05"
"photosynthesis"	"TAIR-GO"	"24"	"0.0225571507777326"	"4"	"0.0740193618552664"
"wax biosynthesis"	"TAIR-GO"	"24"	"6.6663634177569e-10"	"3"	"0.004748423181378"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"24"	"9.30190644011156e-15"	"3"	"0.00077187224515856"
"mannitol degradation"	"AraCyc"	"24"	"4.09111191726566e-06"	"5"	"0.0188159149899420"
"sorbitol degradation"	"AraCyc"	"24"	"8.88084192238509e-06"	"5"	"0.0227004900277825"
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	"24"	"0.002820298658233"	"3"	"0.0700130789017129"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"24"	"0.000209022897411007"	"4"	"0.0225374891432780"
"lactose degradation IV"	"AraCyc"	"23"	"6.00618835073594e-21"	"6"	"3.91668081668261e-08"
"photosynthetic electron transport"	"TAIR-GO"	"22"	"4.96109219133611e-11"	"3"	"0.00223920024848304"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"22"	"2.46627433178774e-10"	"5"	"0.000451981195693353"
"pentose-phosphate pathway "	"FunCat"	"22"	"0.000339569156932235"	"3"	"0.0700130789017129"
"degradation "	"FunCat"	"21"	"0.000754460457785989"	"4"	"0.0429079499646315"
"protein degradation "	"FunCat"	"21"	"2.83858572020815e-06"	"4"	"0.0117125106966256"
"Protein folding and associated processing"	"KEGG"	"21"	"7.46007586400954e-05"	"4"	"0.0166080988508655"
"ATP synthase components"	"BioPath"	"20"	"0.00138926992992186"	"3"	"0.0354971436024093"
"Transcriptional regulators (chloroplast)"	"BioPath"	"20"	"0"	"2"	"0"
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	"20"	"2.08187326476887e-14"	"5"	"1.50175073011798e-05"
"cuticle biosynthesis"	"TAIR-GO"	"20"	"4.51984785490905e-05"	"3"	"0.041898960870546"
"cytochrome b6f complex"	"TAIR-GO"	"20"	"1.76904166368113e-09"	"2"	"0.0239672944063389"
"long-chain fatty acid metabolism"	"TAIR-GO"	"20"	"0.0184388010815549"	"3"	"0.127123377418108"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"0.000249062788877625"	"3"	"0.041898960870546"
"photosynthetic water oxidation"	"TAIR-GO"	"20"	"0"	"2"	"0"
"positive regulation of transcription"	"TAIR-GO"	"20"	"6.69353358112168e-14"	"2"	"0.00156927584600923"
"regulation of transcription"	"TAIR-GO"	"20"	"0"	"2"	"0"
"very-long-chain fatty acid metabolism"	"TAIR-GO"	"20"	"0.00162551250072999"	"3"	"0.0875252252445401"
"ammonia assimilation cycle"	"AraCyc"	"20"	"1.72039634318358e-06"	"2"	"0.0381868393626345"
"glutamine biosynthesis I"	"AraCyc"	"20"	"1.76173985102798e-07"	"2"	"0.0181707166248622"
"nitrate assimilation pathway"	"AraCyc"	"20"	"5.61481636092222e-05"	"2"	"0.0510741973031359"
"phenylalanine degradation I"	"AraCyc"	"20"	"0.0237099606223956"	"4"	"0.0832966639238643"
"nitrogen and sulfur metabolism"	"FunCat"	"20"	"0.0468439246603494"	"2"	"0.190973438282100"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"20"	"0.000708513135535487"	"4"	"0.00966103449105864"
"carotene biosynthesis"	"TAIR-GO"	"18"	"6.80999844756502e-12"	"2"	"0.00156927584600923"
"nonphotochemical quenching"	"TAIR-GO"	"18"	"0"	"2"	"0"
"porphyrin biosynthesis"	"TAIR-GO"	"18"	"0.00948497640974866"	"3"	"0.0551444337283096"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"18"	"0.00694500121549145"	"3"	"0.138790183148598"
"xanthophyll cycle"	"AraCyc"	"18"	"0"	"2"	"0"
"electron transport and membrane-associated energy conservation "	"FunCat"	"18"	"6.14872924722055e-09"	"2"	"0.0258765610085578"
"transported compounds (substrates)"	"FunCat"	"18"	"0"	"4"	"0"
"photoinhibition"	"TAIR-GO"	"17"	"3.90020527838666e-11"	"2"	"0.00156927584600923"
"photosystem II assembly"	"TAIR-GO"	"17"	"2.26291254903910e-14"	"2"	"0.00156927584600923"
"photosystem II stabilization"	"TAIR-GO"	"17"	"0"	"2"	"0"
"glycosylglyceride desaturation pathway"	"AraCyc"	"17"	"1.57817134884408e-09"	"2"	"0.00254061218032082"
"Ferredoxin"	"BioPath"	"16"	"0.000144780279312487"	"4"	"0.0034937099695424"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"16"	"0.0376137289879375"	"3"	"0.041898960870546"
"carotenoid biosynthesis"	"TAIR-GO"	"16"	"0.00226903279798042"	"2"	"0.056229648019406"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"16"	"0"	"2"	"0"
"response to high light intensity"	"TAIR-GO"	"16"	"2.19419770961812e-10"	"2"	"0.00156927584600923"
"epicuticular wax biosynthesis"	"AraCyc"	"16"	"3.23726051469099e-13"	"2"	"0.00067974536307115"
"TCA cycle variation II"	"AraCyc"	"16"	"0.00262916205209980"	"3"	"0.0562639792032931"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"16"	"0"	"2"	"0"
"chorismate biosynthesis"	"LitPath"	"16"	"0.0242623919804231"	"3"	"0.0467543919067731"
"galactose degradation I"	"AraCyc"	"15"	"5.74397684874531e-10"	"4"	"9.37176004727699e-05"
"Delta-pH pathway"	"BioPath"	"14"	"1.91016004387827e-07"	"2"	"0.00246272869070959"
"Sec (secretory) pathway"	"BioPath"	"14"	"4.18625131815412e-09"	"2"	"0.00885801395435294"
"photosynthesis light harvesting"	"TAIR-GO"	"14"	"0.00282637363697168"	"2"	"0.056229648019406"
"photosynthesis light harvesting in photosystem I"	"TAIR-GO"	"14"	"0.000329916353280543"	"2"	"0.0383814478250597"
"photosystem II antenna complex"	"TAIR-GO"	"14"	"1.24243630715121e-10"	"2"	"0.00156927584600923"
"response to water deprivation"	"TAIR-GO"	"14"	"0"	"2"	"0"
"ascorbate biosynthesis"	"AraCyc"	"14"	"9.15776715710393e-06"	"2"	"0.0381868393626345"
"ascorbate glutathione cycle"	"AraCyc"	"14"	"0.0401861739105379"	"3"	"0.0461199678555067"
"biosynthesis of glycosides"	"FunCat"	"14"	"1.54532670677737e-13"	"2"	"0.000434864647572006"
"metabolismn of primary metabolic sugars derivatives "	"FunCat"	"14"	"1.54532670677737e-13"	"2"	"0.000434864647572006"
"transport routes "	"FunCat"	"13"	"0.0260231805112488"	"3"	"0.0427547946567671"
"psbP family of thylakoid proteins"	"BioPath"	"12"	"1.17450617182463e-05"	"4"	"0.000236553625392759"
"plastid large ribosomal subunit"	"TAIR-GO"	"12"	"0"	"2"	"0"
"plastid organization and biogenesis"	"TAIR-GO"	"12"	"2.32542938981334e-06"	"2"	"0.00573426204546841"
"RNA processing"	"TAIR-GO"	"12"	"0"	"2"	"0"
"4-hydroxyproline degradation"	"AraCyc"	"12"	"0.00272344288396359"	"2"	"0.0657718682659095"
"cyanate degradation"	"AraCyc"	"12"	"8.58256711157578e-06"	"2"	"0.100104371228148"
"cysteine biosynthesis II"	"AraCyc"	"12"	"0.0439631087973416"	"5"	"0.0124587393426083"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"12"	"0.00272344288396359"	"2"	"0.100104371228148"
"peptidoglycan biosynthesis"	"AraCyc"	"12"	"1.24440575935309e-05"	"2"	"0.0272009723828179"
"serine biosynthesis"	"AraCyc"	"12"	"1.77525861438613e-05"	"5"	"2.92426634501046e-06"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"12"	"0.000391274097493751"	"2"	"0.0181707166248622"
"accessory proteins of photosynthetic electron transport "	"FunCat"	"12"	"0"	"2"	"0"
"C-compound and carbohydrate utilization "	"FunCat"	"12"	"3.85006737805896e-13"	"2"	"0"
"electron / hydrogen transport "	"FunCat"	"12"	"6.45358620787405e-06"	"2"	"0.00731260623026884"
"nucleotide metabolism"	"FunCat"	"12"	"0"	"2"	"0"
"translation"	"FunCat"	"12"	"0.0197282515123847"	"2"	"0.190973438282100"
"Flavonoid biosynthesis"	"KEGG"	"11"	"0.0284265367026757"	"2"	"0.0651161748372774"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"0.00346631370974603"	"1"	"0.0499168201848028"
"FtsH protease (many homologues / subcellular localization ambiguous)"	"BioPath"	"10"	"0"	"1"	"0"
"Other cell wall metabolism related enzymes"	"BioPath"	"10"	"4.68263087874543e-05"	"1"	"0.0182807591887406"
"Plastocyanin"	"BioPath"	"10"	"4.68263087874543e-05"	"1"	"0.0182807591887406"
"Regulatory enzymes"	"BioPath"	"10"	"0.00346631370974603"	"1"	"0.0499168201848028"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"10"	"0.00896377741939634"	"1"	"0.106811635787944"
"cell communication"	"TAIR-GO"	"10"	"0"	"1"	"0"
"cell differentiation"	"TAIR-GO"	"10"	"1.75947471620353e-07"	"2"	"0.00156927584600923"
"chalcone biosynthesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"0.000442840122809103"	"1"	"0.0375312712245995"
"chloroplast ATP synthase complex"	"TAIR-GO"	"10"	"4.26940811688503e-06"	"1"	"0.0135566076388727"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"0.000442840122809103"	"1"	"0.0375312712245995"
"cytochrome b6f complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"extrinsic to photosynthetic water oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose metabolism"	"TAIR-GO"	"10"	"0.00896377741939634"	"1"	"0.106811635787944"
"glucosinolate catabolism"	"TAIR-GO"	"10"	"2.15523245205424e-06"	"1"	"0.0135566076388727"
"isoprenoid biosynthesis"	"TAIR-GO"	"10"	"0.0321377429625014"	"1"	"0.106811635787944"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"0.00896377741939634"	"1"	"0.106811635787944"
"photosynthetic electron transport in cytochrome b6/f"	"TAIR-GO"	"10"	"1.84691085009886e-08"	"1"	"0.0135566076388727"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"10"	"0.000612700250304346"	"1"	"0.0693282804037307"
"protein binding"	"TAIR-GO"	"10"	"0.00111631376188931"	"1"	"0.106811635787944"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"proton transport"	"TAIR-GO"	"10"	"0.00896377741939634"	"1"	"0.106811635787944"
"response to gravity"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to stress"	"TAIR-GO"	"10"	"0.00491312183735778"	"1"	"0.0693282804037307"
"RNA binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"brassinosteroid biosynthesis II"	"AraCyc"	"10"	"0.0174476901218792"	"1"	"0.286251332635603"
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	"10"	"0.00747903312921035"	"1"	"0.0647865838923433"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"10"	"0.00113970767354282"	"1"	"0.0412466419791139"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"10"	"0.0134036128887606"	"3"	"0.0223508896891857"
"phospholipid desaturation pathway"	"AraCyc"	"10"	"0.00747903312921035"	"1"	"0.0647865838923433"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"10"	"5.29895943820044e-06"	"1"	"0.0647865838923433"
"starch biosynthesis"	"AraCyc"	"10"	"0"	"1"	"0"
"thiamine biosynthesis"	"AraCyc"	"10"	"6.69126961754738e-05"	"1"	"0.0916290828518244"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"10"	"0.00196723303332302"	"1"	"0.095798738805944"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"10"	"0.000225284708751618"	"1"	"0.0448711436160200"
"Androgen and estrogen metabolism"	"KEGG"	"10"	"0.000342862064589191"	"1"	"0.0604039355104405"
"Benzoate degradation via hydroxylation"	"KEGG"	"10"	"0.0203057527612320"	"1"	"0.115215923911542"
"Peptidoglycan biosynthesis"	"KEGG"	"10"	"0.000143742764883807"	"1"	"0.0311168238389078"
"abscisic acid biosynthesis"	"LitPath"	"10"	"0.0169289608554027"	"2"	"0.0402469644333016"
"chlorophyll catabolism"	"LitPath"	"10"	"0.000186752950014978"	"1"	"0.0293675832281419"
"phytol biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"polyprenyl diphosphate biosynthesis"	"LitPath"	"10"	"0.00182405118686031"	"1"	"0.195520278733898"
"calcium ion transport"	"TAIR-GO"	"9"	"1.05435162670478e-05"	"1"	"0.0135566076388727"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"histidine biosynthesis"	"TAIR-GO"	"9"	"0.000356065002182493"	"1"	"0.0375312712245995"
"myo-inositol biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine degradation III"	"AraCyc"	"9"	"2.95357722592560e-06"	"1"	"0.0218936270797174"
"Other ion-coupled transporters"	"KEGG"	"9"	"0.00814013008955802"	"1"	"0.156533322132562"
"biosynthesis of extracellular lipids"	"LitPath"	"9"	"0"	"1"	"0"
"photosystem II type II  chlorophyll a /b binding protein"	"BioPath"	"8"	"0.0463857500064778"	"1"	"0.0909756264152526"
"Tic apparatus"	"BioPath"	"8"	"0.0463857500064778"	"2"	"0.0817495378131344"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"8"	"0.00170155963900985"	"1"	"0.0375312712245995"
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	"8"	"0"	"1"	"0"
"photosystem I antenna complex"	"TAIR-GO"	"8"	"0"	"1"	"0"
"response to osmotic stress"	"TAIR-GO"	"8"	"0.00232875093803223"	"1"	"0.0693282804037307"
"xanthophyll biosynthesis "	"TAIR-GO"	"8"	"0"	"1"	"0"
"accessory proteins of electron transport and membrane-associated energy conservation"	"FunCat"	"8"	"9.9417536829696e-06"	"1"	"0.0164175283117397"
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"8"	"0"	"1"	"0"
"One carbon pool by folate"	"KEGG"	"8"	"0.0303968024462376"	"2"	"0.0461587508637072"
"fatty acid desaturation"	"TAIR-GO"	"7"	"0.0069464421797261"	"1"	"0.0375312712245995"
"signal sequence binding"	"TAIR-GO"	"7"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"1.739187"	"maxDE"	"5.532927"	"STRESS DATA SET"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"44"	"8.93580067125255e-45"	"5"	"1.03439785120837e-07"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"44"	"2.66155811127912e-09"	"5"	"0.0072726347840713"
"Glucosinolate Metabolism"	"LitPath"	"40"	"2.16992636912793e-28"	"4"	"1.67784756742084e-05"
"Folding, Sorting and Degradation"	"KEGG"	"36"	"6.45970972939551e-17"	"5"	"0.000672077675070847"
"Protein export"	"KEGG"	"36"	"1.10305300081535e-38"	"5"	"3.1837040827888e-07"
"glucosinolate biosynthesis"	"TAIR-GO"	"30"	"5.68353796516324e-31"	"3"	"5.647125632185e-06"
"glucosinolate biosynthesis from homomethionine"	"AraCyc"	"30"	"1.3998817938889e-46"	"3"	"1.17028057143929e-07"
"Transcription (chloroplast)"	"BioPath"	"24"	"2.93897479441058e-24"	"3"	"5.96147736876596e-06"
"transcription initiation"	"TAIR-GO"	"24"	"4.53230836508334e-25"	"3"	"5.647125632185e-06"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"20"	"9.49079595816063e-06"	"2"	"0.0311020653651701"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"20"	"2.03148089767819e-19"	"2"	"0.000170632115771429"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"20"	"2.12278496252041e-17"	"2"	"0.000294135094573427"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"20"	"8.0974195710516e-26"	"2"	"2.05434451995661e-05"
"transport "	"FunCat"	"20"	"0"	"4"	"0"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"20"	"7.32946342382375e-06"	"2"	"0.02640714387356"
"Glycine, serine and threonine metabolism"	"KEGG"	"15"	"8.38866090964464e-09"	"2"	"0.00567485634164446"
"Delta-pH pathway"	"BioPath"	"14"	"1.49044801051768e-18"	"2"	"8.9272018571414e-06"
"Ascorbate and aldarate metabolism"	"KEGG"	"14"	"5.43238373991244e-09"	"2"	"0.00197659517381515"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"14"	"5.37207351044573e-05"	"2"	"0.080134551938966"
"ascorbic acid biosynthesis"	"BioPath"	"12"	"3.06505230703698e-05"	"2"	"0.0090599105006079"
"carbon monoxide dehydrogenase pathway"	"AraCyc"	"11"	"3.27381223568959e-10"	"3"	"0.000385627603348565"
"Carotenoid biosynthesis"	"BioPath"	"10"	"3.35673535555803e-05"	"1"	"0.0213196995884609"
"Early light-inducible proteins"	"BioPath"	"10"	"5.09123589806559e-08"	"2"	"0.000294135094573427"
"Flavonoid and anthocyanin metabolism"	"BioPath"	"10"	"0.0162875147335729"	"1"	"0.324524108699525"
"Regulatory enzymes"	"BioPath"	"10"	"1.19207009157265e-10"	"1"	"0.00129642809192042"
"Sec (secretory) pathway"	"BioPath"	"10"	"4.63967080731013e-13"	"1"	"0.00255768321072533"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"4.63967080731013e-13"	"1"	"0.000438094165211568"
"carotene biosynthesis"	"TAIR-GO"	"10"	"7.9071058348905e-12"	"1"	"0.00091653515770848"
"chlorophyll biosynthesis"	"TAIR-GO"	"10"	"0.000201972100256009"	"1"	"0.024576218314805"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"1.93367186045043e-11"	"1"	"0.00091653515770848"
"cytochrome b6f complex"	"TAIR-GO"	"10"	"1.19609647946168e-09"	"1"	"0.00443047784341673"
"cytochrome b6f complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"hypersensitive response"	"TAIR-GO"	"10"	"1.38618595326608e-08"	"1"	"0.00443047784341673"
"lipid metabolism"	"TAIR-GO"	"10"	"1.93367186045043e-11"	"1"	"0.00091653515770848"
"lipoic acid metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"phospholipid metabolism"	"TAIR-GO"	"10"	"7.241790879692e-14"	"1"	"0.000308978071904131"
"photosynthesis"	"TAIR-GO"	"10"	"0.000244879125739707"	"1"	"0.0480053299354435"
"photosynthesis, dark reaction"	"TAIR-GO"	"10"	"0"	"1"	"0"
"plastid organization and biogenesis"	"TAIR-GO"	"10"	"2.95934335959696e-12"	"1"	"0.00181252687021739"
"positive regulation of transcription"	"TAIR-GO"	"10"	"1.24904686934419e-11"	"1"	"0.00091653515770848"
"protein binding"	"TAIR-GO"	"10"	"6.45728278893801e-11"	"1"	"0.00298705811969309"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"regulation of transcription"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to UV"	"TAIR-GO"	"10"	"2.21063665352965e-05"	"1"	"0.0213015066401298"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"biosynthesis of proto- and siroheme"	"AraCyc"	"10"	"8.36578283887493e-05"	"1"	"0.0957158037282057"
"carotenoid biosynthesis"	"AraCyc"	"10"	"3.19864504816482e-08"	"1"	"0.00674206885506822"
"glucosinolate biosynthesis from phenylalanine"	"AraCyc"	"10"	"2.50041236175717e-12"	"1"	"0.00094420410867744"
"phospholipid biosynthesis II"	"AraCyc"	"10"	"5.44771678658126e-07"	"1"	"0.0313949903026823"
"triacylglycerol biosynthesis"	"AraCyc"	"10"	"5.69107555429907e-11"	"1"	"0.00232210756959599"
"electron transport and membrane-associated energy conservation "	"FunCat"	"10"	"1.08550409975324e-12"	"1"	"0.00351725811648934"
"energy"	"FunCat"	"10"	"3.32638985123385e-18"	"1"	"0.000304634529580239"
"mRNA synthesis "	"FunCat"	"10"	"4.46625437556091e-08"	"1"	"0.0305700395142745"
"RNA synthesis "	"FunCat"	"10"	"4.46625437556091e-08"	"1"	"0.0305700395142745"
"transcription"	"FunCat"	"10"	"8.98293353742849e-12"	"1"	"0.00861042000032144"
"transcriptional control"	"FunCat"	"10"	"1.94896140798499e-10"	"1"	"0.00632542164328936"
"Biosynthesis of steroids"	"KEGG"	"10"	"0.00695592380368182"	"1"	"0.0802676851782224"
"Fluorene degradation"	"KEGG"	"10"	"1.00903195024268e-07"	"1"	"0.00993387073067896"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"4.5051626418405e-07"	"1"	"0.0127011626066540"
"Glutathione metabolism"	"KEGG"	"10"	"0.000337469389194172"	"1"	"0.0684917197227076"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"6.78851547287156e-05"	"1"	"0.0307326853236980"
"RNA polymerase"	"KEGG"	"10"	"2.85968510961803e-05"	"1"	"0.062843253248861"
"Transcription"	"KEGG"	"10"	"0.00232175777191467"	"1"	"0.186836717607434"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"10"	"2.11959782878471e-07"	"1"	"0.0201352660590091"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"10"	"4.18623039521500e-07"	"1"	"0.0123117844359350"
"carotenid biosynthesis"	"LitPath"	"10"	"2.96084610176766e-05"	"1"	"0.0195410929762410"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"10"	"0.00226085949623519"	"1"	"0.0662974152313839"
"chlorophyll biosynthesis"	"LitPath"	"10"	"1.75095122243316e-05"	"1"	"0.0130972747988101"
"chlorophyll catabolism"	"LitPath"	"10"	"9.76555181305272e-11"	"1"	"0.00117200812818699"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"6.22762211835693e-07"	"1"	"0.00782346743922174"
"photorespiration"	"TAIR-GO"	"9"	"1.97039488172714e-09"	"1"	"0.00298705811969309"
"glycine biosynthesis I"	"AraCyc"	"9"	"2.12375656088728e-05"	"1"	"0.103746032579122"
"photorespiration"	"AraCyc"	"9"	"7.091744772078e-06"	"1"	"0.0692371701350605"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"9"	"6.95782165189039e-08"	"1"	"0.0313949903026823"
"Chlorophyll a/b binding proteins"	"BioPath"	"8"	"0.0199970954160111"	"1"	"0.059535733035827"
"light harvesting complex"	"BioPath"	"8"	"3.54993418495568e-06"	"1"	"0.00622227807706932"
"acetate fermentation"	"AraCyc"	"8"	"0.0118395702714594"	"2"	"0.0550734477995144"
"photosynthesis"	"FunCat"	"8"	"0.00181121084192602"	"2"	"0.00979502997402385"
"amylopectin biosynthesis"	"TAIR-GO"	"7"	"1.06312548308654e-09"	"1"	"0.00091653515770848"
"pectin biosynthesis"	"TAIR-GO"	"7"	"1.06312548308654e-09"	"1"	"0.00091653515770848"
"starch biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"starch degradation"	"AraCyc"	"7"	"1.40122590827409e-05"	"1"	"0.0151034634729240"
"HORMONE DATA SET"	"quantDE"	"0.8413686"	"maxDE"	"2.4250121"	"HORMONE DATA SET"
"C-compound and carbohydrate metabolism"	"FunCat"	"22"	"2.42951217719818e-06"	"4"	"0.027244858701426"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"18"	"7.15827315731826e-06"	"2"	"0.0503663403989425"
"Inositol phosphate metabolism"	"KEGG"	"17"	"4.10406701382274e-07"	"3"	"0.0152831759942976"
"glycolysis and gluconeogenesis"	"FunCat"	"14"	"4.9248289054894e-06"	"3"	"0.00688543068161047"
"Lipid signaling"	"AcylLipid"	"14"	"0.000142196685871318"	"3"	"0.0151090608609387"
"Basal transcription factors"	"KEGG"	"12"	"6.44231691691045e-10"	"2"	"0.0048758914659342"
"Streptomycin biosynthesis"	"KEGG"	"12"	"6.20919662886634e-12"	"2"	"0.000248133032989201"
"Transcription"	"KEGG"	"12"	"4.15934826345503e-05"	"2"	"0.040856967805703"
"Benzoate degradation via CoA ligation"	"KEGG"	"11"	"0.000639625759874371"	"2"	"0.0584628879760995"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"11"	"0.000179631354309222"	"2"	"0.0478096503823151"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"3.7800969345897e-05"	"1"	"0.0434230778671779"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"10"	"1.69947229265632e-09"	"1"	"0.00726751362387062"
"Phytic acid biosynthesis"	"BioPath"	"10"	"9.9898378290834e-09"	"3"	"6.61940030841555e-05"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"10"	"2.51071041685330e-12"	"1"	"0.00146047251459132"
"cell death"	"TAIR-GO"	"10"	"5.38040687394537e-15"	"1"	"0.000204243402280705"
"chlorophyll biosynthesis"	"TAIR-GO"	"10"	"5.7451481078279e-09"	"1"	"0.00299400941511736"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"2.02757985636221e-15"	"1"	"0.000204243402280705"
"microtubule cytoskeleton"	"TAIR-GO"	"10"	"0"	"1"	"0"
"programmed cell death"	"TAIR-GO"	"10"	"0"	"1"	"0"
"chlorophyll biosynthesis"	"AraCyc"	"10"	"4.23556411590344e-05"	"1"	"0.0753566129569219"
"lactose degradation IV"	"AraCyc"	"10"	"6.72309362647188e-16"	"2"	"2.10901586302163e-05"
"lipases pathway"	"AraCyc"	"10"	"7.39467192934842e-08"	"1"	"0.0212651074389600"
"stress response"	"FunCat"	"10"	"0"	"1"	"0"
"Folding, Sorting and Degradation"	"KEGG"	"10"	"0.0363925538692474"	"1"	"0.291107369040847"
"Protein export"	"KEGG"	"10"	"3.76621605576296e-07"	"1"	"0.0334924445711841"
"Starch and sucrose metabolism"	"KEGG"	"10"	"0.00838877555578915"	"2"	"0.0382325540268722"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"10"	"9.00189854840713e-06"	"1"	"0.0209068727824792"
"chlorophyll biosynthesis"	"LitPath"	"10"	"6.72704666756012e-11"	"1"	"0.00153185906242205"
"nuclear ubiquitin ligase complex"	"TAIR-GO"	"9"	"0"	"1"	"0"
"Carotenoid biosynthesis"	"BioPath"	"8"	"1.82932637467449e-07"	"1"	"0.00518927892644896"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"8"	"0.00954583702483231"	"1"	"0.113213773720884"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"8"	"1.03513302313903e-08"	"1"	"0.00203182833806190"
"abscisic acid biosynthesis"	"TAIR-GO"	"8"	"2.95386453635552e-09"	"1"	"0.00150085043014540"
"response to osmotic stress"	"TAIR-GO"	"8"	"1.64307868957476e-13"	"1"	"0.000204243402280705"
"response to water deprivation"	"TAIR-GO"	"8"	"0"	"1"	"0"
"sugar mediated signaling"	"TAIR-GO"	"8"	"1.96761982354197e-10"	"1"	"0.000507143040449882"
"xanthophyll biosynthesis "	"TAIR-GO"	"8"	"0"	"1"	"0"
"carotenoid biosynthesis"	"AraCyc"	"8"	"2.03295038680809e-07"	"1"	"0.003214392051522"
"fatty acid biosynthesis -- initial steps"	"AraCyc"	"8"	"2.04445866572847e-05"	"1"	"0.0314095705278465"
"xanthophyll cycle"	"AraCyc"	"8"	"2.06152099656868e-14"	"1"	"7.46546938103606e-05"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"8"	"2.69080190352868e-05"	"1"	"0.0302928932532187"
"Fatty acid biosynthesis (path 1)"	"KEGG"	"8"	"2.27569431843686e-06"	"1"	"0.0150198423245854"
"Propanoate metabolism"	"KEGG"	"8"	"7.74443243581913e-05"	"1"	"0.0356611242911662"
"Pyruvate metabolism"	"KEGG"	"8"	"0.0409115083894403"	"1"	"0.161776973053757"
"Tetracycline biosynthesis"	"KEGG"	"8"	"1.77746264766836e-10"	"1"	"0.000579455409598584"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"0.000510410138202741"	"1"	"0.0509905240783853"
"carotenid biosynthesis"	"LitPath"	"8"	"4.66141449825698e-08"	"1"	"0.00232645655268038"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"8"	"3.26196232227892e-06"	"1"	"0.0086213249296883"
"starch catabolism"	"TAIR-GO"	"7"	"3.72374308513065e-12"	"1"	"0.000102470045507462"
"acetyl-CoA assimilation"	"AraCyc"	"7"	"0.000250173096326628"	"1"	"0.0314095705278465"
"gluconeogenesis"	"AraCyc"	"7"	"0.00134340930160921"	"1"	"0.0584255535036145"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"7"	"7.53626962099976e-06"	"1"	"0.0168276758181217"
"MUTANT DATA SET"	"quantDE"	"1.028107"	"maxDE"	"3.04552223"	"MUTANT DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"91"	"1.19470309503758e-20"	"12"	"4.33564044257893e-05"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"44"	"9.43037484918266e-06"	"5"	"0.0548656368929754"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"40"	"1.81040082025392e-17"	"5"	"0.000375526044182457"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"40"	"0.000145041684027152"	"4"	"0.256766104770685"
"amino acid metabolism"	"FunCat"	"36"	"0.000395098433552646"	"5"	"0.0850346342772522"
"Biosynthesis of steroids"	"KEGG"	"35"	"1.44185877905058e-08"	"4"	"0.0155414687405887"
"Carotenoid biosynthesis"	"BioPath"	"34"	"2.91329091842804e-22"	"4"	"5.49860958155683e-05"
"carotenoid biosynthesis"	"AraCyc"	"34"	"7.99266589695335e-24"	"4"	"2.01596430126834e-05"
"carotenid biosynthesis"	"LitPath"	"34"	"2.85886428912628e-20"	"4"	"0.000100866760919592"
"Nitrogen metabolism"	"KEGG"	"33"	"1.89985538984543e-11"	"5"	"0.000462955458463533"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"30"	"9.42032944146234e-06"	"3"	"0.0534635517707806"
"sterol biosynthesis"	"BioPath"	"30"	"2.43679650156944e-08"	"3"	"0.0246559584840913"
"sterol biosynthesis"	"TAIR-GO"	"30"	"4.90086132415986e-12"	"3"	"0.0085767044063123"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"30"	"0.000249776162484112"	"3"	"0.0831436247253653"
"Glycolysis / Gluconeogenesis"	"KEGG"	"28"	"0.000335245029011544"	"6"	"0.0115484370315167"
"photorespiration"	"AraCyc"	"27"	"2.06408632925062e-12"	"4"	"0.0102613968854769"
"biogenesis of chloroplast"	"FunCat"	"26"	"6.37376862017352e-05"	"4"	"0.0339357933000052"
"Sulfur metabolism"	"KEGG"	"26"	"8.19500618743895e-11"	"4"	"0.000554710825676691"
"transport "	"FunCat"	"25"	"0"	"5"	"0"
"Delta-pH pathway"	"BioPath"	"24"	"0"	"3"	"0"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"24"	"8.347227193716e-12"	"3"	"0.00182908174470645"
"development"	"TAIR-GO"	"23"	"0.000551702763367358"	"3"	"0.0625757205426924"
"Carbon fixation"	"KEGG"	"23"	"0.00220722788502981"	"5"	"0.0176951993397625"
"Cyanoamino acid metabolism"	"KEGG"	"23"	"1.35829913731002e-12"	"3"	"0.00780815078557634"
"ascorbic acid biosynthesis"	"BioPath"	"22"	"5.28596767025966e-08"	"3"	"0.0116750796160381"
"cysteine biosynthesis I"	"AraCyc"	"21"	"2.66440754175004e-05"	"4"	"0.0181084561172022"
"transport facilitation"	"FunCat"	"21"	"0"	"4"	"0"
"ATP-dependent proteolysis"	"TAIR-GO"	"20"	"7.38354271227831e-16"	"5"	"1.86284948825746e-06"
"glycine biosynthesis I"	"AraCyc"	"20"	"1.98851074674900e-06"	"3"	"0.0899618266888188"
"sterol biosynthesis"	"AraCyc"	"20"	"5.28598514307941e-06"	"2"	"0.042946726735379"
"sulfate assimilation III"	"AraCyc"	"20"	"0.00169490025978982"	"3"	"0.0403351377819927"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"20"	"1.5264210829093e-16"	"2"	"0.0019270475852497"
"Cysteine metabolism"	"KEGG"	"20"	"7.57432854026882e-07"	"3"	"0.0103063893666261"
"Selenoamino acid metabolism"	"KEGG"	"20"	"1.39844451725718e-05"	"3"	"0.014938346422051"
"Translation factors"	"KEGG"	"20"	"0.00627252274408126"	"5"	"0.0584348952002997"
"Lipid signaling"	"AcylLipid"	"20"	"0.0402030631017956"	"6"	"0.0226852179738903"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"20"	"8.99863970454456e-11"	"2"	"0.0202300139267673"
"brassinosteroid biosynthesis"	"LitPath"	"20"	"0.00100191499330184"	"2"	"0.088146029286921"
"sterol and brassinosteroid biosynthesis"	"LitPath"	"20"	"1.58263186909121e-05"	"2"	"0.0372787957358219"
"hypersensitive response"	"TAIR-GO"	"19"	"2.79247077952364e-14"	"2"	"0.00133006509325717"
"Alanine and aspartate metabolism"	"KEGG"	"19"	"5.54284181788502e-06"	"2"	"0.077101099116154"
"Glutamate metabolism"	"KEGG"	"19"	"0.00289621628388534"	"2"	"0.161182689592609"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"18"	"3.40253909504627e-10"	"2"	"0.00250944878746153"
"carotene biosynthesis"	"TAIR-GO"	"18"	"9.29495181061983e-20"	"2"	"7.29928073687925e-05"
"indoleacetic acid biosynthesis"	"TAIR-GO"	"18"	"3.32281417563894e-15"	"2"	"0.00068595947134314"
"regulation of transcription"	"TAIR-GO"	"18"	"0"	"2"	"0"
"formylTHF biosynthesis"	"AraCyc"	"18"	"6.11805934170362e-09"	"3"	"0.00478340879236214"
"IAA biosynthesis"	"AraCyc"	"18"	"2.39571847114067e-08"	"2"	"0.0104556374264632"
"IAA biosynthesis I"	"AraCyc"	"18"	"4.51997897349812e-11"	"2"	"0.00435983865667698"
"plant / fungal specific systemic sensing and response "	"FunCat"	"18"	"5.10879357860809e-09"	"2"	"0.0176357513710746"
"plant hormonal regulation"	"FunCat"	"18"	"5.10879357860809e-09"	"2"	"0.0176357513710746"
"Chloroplastic protein turnover"	"BioPath"	"16"	"2.29205383678079e-09"	"4"	"9.09824172636907e-05"
"ClpP protease complex "	"BioPath"	"16"	"1.53663097866171e-13"	"4"	"1.60980894215575e-05"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"16"	"0.0130195534557898"	"2"	"0.141081741096213"
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	"16"	"1.38652399903871e-16"	"4"	"2.35835907157498e-06"
"Calvin cycle"	"AraCyc"	"16"	"0.00254152840248886"	"5"	"0.00347507707152058"
"photorespiration"	"TAIR-GO"	"15"	"2.4162455704192e-13"	"2"	"0.00068595947134314"
"cysteine biosynthesis II"	"AraCyc"	"15"	"4.13430694478407e-07"	"3"	"0.0118571604030783"
"transcription"	"FunCat"	"15"	"5.04762680424169e-12"	"3"	"0.000591902588565046"
"Protein folding / chaperonins (chloroplast)"	"BioPath"	"14"	"8.72184064227577e-06"	"3"	"0.00247500365397089"
"embryonic development"	"TAIR-GO"	"14"	"0.00170201801489874"	"2"	"0.0433018713869365"
"embryonic development (sensu Magnoliophyta)"	"TAIR-GO"	"14"	"2.66096707631907e-05"	"2"	"0.0189312536927248"
"response to water deprivation"	"TAIR-GO"	"14"	"0"	"2"	"0"
"ascorbate glutathione cycle"	"AraCyc"	"14"	"1.99371321103845e-05"	"3"	"0.00302762342540026"
"homocysteine and cysteine interconversion"	"AraCyc"	"14"	"3.23844355967039e-08"	"2"	"0.0060477365701404"
"photosynthesis"	"FunCat"	"14"	"0.0170697585099928"	"4"	"0.00920015723941455"
"Ascorbate and aldarate metabolism"	"KEGG"	"14"	"0.000919001473493733"	"2"	"0.0453122532224138"
"Protein export"	"KEGG"	"14"	"9.77300038416017e-05"	"2"	"0.0656268372094636"
"valine degradation I"	"AraCyc"	"13"	"0.00238630461247896"	"3"	"0.0443449699015281"
"valine degradation II"	"AraCyc"	"13"	"1.02954659530203e-06"	"3"	"0.00383788064981861"
"degradation "	"FunCat"	"13"	"1.31076160800096e-05"	"2"	"0.0407445925908935"
"protein degradation "	"FunCat"	"13"	"1.85167501489289e-07"	"2"	"0.0176357513710746"
"Tryptophan metabolism"	"KEGG"	"13"	"0.00104827208015421"	"2"	"0.0958260374904508"
"protein biosynthesis"	"TAIR-GO"	"12"	"0"	"2"	"0"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"12"	"0.0456263175284155"	"2"	"0.243927275590746"
"galactose degradation I"	"AraCyc"	"12"	"5.30788096811864e-11"	"2"	"0.0019270475852497"
"glucose conversion"	"AraCyc"	"12"	"0.0253716660151215"	"2"	"0.211987108745653"
"lactose degradation IV"	"AraCyc"	"12"	"5.30788096811864e-11"	"2"	"0.0019270475852497"
"threonine degradation"	"AraCyc"	"12"	"9.98193580915238e-06"	"5"	"0.000119727918670543"
"UDP-glucose conversion"	"AraCyc"	"12"	"0.0210558767076568"	"2"	"0.201555210864992"
"ATP synthesis"	"KEGG"	"12"	"0.021467882767752"	"3"	"0.0389301193716649"
"Glycine, serine and threonine metabolism"	"KEGG"	"12"	"0.0258106864126966"	"2"	"0.109241644667458"
"isoleucine degradation I"	"AraCyc"	"11"	"0.0191043277150753"	"2"	"0.067987069907111"
"isoleucine degradation III"	"AraCyc"	"11"	"4.31857484732069e-05"	"2"	"0.0104556374264632"
"leucine degradation I"	"AraCyc"	"11"	"0.0191043277150753"	"2"	"0.067987069907111"
"leucine degradation II"	"AraCyc"	"11"	"4.31857484732069e-05"	"2"	"0.0104556374264632"
"serine biosynthesis"	"AraCyc"	"11"	"2.77623825244526e-08"	"2"	"0.0019270475852497"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"11"	"0.000170983599115013"	"2"	"0.054775508248895"
"channel / pore class transport"	"FunCat"	"11"	"1.91122116380023e-07"	"2"	"0.00902607279901184"
"ion channels"	"FunCat"	"11"	"3.39114200612873e-07"	"2"	"0.0231894946460802"
"Ion channels"	"KEGG"	"11"	"0.0044397261399238"	"2"	"0.210470829850492"
"Ligand-Receptor Interaction"	"KEGG"	"11"	"0.00555422540494631"	"2"	"0.227595235118753"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"11"	"0.000415671210819784"	"2"	"0.00852658891389202"
"aspartate/ornithin cycle / nitric oxid from glutamate"	"BioPath"	"10"	"0.000321378204469218"	"1"	"0.122609408835440"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"8.14993227755936e-08"	"1"	"0.00552912623594807"
"Cytochrome b6/f complex"	"BioPath"	"10"	"5.83624745847264e-05"	"1"	"0.0558397948665307"
"Phytic acid biosynthesis"	"BioPath"	"10"	"0.0293848400758917"	"2"	"0.0764054218475481"
"Plastoquinone biosynthesis"	"BioPath"	"10"	"4.02633830890758e-14"	"1"	"0.00189745979348127"
"Tocopherol biosynthesis"	"BioPath"	"10"	"2.27671441437382e-05"	"1"	"0.0173937073042966"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"3.92889862341394e-10"	"1"	"0.00189745979348127"
"brassinosteroid biosynthesis"	"TAIR-GO"	"10"	"0.0080838999324583"	"1"	"0.0885797370320146"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"10"	"0.0112654678128283"	"2"	"0.0375836317824922"
"chlorophyll biosynthesis"	"TAIR-GO"	"10"	"0.0410601455323491"	"1"	"0.115724445484517"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"3.49958971087741e-08"	"1"	"0.00515545495008471"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"4.10614768027657e-07"	"1"	"0.0100278765654741"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"3.49958971087741e-08"	"1"	"0.00515545495008471"
"electron transport"	"TAIR-GO"	"10"	"0.0410601455323491"	"1"	"0.206033536256921"
"glutathione metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glycine catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methionine biosynthesis"	"TAIR-GO"	"10"	"3.00654486290740e-07"	"1"	"0.0100278765654741"
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	"10"	"0"	"1"	"0"
"phytochromobilin biosynthesis"	"TAIR-GO"	"10"	"3.49958971087741e-08"	"1"	"0.00515545495008471"
"plastid organization and biogenesis"	"TAIR-GO"	"10"	"5.83691771580727e-09"	"1"	"0.0100278765654741"
"plastoquinone biosynthesis"	"TAIR-GO"	"10"	"1.62548926440876e-10"	"1"	"0.00176714685494077"
"positive regulation of transcription"	"TAIR-GO"	"10"	"2.30964620138832e-08"	"1"	"0.00515545495008471"
"protein binding"	"TAIR-GO"	"10"	"1.09575100388212e-07"	"1"	"0.0162558212948948"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"steroid biosynthesis"	"TAIR-GO"	"10"	"0.0080838999324583"	"1"	"0.0885797370320146"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"unidimensional cell growth"	"TAIR-GO"	"10"	"0.0080838999324583"	"1"	"0.101896846657118"
"vitamin E biosynthesis"	"TAIR-GO"	"10"	"9.8145197366105e-07"	"1"	"0.0100278765654741"
"ascorbate biosynthesis"	"AraCyc"	"10"	"2.67647760478709e-06"	"1"	"0.0471915920785767"
"brassinosteroid biosynthesis I"	"AraCyc"	"10"	"0.0063617813295971"	"1"	"0.188124792745505"
"brassinosteroid biosynthesis II"	"AraCyc"	"10"	"3.18051925622583e-05"	"1"	"0.080055961853787"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"10"	"3.78343615490307e-05"	"1"	"0.0922115025178544"
"lipases pathway"	"AraCyc"	"10"	"0.0457511441929512"	"2"	"0.0824993479322528"
"methionine biosynthesis II"	"AraCyc"	"10"	"0.000843647475270211"	"1"	"0.0922115025178544"
"peptidoglycan biosynthesis"	"AraCyc"	"10"	"2.10678229809638e-07"	"1"	"0.0376734246514878"
"plastoquinone biosynthesis"	"AraCyc"	"10"	"1.44627825262899e-08"	"1"	"0.00896746032372907"
"starch biosynthesis"	"AraCyc"	"10"	"0"	"1"	"0"
"sucrose biosynthesis"	"AraCyc"	"10"	"0.0102790028982246"	"1"	"0.188124792745505"
"sucrose degradation III"	"AraCyc"	"10"	"0.00103985601169557"	"1"	"0.131410974608389"
"vitamin E biosynthesis"	"AraCyc"	"10"	"4.48222914810466e-05"	"1"	"0.0290034507624256"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"10"	"0.000387865914494901"	"1"	"0.0719231153284001"
"C-compound, carbohydrate anabolism"	"FunCat"	"10"	"6.43119201877628e-05"	"1"	"0.108558075810963"
"ionic homeostasis "	"FunCat"	"10"	"0"	"1"	"0"
"transport ATPases"	"FunCat"	"10"	"0.00983448313483224"	"2"	"0.0684572285583365"
"Fluorene degradation"	"KEGG"	"10"	"0.00103821835344796"	"1"	"0.0829205930759511"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"0.00334454533894659"	"1"	"0.103044038612625"
"Methionine metabolism"	"KEGG"	"10"	"0.00655427231207533"	"1"	"0.135346013700476"
"Terpenoid biosynthesis"	"KEGG"	"10"	"0.0136593436081597"	"1"	"0.157968873222839"
"chlorophyll biosynthesis"	"LitPath"	"10"	"0.0138801503092255"	"1"	"0.0740106358791415"
"chlorophyll catabolism"	"LitPath"	"10"	"4.51444593984022e-07"	"1"	"0.0075027656130632"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"0.00103317468506542"	"1"	"0.04606701238966"
"calmodulin binding"	"TAIR-GO"	"9"	"0.00186949026588549"	"1"	"0.101896846657118"
"flower development"	"TAIR-GO"	"9"	"1.25948875742627e-05"	"1"	"0.0162558212948948"
"L-serine biosynthesis"	"TAIR-GO"	"9"	"1.98365456612554e-10"	"1"	"0.00176714685494077"
"response to pathogenic bacteria"	"TAIR-GO"	"9"	"7.8709248410102e-06"	"1"	"0.0162558212948948"
"seed germination"	"TAIR-GO"	"9"	"3.16944758264211e-14"	"1"	"0"
"alanine biosynthesis II"	"AraCyc"	"9"	"0.030201261210723"	"1"	"0.262444413660575"
"alanine degradation III"	"AraCyc"	"9"	"1.96051160031234e-09"	"1"	"0.00460409146747015"
"mRNA synthesis "	"FunCat"	"9"	"0.00373279585893909"	"2"	"0.0448739817590228"
"oxidation of fatty acids "	"FunCat"	"9"	"7.5118435046837e-15"	"1"	"0.000881485709340492"
"RNA synthesis "	"FunCat"	"9"	"0.00373279585893909"	"2"	"0.0448739817590228"
"Protein folding and associated processing"	"KEGG"	"9"	"0.0134579233610293"	"1"	"0.204970791241915"
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	"9"	"0.026567100606711"	"1"	"0.259579919481856"
"Early light-inducible proteins"	"BioPath"	"8"	"0.000621548142108916"	"1"	"0.0344862485392657"
"light harvesting complex"	"BioPath"	"8"	"0.000453948677318502"	"1"	"0.0253500200387502"
"Translation (chloroplast)"	"BioPath"	"8"	"0.000228499799864832"	"2"	"0.00250944878746153"
"abscisic acid biosynthesis"	"TAIR-GO"	"8"	"0.00439297961338233"	"1"	"0.063764078364545"
"carotenoid biosynthesis"	"TAIR-GO"	"8"	"0.00327391246401354"	"1"	"0.0419043186860864"
"response to osmotic stress"	"TAIR-GO"	"8"	"1.11864852839808e-06"	"1"	"0.0100278765654741"
"sugar mediated signaling"	"TAIR-GO"	"8"	"0.000535133793916423"	"1"	"0.0237186993957136"
"xanthophyll biosynthesis "	"TAIR-GO"	"8"	"0"	"1"	"0"
"methylglyoxal degradation"	"AraCyc"	"8"	"0.000520668310319722"	"3"	"0.00177234567842779"
"xanthophyll cycle"	"AraCyc"	"8"	"2.33676300139174e-08"	"1"	"0.00157602959487721"
"C-compound and carbohydrate utilization "	"FunCat"	"8"	"4.04940632867999e-11"	"2"	"0"
"N-Glycan biosynthesis"	"KEGG"	"8"	"0.00236158278733285"	"1"	"0.113558339248714"
"One carbon pool by folate"	"KEGG"	"8"	"0.000295090477365491"	"2"	"0.00927830337642664"
"DNA-directed RNA polymerase II, holoenzyme"	"TAIR-GO"	"7"	"0"	"1"	"0"
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	"7"	"0"	"1"	"0"
"rRNA synthesis "	"FunCat"	"7"	"8.6024963365869e-10"	"1"	"0.000881485709340492"
"tRNA synthesis "	"FunCat"	"7"	"6.85751003043726e-06"	"1"	"0.0167844612938724"