"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN THREE DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "photosynthesis" "FunCat" "148" "25" "" "" "photosynthesis" "FunCat" "148" "25" "" "" "C-compound and carbohydrate metabolism" "FunCat" "139" "23" "" "" "chlorophyll biosynthesis" "AraCyc" "132" "15" "" "" "chlorophyll biosynthesis" "AraCyc" "132" "15" "" "" "chlorophyll biosynthesis" "AraCyc" "132" "15" "" "" "glycolysis and gluconeogenesis" "FunCat" "109" "16" "" "" "photorespiration" "AraCyc" "104" "19" "" "" "photorespiration" "AraCyc" "104" "19" "" "" "ORGAN DATA SET" "quantDE" "1.730113" "maxDE" "2.9034759" "ORGAN DATA SET" "Photosystems " "BioPath" "224" "4.43210001028078e-62" "35" "1.23553594107168e-13" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "153" "1.09278938700333e-24" "21" "1.4661191828287e-06" "photosynthesis" "FunCat" "110" "1.70735404889400e-72" "18" "3.49733781853232e-15" "C-compound and carbohydrate metabolism" "FunCat" "107" "1.10580823863060e-07" "18" "0.0224239742902765" "Photosynthesis" "KEGG" "97" "1.84030759095616e-80" "17" "3.28537672284783e-18" "additional photosystem II components" "BioPath" "95" "6.84944587471716e-29" "15" "5.52369281522987e-08" "biogenesis of chloroplast" "FunCat" "91" "3.32749248003254e-36" "14" "3.15137909402688e-08" "Photosystem I" "BioPath" "87" "2.21711058252333e-15" "14" "8.16573883315468e-05" "glycolysis and gluconeogenesis" "FunCat" "83" "5.55505601740787e-17" "13" "0.000562588896732951" "Carbon fixation" "KEGG" "80" "1.54938893907319e-33" "12" "4.0808489103653e-07" "Chlorophyll biosynthesis and breakdown" "BioPath" "67" "8.33765078743854e-13" "8" "0.00172423002250934" "chlorophyll and phytochromobilin metabolism" "LitPath" "67" "1.46696466078979e-24" "8" "0.000106190610284584" "Porphyrin and chlorophyll metabolism" "KEGG" "63" "3.27922648440612e-36" "8" "2.5259900830561e-07" "photorespiration" "AraCyc" "62" "1.84650198936082e-39" "12" "5.47632581696213e-08" "Calvin cycle" "AraCyc" "60" "1.29708396159537e-27" "11" "1.98820216865277e-06" "Glycolysis / Gluconeogenesis" "KEGG" "58" "9.00193315455415e-15" "9" "0.000434075988054092" "chlorophyll biosynthesis" "AraCyc" "54" "5.80631286955879e-14" "7" "0.0153559985226276" "transport " "FunCat" "53" "0" "8" "0" "acetate fermentation" "AraCyc" "50" "9.11336935346944e-11" "9" "0.00968711794121594" "fructose degradation (anaerobic)" "AraCyc" "50" "9.70291967485192e-12" "9" "0.00562685275895568" "glycolysis I" "AraCyc" "50" "0.0084710755492581" "9" "0.291343549356076" "glycolysis IV" "AraCyc" "50" "1.29922253358078e-11" "9" "0.00630685785953314" "sorbitol fermentation" "AraCyc" "50" "1.18820954517452e-10" "9" "0.0078575377337829" "Carotenoid and abscisic acid metabolism" "LitPath" "50" "1.03034519048404e-24" "7" "1.77247498897951e-05" "Photosystem II" "BioPath" "49" "1.61128734358497e-05" "7" "0.018928109408725" "Chlorophyll a/b binding proteins" "BioPath" "48" "1.03023578981731e-13" "6" "0.000801700706024024" "photosystem I" "TAIR-GO" "48" "0" "6" "1.1827150814676e-09" "Carotenoid biosynthesis" "BioPath" "46" "1.32359398023667e-22" "6" "9.81017206476338e-06" "carotenid biosynthesis" "LitPath" "46" "2.02895176649265e-32" "6" "8.10813193888146e-07" "carotenoid biosynthesis" "AraCyc" "44" "2.22912705887638e-28" "5" "1.03322773308425e-05" "chlorophyll biosynthesis" "TAIR-GO" "39" "9.48080272109065e-18" "4" "0.000591545231169157" "transport facilitation" "FunCat" "39" "0" "6" "0" "chlorophyll biosynthesis" "LitPath" "39" "2.34018668507048e-25" "4" "9.47588536667067e-05" "gluconeogenesis" "AraCyc" "38" "6.09884189163997e-08" "6" "0.0215554147720327" "Pentose phosphate pathway" "KEGG" "38" "2.20365386291776e-14" "6" "0.000613640915224232" "Synthesis of membrane lipids in plastids" "AcylLipid" "37" "1.2306653620438e-28" "4" "0.000101788965583981" "glycine biosynthesis I" "AraCyc" "36" "1.20335445969802e-12" "8" "0.00119652346999644" "superpathway of serine and glycine biosynthesis II" "AraCyc" "36" "5.73829390251022e-23" "8" "3.42913180417805e-06" "Biosynthesis of steroids" "KEGG" "36" "3.92950746664383e-06" "5" "0.00616074281707624" "Fructose and mannose metabolism" "KEGG" "36" "1.54270818099338e-09" "5" "0.00616074281707624" "Folding, Sorting and Degradation" "KEGG" "35" "0.0156023658916829" "5" "0.198559658571087" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "34" "1.65370451832347e-11" "4" "0.00379287055031902" "Transcription (chloroplast)" "BioPath" "34" "4.50655229620159e-20" "4" "9.69423425631755e-05" "photorespiration" "TAIR-GO" "34" "0" "5" "0" "transcription initiation" "TAIR-GO" "34" "5.94906384364367e-26" "4" "2.15663516649208e-05" "photosystem II" "TAIR-GO" "33" "1.09101892597348e-39" "4" "4.39908245530774e-07" "photosystem I reaction center" "BioPath" "28" "5.71743483913838e-19" "6" "1.25232408493425e-06" "Thylakoid biogenesis and photosystem assembly" "BioPath" "28" "3.02786905303697e-12" "3" "0.00172548139417382" "mannitol degradation" "AraCyc" "28" "4.65123073916541e-12" "5" "0.00388056356720136" "sorbitol degradation" "AraCyc" "28" "1.41671825280886e-11" "5" "0.004782337869514" "glycosylglyceride desaturation pathway" "AraCyc" "27" "9.89783599783203e-26" "3" "1.57612379547014e-05" "Glycine, serine and threonine metabolism" "KEGG" "27" "1.85893995129674e-07" "5" "0.00173162110419049" "Protein export" "KEGG" "26" "1.37428989042438e-10" "4" "0.00363025428251196" "electron transport" "TAIR-GO" "25" "1.17527573631716e-07" "3" "0.0205445983935473" "photosynthetic electron transport" "TAIR-GO" "25" "2.23805450396297e-21" "3" "0.000115173346383332" "Oxygen-evolving enhancer protein" "BioPath" "24" "2.42771005824249e-18" "3" "0.000284872934978891" "formylTHF biosynthesis" "AraCyc" "22" "8.21456454744364e-09" "3" "0.0237786175177432" "glyceraldehyde 3-phosphate degradation" "AraCyc" "22" "6.2766988426989e-07" "4" "0.0128582708164116" "glycerol degradation II" "AraCyc" "22" "0.00913089611696423" "4" "0.153164038709322" "ATP synthase components" "BioPath" "20" "3.32049800441111e-06" "3" "0.00834697736746077" "mRNA processing in chloroplast" "BioPath" "20" "9.49674140029464e-08" "4" "0.00251431511346089" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "20" "4.66992962846096e-08" "2" "0.0113629178908911" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "cytochrome b6f complex" "TAIR-GO" "20" "3.21513321980991e-15" "2" "0.00279274105742225" "pentose-phosphate shunt" "TAIR-GO" "20" "4.07377931289348e-09" "3" "0.00294196154800775" "positive regulation of transcription" "TAIR-GO" "20" "5.44491704451455e-20" "2" "0.000157681973102108" "regulation of transcription" "TAIR-GO" "20" "0" "2" "0" "ascorbate glutathione cycle" "AraCyc" "20" "1.17802197275028e-06" "2" "0.0762879465710816" "biosynthesis of proto- and siroheme" "AraCyc" "20" "0.038672706127713" "4" "0.114603781946214" "phospholipid desaturation pathway" "AraCyc" "20" "2.47115622669988e-12" "2" "0.00228497806402931" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "20" "3.18796029023304e-10" "3" "0.00267626267953432" "energy" "FunCat" "20" "0" "3" "0" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "20" "2.87891122274785e-14" "2" "0.00346419651694682" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "20" "7.36133482327185e-17" "2" "0.000894877325657616" "Androgen and estrogen metabolism" "KEGG" "20" "2.32213820645613e-16" "2" "0.00152397478251375" "Benzoate degradation via hydroxylation" "KEGG" "20" "2.5406896921835e-11" "2" "0.00481661645820364" "Glutathione metabolism" "KEGG" "20" "0.00446833243731993" "2" "0.199034560975182" "lactose degradation IV" "AraCyc" "19" "6.79631017048814e-18" "5" "4.05530755598406e-07" "Glutamate metabolism" "KEGG" "19" "0.0443540999713538" "2" "0.208613583035753" "light harvesting complex" "BioPath" "18" "7.35960834957328e-08" "2" "0.0113629178908911" "carotene biosynthesis" "TAIR-GO" "18" "2.36878544958862e-17" "2" "0.000157681973102108" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "formaldehyde assimilation I (serine pathway)" "AraCyc" "18" "0.00943268250013963" "3" "0.153109851166491" "glycine degradation I" "AraCyc" "18" "1.55936230277459e-13" "4" "0.000100241900281004" "Nitrogen metabolism" "KEGG" "18" "0.0261550935318084" "4" "0.00563506050570018" "calmodulin binding" "TAIR-GO" "17" "3.50485898846241e-07" "2" "0.0301828531431240" "Early light-inducible proteins" "BioPath" "16" "4.28833774952477e-06" "2" "0.0185909952634291" "carotenoid biosynthesis" "TAIR-GO" "16" "3.94992811465514e-07" "2" "0.00721469598079068" "chlorophyll binding" "TAIR-GO" "16" "0.000155252333807561" "2" "0.0301828531431240" "photosynthesis" "TAIR-GO" "16" "0.00398334896229193" "3" "0.0205445983935473" "response to high light intensity" "TAIR-GO" "16" "3.05781702322854e-15" "2" "0.000157681973102108" "cysteine biosynthesis II" "AraCyc" "16" "2.08999151903683e-05" "6" "0.000384186733386329" "serine biosynthesis" "AraCyc" "16" "3.06876208980532e-11" "6" "3.79029389006721e-09" "pentose-phosphate pathway " "FunCat" "16" "0.000124116044344018" "2" "0.0641809071436009" "transported compounds (substrates)" "FunCat" "16" "0" "3" "0" "photosynthetic electron transport in photosystem I" "TAIR-GO" "15" "3.37260000598503e-14" "2" "0.000157681973102108" "galactose degradation I" "AraCyc" "15" "2.56221326304013e-12" "4" "1.85761870418179e-05" "Delta-pH pathway" "BioPath" "14" "6.09791707952508e-10" "2" "0.000696572943177684" "Ferredoxin" "BioPath" "14" "1.50817642950997e-05" "3" "0.00537970806026777" "sucrose biosynthesis" "AraCyc" "14" "0.0073371106311021" "2" "0.12933429503365" "respiration" "FunCat" "14" "0.00050065853723437" "2" "0.0266465000211713" "transport ATPases" "FunCat" "14" "0.0189415480711472" "2" "0.169104344514577" "ATP synthesis" "KEGG" "14" "0.0389010371428845" "2" "0.180222640964193" "Glyoxylate and dicarboxylate metabolism" "KEGG" "14" "0.00846459605213406" "3" "0.0179955096703722" "polyprenyl diphosphate biosynthesis" "LitPath" "14" "3.34943280433987e-09" "2" "0.0113240869490871" "phosphate transport" "TAIR-GO" "13" "3.81345362936402e-11" "2" "0.000605627496690137" "psbP family of thylakoid proteins" "BioPath" "12" "9.57001399083938e-08" "4" "2.98655772701818e-05" "glycine decarboxylation via glycine cleavage system" "TAIR-GO" "12" "0" "2" "0" "cyanate degradation" "AraCyc" "12" "1.46439613557630e-07" "2" "0.0447741332028099" "electron / hydrogen transport " "FunCat" "12" "1.03489851074298e-08" "2" "0.00157381610713359" "Ion channels" "KEGG" "11" "0.032289986977057" "2" "0.267891175566116" "Ligand-Receptor Interaction" "KEGG" "11" "0.0388536056896741" "2" "0.288115075190869" "Chloroplastic protein turnover" "BioPath" "10" "0.036674696320743" "1" "0.290112657786992" "Cytochrome b6/f complex" "BioPath" "10" "0.0203291065329124" "1" "0.18760556174812" "FtsH protease (many homologues / subcellular localization ambiguous)" "BioPath" "10" "0" "1" "0" "photosystem I subunit precursor" "BioPath" "10" "2.02420879774776e-05" "1" "0.0658515011607929" "Plastocyanin" "BioPath" "10" "7.82493162236898e-07" "1" "0.0078885397411148" "Regulatory enzymes" "BioPath" "10" "9.76662294964754e-05" "1" "0.022272473336989" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "2.79060980957129e-05" "1" "0.0264190885267323" "chloroplast ATP synthase complex" "TAIR-GO" "10" "3.74150660116065e-09" "1" "0.00294489856431651" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "7.36210692321142e-06" "1" "0.0164330359968005" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "6.95147393245128e-07" "1" "0.00851933174674532" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "magnesium chelatase complex" "TAIR-GO" "10" "1.21802075859813e-10" "1" "0.00294489856431651" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "1.13577568169793e-11" "1" "0.00294489856431651" "photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "10" "1.01893189230225e-06" "1" "0.0164330359968005" "plastid organization and biogenesis" "TAIR-GO" "10" "1.22965832533107e-07" "1" "0.0164330359968005" "protein binding" "TAIR-GO" "10" "2.08291151353471e-06" "1" "0.0264190885267323" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "proton transport" "TAIR-GO" "10" "2.79060980957129e-05" "1" "0.0264190885267323" "response to temperature" "TAIR-GO" "10" "4.65567613256060e-07" "1" "0.00851933174674532" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "0.00136917534049512" "1" "0.197324073721971" "peptidoglycan biosynthesis" "AraCyc" "10" "1.22597781732869e-05" "1" "0.0869169165080495" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "sucrose degradation III" "AraCyc" "10" "0.0223029128505165" "1" "0.269308953020491" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "0.000241045296382934" "1" "0.0679603859334642" "xanthophyll cycle" "AraCyc" "10" "2.73950795029599e-09" "1" "0.00399973500720449" "aerobic respiration" "FunCat" "10" "0.0260296513793782" "1" "0.142126996268391" "C-compound, carbohydrate anabolism" "FunCat" "10" "0.0051718132174529" "1" "0.206819449364044" "electron transport and membrane-associated energy conservation " "FunCat" "10" "1.89358157148556e-05" "1" "0.0578934730539231" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "2" "0" "chlorophyll a biosynthesis" "LitPath" "10" "0" "1" "0" "MEP (methylerythritol P) pathway, plastids" "LitPath" "10" "0.00303672444404576" "2" "0.0162216132212330" "phytochromobilin biosynthesis" "LitPath" "10" "0.00208466700263939" "1" "0.0700069463885503" "carbohydrate biosynthesis" "TAIR-GO" "9" "0" "1" "0" "cation transport" "TAIR-GO" "9" "1.49511154314822e-10" "1" "0.00294489856431651" "hypersensitive response" "TAIR-GO" "9" "0.000958219309554942" "1" "0.0382322622613873" "myo-inositol biosynthesis" "TAIR-GO" "9" "0" "1" "0" "starch biosynthesis" "TAIR-GO" "9" "0.00596663475948266" "1" "0.0516474882746205" "sucrose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "1.04504055728325e-07" "1" "0.0114961063060994" "channel / pore class transport" "FunCat" "9" "0.000899462986413255" "1" "0.142126996268391" "protein degradation " "FunCat" "9" "0.0104160569736802" "1" "0.206819449364044" "Membrane Transport" "KEGG" "9" "0.0081667494880669" "1" "0.192532717405688" "Other ion-coupled transporters" "KEGG" "9" "0.000333314697839167" "1" "0.0694915432474979" "Streptomycin biosynthesis" "KEGG" "9" "0.00455350252930176" "1" "0.08020149599498" "photosystem II type II chlorophyll a /b binding protein" "BioPath" "8" "0.00354589512570868" "1" "0.0419424618047332" "Tic apparatus" "BioPath" "8" "0.00354589512570868" "2" "0.0278188862545771" "Translation (chloroplast)" "BioPath" "8" "0.0298415297968124" "2" "0.0185909952634291" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "PSII associated light-harvesting complex II" "TAIR-GO" "8" "8.02723602973437e-08" "1" "0.00294489856431651" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "N-Glycan biosynthesis" "KEGG" "8" "0.0135438737501788" "1" "0.139886972086079" "One carbon pool by folate" "KEGG" "8" "0.00206174692667072" "2" "0.0131166154283738" "proton gradient regulation" "BioPath" "7" "0" "1" "0" "fatty acid desaturation" "TAIR-GO" "7" "7.39759305978502e-05" "1" "0.00851933174674532" "photoinhibition" "TAIR-GO" "7" "0.000136293095007289" "1" "0.00851933174674532" "photosystem II assembly" "TAIR-GO" "7" "1.72842482900190e-05" "1" "0.00851933174674532" "photosystem II stabilization" "TAIR-GO" "7" "2.56594724396318e-06" "1" "0.00294489856431651" "STRESS DATA SET" "quantDE" "1.4492" "maxDE" "5.318482" "STRESS DATA SET" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "30" "4.95732014824343e-06" "3" "0.0574174936308345" "Photosystems " "BioPath" "24" "0.00243309578085920" "5" "0.0100030581844446" "C-compound and carbohydrate metabolism" "FunCat" "22" "0.000389086417571954" "4" "0.027244858701426" "Chlorophyll biosynthesis and breakdown" "BioPath" "20" "9.20611327554214e-08" "2" "0.0196223679838747" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "20" "3.52563840433923e-16" "2" "0.00131794822551132" "Transcription (chloroplast)" "BioPath" "20" "2.79116001620977e-21" "2" "0.000173839346825590" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "positive regulation of transcription" "TAIR-GO" "20" "2.38724497341457e-34" "2" "1.40693137699994e-06" "regulation of transcription" "TAIR-GO" "20" "0" "2" "0" "transcription initiation" "TAIR-GO" "20" "2.27778687459743e-24" "2" "7.58197319349912e-05" "chlorophyll and phytochromobilin metabolism" "LitPath" "20" "2.38061041247042e-11" "2" "0.00321146806103952" "Gluconeogenesis from lipids in seeds" "BioPath" "18" "0.000230519042560158" "3" "0.0308216979694898" "Pentose phosphate pathway" "KEGG" "18" "7.13351437858018e-16" "3" "9.66719867242248e-05" "mRNA synthesis " "FunCat" "17" "9.19361418853246e-18" "2" "0.000695784442107435" "RNA synthesis " "FunCat" "17" "9.19361418853246e-18" "2" "0.000695784442107435" "transcription" "FunCat" "17" "2.25949922411821e-24" "2" "9.16160476322276e-05" "transcriptional control" "FunCat" "17" "5.75895785023286e-22" "2" "5.5855574032755e-05" "acetate fermentation" "AraCyc" "16" "2.44877347061805e-07" "2" "0.0474029648665773" "Calvin cycle" "AraCyc" "16" "2.40407637045300e-10" "2" "0.0102421748042115" "fructose degradation (anaerobic)" "AraCyc" "16" "1.05959942375738e-07" "2" "0.0391476816860494" "glycolysis I" "AraCyc" "16" "0.000856922501478208" "2" "0.198201819302047" "glycolysis IV" "AraCyc" "16" "1.18063090794916e-07" "2" "0.040734228728668" "mannitol degradation" "AraCyc" "16" "1.12067836582634e-14" "2" "0.00311469865748035" "sorbitol degradation" "AraCyc" "16" "2.26182463488131e-14" "2" "0.00349143357095775" "sorbitol fermentation" "AraCyc" "16" "2.70754634710765e-07" "2" "0.0440044257470427" "glycolysis and gluconeogenesis" "FunCat" "16" "1.41810185618739e-05" "2" "0.0419087208378223" "pentose-phosphate pathway " "FunCat" "16" "1.58889431246910e-16" "2" "0.000324725454736203" "Carbon fixation" "KEGG" "16" "1.56922502413975e-09" "2" "0.00700056588720455" "Fructose and mannose metabolism" "KEGG" "16" "1.1719975694793e-11" "2" "0.00262702984492202" "Glycolysis / Gluconeogenesis" "KEGG" "16" "1.16734978364040e-08" "2" "0.0111695734933850" "photosynthesis" "TAIR-GO" "14" "2.70223985330773e-10" "2" "0.00140770014361072" "additional photosystem II components" "BioPath" "10" "0.0210879848936804" "3" "0.0045235016558511" "ascorbic acid biosynthesis" "BioPath" "10" "4.37251835499524e-05" "1" "0.0521370362110443" "Chlorophyll a/b binding proteins" "BioPath" "10" "0.000230184391267585" "1" "0.0434115281174313" "Delta-pH pathway" "BioPath" "10" "2.7405813287547e-13" "1" "0.000912113984265258" "light harvesting complex" "BioPath" "10" "1.63146117667506e-09" "1" "0.00440777864354073" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "10" "9.3511264732793e-09" "1" "0.00440777864354073" "Thylakoid biogenesis and photosystem assembly" "BioPath" "10" "7.81084422445895e-08" "1" "0.00610135436222678" "chlorophyll catabolism" "TAIR-GO" "10" "5.22994518052428e-14" "1" "0.000391327913002698" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "7.57115388456478e-13" "1" "0.000777071169825264" "hypersensitive response" "TAIR-GO" "10" "4.52543946646766e-11" "1" "0.00191507432824642" "pentose-phosphate shunt" "TAIR-GO" "10" "4.36220462667560e-09" "1" "0.00807295332501065" "photosynthesis, dark reaction" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "ascorbate glutathione cycle" "AraCyc" "10" "5.50333087733474e-08" "1" "0.0152536010132686" "biosynthesis of proto- and siroheme" "AraCyc" "10" "9.98914798896903e-05" "1" "0.0863035101128617" "glycine degradation I" "AraCyc" "10" "8.46143909820273e-13" "2" "0.000130223762865151" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "10" "9.8324081508763e-12" "1" "0.00205852595968142" "Folding, Sorting and Degradation" "KEGG" "10" "0.00216471805631223" "1" "0.139851803395525" "Porphyrin and chlorophyll metabolism" "KEGG" "10" "3.33697128214882e-07" "1" "0.0116393057907808" "Protein export" "KEGG" "10" "6.14095530148648e-09" "1" "0.0133625705325151" "RNA polymerase" "KEGG" "10" "1.28269361050683e-07" "1" "0.0246369005559058" "Transcription" "KEGG" "10" "1.92764880545189e-05" "1" "0.0805575947777729" "chlorophyll catabolism" "LitPath" "10" "5.36237823646628e-14" "1" "0.000272350054854077" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "10" "5.73589397223421e-06" "1" "0.0158547823441880" "MEP (methylerythritol P) pathway, plastids" "LitPath" "10" "8.5823109008649e-10" "1" "0.00317267159549506" "phytochromobilin biosynthesis" "LitPath" "10" "5.12398641653415e-10" "1" "0.00186913471748484" "mRNA processing in chloroplast" "BioPath" "8" "1.74526322153960e-06" "2" "0.00102653061177081" "photorespiration" "AraCyc" "8" "5.51429945883622e-05" "2" "0.00751301473938725" "photosynthesis" "FunCat" "8" "0.000466542507505077" "2" "0.00292633554990812" "gibberellic acid biosynthesis" "TAIR-GO" "7" "4.38338790810697e-05" "1" "0.00677560369762283" "photomorphogenesis" "TAIR-GO" "7" "2.53090686321930e-11" "1" "0.000391327913002698" "HORMONE DATA SET" "quantDE" "1.642796" "maxDE" "2.7689168" "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "10" "4.34151824147495e-07" "1" "0.0158200354685588" "sucrose metabolism" "BioPath" "10" "9.61664910467715e-19" "1" "4.86455209423234e-05" "C-compound and carbohydrate metabolism" "FunCat" "10" "7.76047192598594e-08" "1" "0.00709907132863675" "glycolysis and gluconeogenesis" "FunCat" "10" "3.14461552689051e-11" "1" "0.00139826134258639" "Galactose metabolism" "KEGG" "10" "7.65362307757987e-18" "1" "6.13798345199661e-05" "Starch and sucrose metabolism" "KEGG" "10" "7.37942850596682e-14" "1" "0.000366299012457862" "MUTANT DATA SET" "quantDE" "1.423535" "maxDE" "2.655647431" "MUTANT DATA SET"