"Pathway" "Pathway.source" "Annotation.score" "p.value.score" "No.of.genes" "p.value.genes" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "ORGAN DATA SET" "quantDE" "5.992613" "maxDE" "7.292311" "ORGAN DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "69" "0.000502983528705244" "13" "0.0673173807350368" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "58" "3.07143313092202e-05" "8" "0.016974558604644" "biogenesis of chloroplast" "FunCat" "56" "4.44872579105138e-19" "9" "3.37365199106570e-05" "Carbon fixation" "KEGG" "55" "4.97286183595716e-26" "8" "2.56942669553482e-05" "Carotenoid and abscisic acid metabolism" "LitPath" "55" "1.45873227843692e-37" "8" "7.04240437393729e-08" "Intermediary Carbon Metabolism" "BioPath" "54" "0.0373886237171609" "9" "0.223012561195122" "Photosystems " "BioPath" "50" "0.00884359198730712" "8" "0.0669303432845692" "photosynthesis" "FunCat" "45" "2.02426192076276e-18" "7" "0.000100679792213301" "Carotenoid biosynthesis" "BioPath" "44" "1.06548630650015e-32" "5" "4.26399052805172e-06" "carotenoid biosynthesis" "AraCyc" "44" "2.47054444024592e-35" "5" "8.33029482180315e-07" "carotenid biosynthesis" "LitPath" "44" "1.90778366966503e-36" "5" "2.65697251109011e-06" "Chloroplastic protein turnover" "BioPath" "40" "1.04670502725637e-38" "7" "9.9967307014791e-09" "Calvin cycle" "AraCyc" "40" "8.17207830959505e-18" "6" "0.000773068556741954" "glycolysis and gluconeogenesis" "FunCat" "38" "0.000600961053551422" "6" "0.108763583420006" "Biosynthesis of steroids" "KEGG" "36" "6.11848412103076e-12" "5" "0.00085737603386511" "Miscellaneous acyl lipid metabolism" "AcylLipid" "36" "0.00120430968773350" "7" "0.139033638309689" "ATP-dependent proteolysis" "TAIR-GO" "34" "2.58360533236591e-36" "7" "2.11704566302159e-09" "photorespiration" "AraCyc" "34" "7.61206422423193e-18" "7" "5.19380009220703e-05" "Folding, Sorting and Degradation" "KEGG" "33" "7.20995816546947e-06" "4" "0.126815062426431" "additional photosystem II components" "BioPath" "31" "2.41278943845286e-05" "5" "0.00986530900996358" "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" "28" "0.0389498824791629" "3" "0.295036273470720" "jasmonic acid biosynthesis" "TAIR-GO" "28" "1.36388091173873e-12" "4" "0.00126538784456474" "photorespiration" "TAIR-GO" "28" "8.27030550325172e-35" "4" "1.81863476347163e-07" "jasmonic acid biosynthesis" "AraCyc" "28" "2.65849012498263e-13" "4" "0.000627019354597169" "Glycolysis / Gluconeogenesis" "KEGG" "28" "5.20405822270373e-06" "5" "0.0116838775083252" "starch metabolism" "BioPath" "26" "8.88188248434478e-07" "4" "0.0130420651801909" "energy" "FunCat" "26" "0" "4" "0" "Pentose phosphate pathway" "KEGG" "26" "1.49176933191584e-11" "4" "0.00318822090361313" "Chlorophyll a/b binding proteins" "BioPath" "24" "4.47268900973369e-07" "3" "0.0114046416464302" "photosystem I" "TAIR-GO" "24" "1.28210181605473e-21" "3" "0.000130263168512986" "glycine biosynthesis I" "AraCyc" "24" "1.50633284444428e-08" "5" "0.0077808749240894" "superpathway of serine and glycine biosynthesis II" "AraCyc" "24" "6.61998760695575e-15" "5" "0.000195413546157402" "degradation " "FunCat" "21" "3.30510870027132e-10" "4" "0.00167554102241169" "protein degradation " "FunCat" "21" "2.01325434902666e-13" "4" "0.00035955522579424" "ClpP protease complex " "BioPath" "20" "2.77712921783269e-18" "5" "8.40252890867833e-07" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "20" "4.14242352690673e-08" "2" "0.0220099592739970" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "positive regulation of transcription" "TAIR-GO" "20" "9.70665257365793e-23" "2" "9.33293609090644e-05" "regulation of transcription" "TAIR-GO" "20" "0" "2" "0" "response to ethylene stimulus" "TAIR-GO" "20" "1.64938670847365e-15" "5" "1.75728066083811e-05" "gluconeogenesis" "AraCyc" "20" "0.00222350618539950" "3" "0.113265113036954" "Fructose and mannose metabolism" "KEGG" "20" "1.61705898640663e-05" "3" "0.0265804617782646" "Protein export" "KEGG" "20" "2.12693134301893e-10" "2" "0.0343003897255823" "Pyruvate metabolism" "KEGG" "20" "0.00602978121261506" "3" "0.103452510509334" "Thylakoid biogenesis and photosystem assembly" "BioPath" "18" "1.16308676656221e-09" "2" "0.00333300278403567" "carotene biosynthesis" "TAIR-GO" "18" "7.99490117964099e-20" "2" "9.33293609090644e-05" "lipid biosynthesis" "TAIR-GO" "18" "1.39711795814047e-13" "2" "0.000872244577710804" "glycosylglyceride biosynthesis" "AraCyc" "18" "1.72325931522105e-10" "2" "0.00214509581403258" "xanthophyll cycle" "AraCyc" "18" "0" "2" "0" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "18" "0.020148780476644" "2" "0.278016090299667" "Synthesis of membrane lipids in plastids" "AcylLipid" "18" "0.000156586356140864" "2" "0.0335746111635912" "photosystem II" "TAIR-GO" "17" "1.66017095358948e-15" "2" "0.000872244577710804" "lipoxygenase pathway" "AraCyc" "16" "1.34668022805242e-07" "2" "0.0115729273731853" "starch degradation" "AraCyc" "16" "2.84243927788914e-07" "3" "0.00268405841046228" "C-compound and carbohydrate utilization " "FunCat" "16" "0" "2" "0" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "16" "0" "3" "0" "transport " "FunCat" "16" "8.82290124405783e-24" "3" "0" "Nitrogen metabolism" "KEGG" "16" "0.000763074820167233" "3" "0.00762769539759966" "C-compound, carbohydrate catabolism" "FunCat" "15" "0.000161434696889249" "4" "0.0126390096752298" "aromatic amino acid family biosynthesis" "TAIR-GO" "14" "0.000107845230724878" "2" "0.0234954457415592" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "14" "9.58207678604666e-06" "2" "0.0151757239172329" "response to water deprivation" "TAIR-GO" "14" "0" "2" "0" "cysteine biosynthesis I" "AraCyc" "14" "0.026388408123886" "5" "0.00477114423671336" "cysteine biosynthesis II" "AraCyc" "14" "3.8778287917973e-06" "5" "0.00025542707679679" "lactose degradation IV" "AraCyc" "14" "2.14363636015983e-13" "2" "0.00214509581403258" "sucrose biosynthesis" "AraCyc" "14" "0.000186101339599951" "2" "0.0471195462807595" "Fatty acid metabolism" "KEGG" "14" "0.00385066166939631" "2" "0.051410621541362" "Glyoxylate and dicarboxylate metabolism" "KEGG" "14" "5.04523647807947e-05" "3" "0.00468586678935201" "chorismate biosynthesis" "LitPath" "14" "2.15971945090129e-05" "2" "0.0243056327445256" "Glycine, serine and threonine metabolism" "KEGG" "13" "0.00155839066376975" "2" "0.0592160651367624" "Protein folding and associated processing" "KEGG" "13" "1.11036521708589e-05" "2" "0.0257453941856019" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "12" "4.96959757359832e-11" "3" "0.000130263168512986" "cyanate degradation" "AraCyc" "12" "1.76779885504183e-09" "2" "0.0145947604775286" "formaldehyde assimilation I (serine pathway)" "AraCyc" "12" "0.0317278380668163" "2" "0.153836543395881" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "12" "0.000159074189885471" "2" "0.0135939202031142" "pentose-phosphate pathway " "FunCat" "12" "0.000467293097106291" "2" "0.0341936595668472" "Glycerolipid metabolism" "KEGG" "12" "0.00694136777224873" "2" "0.0477100883006178" "Ion channels" "KEGG" "12" "0.000173797274944622" "4" "0.00693597771058272" "Ligand-Receptor Interaction" "KEGG" "12" "0.000230044821829410" "4" "0.00821687438226647" "Photosynthesis" "KEGG" "11" "0.00650826195411588" "2" "0.0477100883006178" "Delta-pH pathway" "BioPath" "10" "1.04888825223769e-08" "1" "0.00671680091338286" "ERD1 protease (ClpC-like)" "BioPath" "10" "0" "1" "0" "FtsH protease (many homologues / subcellular localization ambiguous)" "BioPath" "10" "0" "1" "0" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "10" "0.000133594318130853" "1" "0.0305134862785145" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "3.79168317231666e-07" "1" "0.0117443529330847" "cytochrome b6f complex" "TAIR-GO" "10" "1.54835099888737e-06" "1" "0.027645320396656" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "galactolipid biosynthesis" "TAIR-GO" "10" "9.75822599483772e-06" "1" "0.0189924251700007" "glucosinolate biosynthesis" "TAIR-GO" "10" "0.000813948882914994" "1" "0.0486107052279881" "hypersensitive response" "TAIR-GO" "10" "1.45486074660315e-05" "1" "0.027645320396656" "lipid transport" "TAIR-GO" "10" "7.92708014410237e-06" "1" "0.0375618832041892" "lipoic acid metabolism" "TAIR-GO" "10" "0" "1" "0" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "10" "4.7970743095287e-08" "1" "0.0117443529330847" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "response to jasmonic acid stimulus" "TAIR-GO" "10" "2.5515631871087e-05" "1" "0.0375618832041892" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "galactose degradation I" "AraCyc" "10" "2.29809020960023e-08" "1" "0.0310826538401112" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "5.68552751160448e-05" "1" "0.0982454377229125" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "leucine biosynthesis" "AraCyc" "10" "0.000225381982632734" "1" "0.139615260968676" "mannitol degradation" "AraCyc" "10" "0.00562960703744598" "2" "0.0819445961388236" "peptidoglycan biosynthesis" "AraCyc" "10" "3.30245124277599e-07" "1" "0.0403340574472109" "serine biosynthesis" "AraCyc" "10" "4.55522709605844e-07" "4" "2.22916428165739e-06" "sorbitol degradation" "AraCyc" "10" "0.00760628421566006" "2" "0.089940599280275" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "sucrose degradation III" "AraCyc" "10" "0.00149098622317660" "1" "0.139615260968676" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "8.23337220333588e-06" "1" "0.0310826538401112" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "10" "0.000157398570269793" "2" "0.0111524973875308" "C-compound, carbohydrate anabolism" "FunCat" "10" "0.000377229128940011" "1" "0.139006742458674" "electron transport and membrane-associated energy conservation " "FunCat" "10" "8.0536829889354e-07" "1" "0.0365460829380078" "stress response" "FunCat" "10" "0" "1" "0" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.00770166405682117" "2" "0.0231848691636789" "Fluorene degradation" "KEGG" "10" "0.000145671178686437" "2" "0.00548903788075403" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "0.000521971634555363" "2" "0.00791262076403128" "Valine, leucine and isoleucine biosynthesis" "KEGG" "10" "0.00913210159729141" "1" "0.179905403805575" "abscisic acid biosynthesis" "LitPath" "10" "1.25136511228821e-05" "2" "0.00454226636014474" "MEP (methylerythritol P) pathway, plastids" "LitPath" "10" "0.000214502353892077" "2" "0.00659538468985223" "oxylipin pathway" "LitPath" "10" "1.93316816264767e-10" "1" "0.00215482598476851" "phenylpropanoid metabolism" "TAIR-GO" "9" "0.000253144357446008" "1" "0.027645320396656" "alanine biosynthesis II" "AraCyc" "9" "0.0391843817769146" "1" "0.276595764637469" "alanine degradation III" "AraCyc" "9" "3.02426810349765e-09" "1" "0.00495416306457993" "Alanine and aspartate metabolism" "KEGG" "9" "0.0292975853443746" "1" "0.179905403805575" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "light harvesting complex" "BioPath" "8" "0.000771005195148762" "1" "0.0305134862785145" "Transcription (chloroplast)" "BioPath" "8" "0.00387725263148484" "1" "0.041385679676306" "abscisic acid biosynthesis" "TAIR-GO" "8" "0.004169850044287" "1" "0.0736247724794071" "carotenoid biosynthesis" "TAIR-GO" "8" "0.00310470349121370" "1" "0.0486107052279881" "cellular response to phosphate starvation" "TAIR-GO" "8" "0.00127690294113007" "1" "0.0486107052279881" "glycolipid biosynthesis" "TAIR-GO" "8" "3.37598522182901e-05" "1" "0.0117443529330847" "response to osmotic stress" "TAIR-GO" "8" "1.04654418029606e-06" "1" "0.0117443529330847" "sugar mediated signaling" "TAIR-GO" "8" "0.000505065155403037" "1" "0.027645320396656" "sulfolipid biosynthesis" "TAIR-GO" "8" "2.24673602809807e-08" "1" "0.00207975996298495" "transcription initiation" "TAIR-GO" "8" "0.00226656000190806" "1" "0.0486107052279881" "xanthophyll biosynthesis " "TAIR-GO" "8" "0" "1" "0" "aerobic respiration" "FunCat" "8" "0.0209035856763757" "1" "0.093214777483462" "respiration" "FunCat" "8" "0.0209035856763757" "1" "0.093214777483462" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "proton gradient regulation" "BioPath" "7" "0" "1" "0" "photosynthetic electron transport" "TAIR-GO" "7" "0.000545947640983166" "1" "0.027645320396656" "photosynthetic electron transport in photosystem I" "TAIR-GO" "7" "8.28483216624462e-06" "1" "0.00605262116713671" "photosystem II assembly" "TAIR-GO" "7" "1.82694858177572e-06" "1" "0.00605262116713671" "photosystem II stabilization" "TAIR-GO" "7" "2.55895665460930e-07" "1" "0.00207975996298495" "STRESS DATA SET" "quantDE" "1.84787" "maxDE" "8.145833" "STRESS DATA SET" "Thylakoid biogenesis and photosystem assembly" "BioPath" "10" "0" "1" "0" "cytochrome b6f complex" "TAIR-GO" "10" "1.04441678280036e-22" "1" "2.33363123655411e-05" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "electron transport and membrane-associated energy conservation " "FunCat" "10" "2.34206760700350e-21" "1" "2.22201468914168e-05" "energy" "FunCat" "10" "5.76649947145827e-27" "1" "1.85406099883713e-06" "transport " "FunCat" "10" "5.76649947145827e-27" "1" "1.85406099883713e-06" "HORMONE DATA SET" "quantDE" "2.526706" "maxDE" "7.3770525" "HORMONE DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "46" "7.18914431156322e-12" "6" "0.00501110297232653" "Pyruvate metabolism" "KEGG" "28" "2.22684040602721e-06" "4" "0.0205478811791115" "Glutathione metabolism" "BioPath" "26" "2.27657585951278e-10" "4" "0.00182393004537174" "Intermediary Carbon Metabolism" "BioPath" "24" "0.000781746871762853" "3" "0.149437107449863" "response to water deprivation" "TAIR-GO" "24" "0" "3" "0" "Miscellaneous acyl lipid metabolism" "AcylLipid" "24" "8.16303212338888e-07" "4" "0.10039546903035" "beta-Alanine metabolism" "KEGG" "23" "7.56962359313964e-15" "3" "0.000821015802214204" "Glutathione metabolism" "KEGG" "22" "1.57277785649800e-07" "3" "0.0131172337308230" "Urea cycle and metabolism of amino groups" "KEGG" "22" "2.67063752428987e-13" "3" "0.00168325858346382" "Prolin/Hydroxyproline from glutamate" "BioPath" "20" "2.43184112231352e-24" "2" "0.000237339736513983" "hyperosmotic salinity response" "TAIR-GO" "20" "7.53050653934452e-21" "2" "0.000479787494775837" "proline biosynthesis" "TAIR-GO" "20" "1.19377696068193e-26" "2" "1.71385606958670e-05" "response to abscisic acid stimulus" "TAIR-GO" "20" "9.7482586221128e-19" "2" "0.000859587784907718" "amino acid metabolism" "FunCat" "20" "0.00152275016255457" "3" "0.0413569135093395" "Arginine and proline metabolism" "KEGG" "20" "5.34998162216178e-07" "3" "0.0131172337308230" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "19" "0.00241063830403390" "3" "0.0223229405827975" "Basal transcription factors" "KEGG" "19" "3.93004409035854e-11" "3" "0.00689640705217451" "Transcription" "KEGG" "19" "0.000239902338934350" "3" "0.0891851824162638" "Butanoate metabolism" "KEGG" "18" "1.11928729013018e-08" "2" "0.016856291324185" "Glycolysis / Gluconeogenesis" "KEGG" "18" "0.0151928294469846" "2" "0.241273411801672" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "16" "0.00271050726003825" "2" "0.138275647075254" "Gluconeogenesis from lipids in seeds" "BioPath" "15" "0.000295678343773491" "2" "0.0588551841237397" "Nucleotide Metabolism" "KEGG" "15" "0.0352909985237217" "2" "0.235347896371071" "Pantothenate and CoA biosynthesis" "KEGG" "15" "1.26853774984223e-08" "2" "0.00904375945334597" "Pyrimidine metabolism" "KEGG" "15" "3.03974807023861e-05" "2" "0.0572297089518132" "toxin catabolism" "TAIR-GO" "14" "3.59538193880514e-08" "3" "0.00607113412485629" "phenylalanine degradation I" "AraCyc" "14" "2.91496880017750e-07" "3" "0.00262386065154743" "threonine degradation" "AraCyc" "14" "1.62438815081175e-11" "5" "4.01691087614517e-06" "Carotenoid and abscisic acid metabolism" "LitPath" "14" "3.79144238516165e-10" "2" "0.00190570315857419" "carbon monoxide dehydrogenase pathway" "AraCyc" "13" "9.6618116953895e-10" "2" "0.0227691348196472" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "13" "9.5738913356444e-06" "3" "0.00438031586483277" "aspartate degradation I" "AraCyc" "12" "5.32481795830275e-05" "2" "0.0186489720155192" "aspartate degradation II" "AraCyc" "12" "2.17108412201230e-07" "2" "0.00470628307299328" "methylglyoxal degradation" "AraCyc" "12" "7.27179577092182e-11" "4" "7.94237614254585e-06" "biosynthesis of phenylpropanoids" "FunCat" "12" "2.82151034994125e-06" "2" "0.00890492501835422" "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" "12" "2.82151034994125e-06" "2" "0.00890492501835422" "Glycerolipid metabolism" "KEGG" "12" "0.00487426144611103" "2" "0.0352546060259771" "Tyrosine metabolism" "KEGG" "12" "0.00713331866813071" "2" "0.0572297089518132" "Biosynthesis of prenyl diphosphates" "BioPath" "11" "0.00408801412699537" "2" "0.0192699754175543" "core phenylpropanoid metabolism" "BioPath" "10" "0.00455229961315212" "1" "0.117803954714555" "acyl-CoA binding" "TAIR-GO" "10" "5.60282870568411e-15" "1" "0.000274185583135094" "lignin biosynthesis" "TAIR-GO" "10" "5.95084097837676e-07" "1" "0.00916709070972442" "lipid transport" "TAIR-GO" "10" "1.31059173065475e-09" "1" "0.0054613734251367" "response to dessication" "TAIR-GO" "10" "1.70244907526582e-13" "1" "0.00161063734897204" "lignin biosynthesis" "AraCyc" "10" "0.0201864151775617" "1" "0.252842610735597" "biogenesis of chloroplast" "FunCat" "10" "0.0365987292910701" "2" "0.042228982932568" "cellular sensing and response " "FunCat" "10" "3.21308815329982e-18" "1" "0.00016071969455016" "chemoperception and response" "FunCat" "10" "3.21308815329982e-18" "1" "0.00016071969455016" "osmosensing" "FunCat" "10" "0" "1" "0" "Cysteine metabolism" "KEGG" "10" "0.00670095653812324" "2" "0.0207703818329683" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "0.00427708050750164" "2" "0.0228989319028256" "Propanoate metabolism" "KEGG" "10" "0.00388929991391922" "2" "0.0274994505207029" "Sulfur metabolism" "KEGG" "10" "0.00699274944483292" "2" "0.0118353286595273" "Valine, leucine and isoleucine biosynthesis" "KEGG" "10" "0.00670095653812324" "1" "0.148831102992624" "Valine, leucine and isoleucine degradation" "KEGG" "10" "0.0131505337754840" "2" "0.0409873288282784" "Phenylpropanoid pathway" "LitPath" "10" "0.0103815990528239" "1" "0.282045357983028" "fatty acid beta oxidation complex" "BioPath" "9" "1.50880469436810e-05" "1" "0.0331364416453533" "auxin biosynthesis" "TAIR-GO" "9" "1.00866611182641e-10" "1" "0.00161063734897204" "development" "TAIR-GO" "9" "0.0232363991376744" "1" "0.121212107907583" "flower development" "TAIR-GO" "9" "4.04939160385285e-09" "1" "0.00265615909945578" "histone methylation" "TAIR-GO" "9" "0" "1" "0" "seed germination" "TAIR-GO" "9" "4.67780844127289e-18" "1" "0" "fatty acid oxidation pathway" "AraCyc" "9" "0.000763573057205423" "1" "0.0644337903026346" "IAA biosynthesis" "AraCyc" "9" "3.29994856693595e-05" "1" "0.0274590296568567" "isoleucine degradation I" "AraCyc" "9" "0.000763573057205423" "1" "0.0969672465039517" "isoleucine degradation III" "AraCyc" "9" "1.91974358907152e-06" "1" "0.0274590296568567" "leucine degradation I" "AraCyc" "9" "0.000763573057205423" "1" "0.0969672465039517" "leucine degradation II" "AraCyc" "9" "1.91974358907152e-06" "1" "0.0274590296568567" "valine degradation I" "AraCyc" "9" "0.000604915707664851" "1" "0.171680605458370" "valine degradation II" "AraCyc" "9" "1.44771874597221e-06" "1" "0.0527101789137938" "oxidation of fatty acids " "FunCat" "9" "6.75713904718458e-18" "1" "0.00016071969455016" "Carotenoid biosynthesis" "BioPath" "8" "1.32320475470465e-05" "1" "0.00863858786813682" "Thylakoid biogenesis and photosystem assembly" "BioPath" "8" "8.64438017764613e-07" "1" "0.00340963857462499" "abscisic acid biosynthesis" "TAIR-GO" "8" "6.91644775190147e-06" "1" "0.0113389165134616" "response to osmotic stress" "TAIR-GO" "8" "6.07580126349641e-10" "1" "0.00161063734897204" "sugar mediated signaling" "TAIR-GO" "8" "5.52840719435345e-07" "1" "0.00394236978202865" "xanthophyll biosynthesis " "TAIR-GO" "8" "0" "1" "0" "4-hydroxyproline degradation" "AraCyc" "8" "3.42724424514914e-06" "1" "0.0232109773567870" "arginine degradation IX" "AraCyc" "8" "3.42724424514914e-06" "1" "0.0274590296568567" "carotenoid biosynthesis" "AraCyc" "8" "0.000170015975455927" "1" "0.0192638651067223" "cysteine biosynthesis I" "AraCyc" "8" "0.0190324471166251" "3" "0.0100616552017780" "cysteine biosynthesis II" "AraCyc" "8" "5.69966960081808e-05" "3" "0.00141591725568053" "proline degradation I" "AraCyc" "8" "0.000646341843183917" "1" "0.0834555524619201" "proline degradation II" "AraCyc" "8" "2.51657715923225e-06" "1" "0.0232109773567870" "tyrosine degradation" "AraCyc" "8" "7.58807207931725e-07" "2" "0.00110988347622829" "xanthophyll cycle" "AraCyc" "8" "3.9102948260696e-11" "1" "0.000480299441858925" "energy" "FunCat" "8" "1.80892327061454e-12" "1" "0.00047823657344309" "energy conversion and regeneration " "FunCat" "8" "7.85957342255953e-14" "1" "0.00047823657344309" "1,2-Dichloroethane degradation" "KEGG" "8" "2.85280216560818e-10" "1" "0.00281209526148153" "Ascorbate and aldarate metabolism" "KEGG" "8" "0.0370949827775122" "1" "0.104345349405208" "Bile acid biosynthesis" "KEGG" "8" "0.00117243512601011" "1" "0.0473650269815259" "Histidine metabolism" "KEGG" "8" "0.00062476416286289" "1" "0.0646941138065414" "Limonene and pinene degradation" "KEGG" "8" "6.63555711811432e-09" "1" "0.00683015080866893" "Lysine degradation" "KEGG" "8" "0.000574365729849736" "1" "0.0837861131586207" "Tryptophan metabolism" "KEGG" "8" "0.0219019605727423" "1" "0.172306950976025" "carotenid biosynthesis" "LitPath" "8" "2.16691236484310e-06" "1" "0.00808229110743068" "histone acetylation" "TAIR-GO" "7" "0" "1" "0" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "response to light" "TAIR-GO" "7" "0.0231943137933768" "1" "0.126835459579614" "transcription factor TFIID complex" "TAIR-GO" "7" "0" "1" "0" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "7" "0.000684473851367336" "1" "0.0262308609251354" "MEP (methylerythritol P) pathway, plastids" "LitPath" "7" "1.55143887226059e-06" "1" "0.00536404767871026" "MUTANT DATA SET" "quantDE" "4.014051" "maxDE" "7.845798482" "MUTANT DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "46" "0.000381052214436425" "6" "0.144266881479178" "glycolysis and gluconeogenesis" "FunCat" "46" "6.66355431347354e-14" "6" "0.00289202340934067" "Intermediary Carbon Metabolism" "BioPath" "42" "9.68981594266927e-09" "5" "0.0468624182153542" "Photosystems " "BioPath" "40" "6.04272885186773e-10" "5" "0.00809414807024017" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "36" "0.000440568457805112" "5" "0.0587293482787532" "Glycolysis / Gluconeogenesis" "KEGG" "26" "4.26791588912999e-11" "3" "0.00823149458701913" "additional photosystem II components" "BioPath" "24" "4.36760936100933e-10" "3" "0.00385928694399821" "Translation factors" "KEGG" "20.5" "1.00903560476428e-08" "4" "0.00187578733942642" "photosynthesis" "FunCat" "20" "6.52975009663803e-07" "3" "0.00572032956975992" "protein synthesis" "FunCat" "20" "0.039012153782236" "3" "0.153618194126552" "Pyruvate metabolism" "KEGG" "20" "4.85198005088252e-07" "2" "0.0391686955131446" "Valine, leucine and isoleucine biosynthesis" "KEGG" "20" "5.40564895786021e-14" "2" "0.00397246832999247" "Gluconeogenesis from lipids in seeds" "BioPath" "18" "0.000345486791009821" "3" "0.0267452562428641" "isoprenoid biosynthesis " "FunCat" "18" "0.000332744766434383" "3" "0.0178607157228722" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "18" "5.90505891055983e-05" "3" "0.0110508525308530" "ATP synthase components" "BioPath" "16" "3.14682837486599e-14" "2" "0.000504399333518923" "Glutathione metabolism" "BioPath" "16" "0.00494834408789178" "3" "0.0280457014064817" "ATP synthesis coupled proton transport" "TAIR-GO" "16" "7.40166490175455e-17" "2" "0.000159420510504801" "photosystem I" "TAIR-GO" "16" "1.07384095090971e-15" "2" "0.000537705730357343" "photosystem II" "TAIR-GO" "16" "2.87067937892895e-18" "2" "0.000159420510504801" "proton transport" "TAIR-GO" "16" "7.40166490175455e-17" "2" "0.000159420510504801" "response to heat" "TAIR-GO" "16" "1.86831955007775e-11" "2" "0.00308215332528037" "acetate fermentation" "AraCyc" "16" "9.18188464887106e-07" "2" "0.0380720433157857" "Calvin cycle" "AraCyc" "16" "1.02628132891698e-09" "2" "0.00805014650493654" "fructose degradation (anaerobic)" "AraCyc" "16" "4.05287528223658e-07" "2" "0.0313303106497428" "gluconeogenesis" "AraCyc" "16" "4.10887958191414e-08" "2" "0.0128362264925837" "glyceraldehyde 3-phosphate degradation" "AraCyc" "16" "2.85018341503463e-13" "2" "0.00189594953058124" "glycerol degradation II" "AraCyc" "16" "6.65728605054506e-09" "2" "0.0128362264925837" "glycolysis I" "AraCyc" "16" "0.00235737280630603" "2" "0.165813476432573" "glycolysis IV" "AraCyc" "16" "4.50458986242101e-07" "2" "0.0326232564448764" "sorbitol fermentation" "AraCyc" "16" "1.01269848240936e-06" "2" "0.0352924136649829" "transport " "FunCat" "16" "1.30490710156245e-27" "2" "4.38701799510712e-06" "transport facilitation" "FunCat" "16" "0" "2" "4.38701799510712e-06" "Carbon fixation" "KEGG" "16" "1.66918968896649e-05" "2" "0.0301690644287738" "Translation (chloroplast)" "BioPath" "14" "3.83576625653783e-15" "2" "0.000152478034805851" "methionine degradation I" "AraCyc" "14" "1.04796345667758e-14" "2" "0.00014199824255139" "translation" "FunCat" "14" "1.27866880609286e-10" "2" "0.00409061659582205" "Selenoamino acid metabolism" "KEGG" "14" "2.84079493804166e-07" "2" "0.00361429940250913" "Glutathione metabolism" "KEGG" "12" "4.5774690341166e-05" "2" "0.0093648439207602" "Branched-chain amino acids from aspartate" "BioPath" "10" "0.000338807870512004" "1" "0.0659937438431173" "core phenylpropanoid metabolism" "BioPath" "10" "0.0317115586059144" "1" "0.1766539869725" "Cytochrome b6/f complex" "BioPath" "10" "1.06715701182874e-08" "1" "0.00939784118159035" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "10" "0.00187798136157196" "1" "0.0907673720719374" "cytochrome b6f complex" "TAIR-GO" "10" "5.12411532332128e-09" "1" "0.00928767975374433" "electron transport" "TAIR-GO" "10" "0.000654015458313326" "1" "0.0934060587653777" "glucosinolate biosynthesis" "TAIR-GO" "10" "5.29305880671242e-06" "1" "0.0167686987849871" "glycolysis" "TAIR-GO" "10" "1.52801921640963e-13" "1" "0.000662095868365994" "hypersensitive response" "TAIR-GO" "10" "5.75984497066557e-08" "1" "0.00928767975374433" "methylation-dependent chromatin silencing" "TAIR-GO" "10" "0" "1" "0" "nonphotochemical quenching" "TAIR-GO" "10" "6.58222868770448e-14" "1" "0.000662095868365994" "photosynthetic electron transport" "TAIR-GO" "10" "6.73062015025123e-09" "1" "0.00928767975374433" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "8.24822495065257e-16" "1" "0.000662095868365994" "posttranscriptional gene silencing" "TAIR-GO" "10" "0" "1" "0" "proton-transporting ATP synthase, catalytic core (sensu Eukaryota)" "TAIR-GO" "10" "0" "1" "0" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "response to oxidative stress" "TAIR-GO" "10" "2.19630232948281e-11" "1" "0.00629611805497277" "response to stress" "TAIR-GO" "10" "2.14812883520508e-09" "1" "0.00384143903718559" "response to sucrose stimulus" "TAIR-GO" "10" "5.12411532332128e-09" "1" "0.00928767975374433" "biosynthesis of proto- and siroheme" "AraCyc" "10" "0.000227520398737286" "1" "0.0742391960673736" "chlorophyll biosynthesis" "AraCyc" "10" "0.00189427631284354" "1" "0.111384354654208" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "leucine biosynthesis" "AraCyc" "10" "2.85983696756937e-09" "1" "0.0129122476104362" "aerobic respiration" "FunCat" "10" "3.34369818220492e-05" "1" "0.0249666533586573" "electron / hydrogen transport " "FunCat" "10" "1.76807769492282e-10" "1" "0.00392595342178007" "respiration" "FunCat" "10" "3.34369818220492e-05" "1" "0.0249666533586573" "transported compounds (substrates)" "FunCat" "10" "0" "1" "0" "Butanoate metabolism" "KEGG" "10" "7.28499288947883e-06" "1" "0.0278629381216103" "Fatty acid metabolism" "KEGG" "10" "0.000801932227554227" "1" "0.0491066536197488" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "2.10951278882743e-05" "1" "0.0344193849413304" "Methionine metabolism" "KEGG" "10" "2.68020733861528e-06" "1" "0.0182399369589203" "Photosynthesis" "KEGG" "10" "7.97112165075473e-05" "1" "0.0465223799148599" "Miscellaneous acyl lipid metabolism" "AcylLipid" "10" "0.000785436472446496" "1" "0.407412707803741" "Glucosinolate Metabolism" "LitPath" "10" "2.43512486244926e-08" "1" "0.0104168532914109" "Phenylpropanoid pathway" "LitPath" "10" "4.67320148657842e-05" "1" "0.147137437920518" "Early light-inducible proteins" "BioPath" "8" "6.16736531019672e-07" "1" "0.00560189402252651" "response to ethylene stimulus" "TAIR-GO" "8" "5.56019399516332e-06" "2" "0.00491547780404639" "de novo biosynthesis of purine nucleotides I" "AraCyc" "8" "0.041579321820102" "2" "0.0697944974552132" "nucleotide metabolism" "FunCat" "8" "0" "2" "0" "Purine metabolism" "KEGG" "8" "0.0355659290562316" "2" "0.024503116166371"