"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"ORGAN DATA SET"	"quantDE"	"4.386497"	"maxDE"	"6.107938"	"ORGAN DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"21"	"3.73116543127258e-09"	"3"	"0.0102293568762935"
"biogenesis of chloroplast"	"FunCat"	"18"	"1.77906846324471e-15"	"3"	"0.000203003747237344"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"10"	"1.04288945282552e-06"	"1"	"0.0327652822845532"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"7.4046596045488e-11"	"1"	"0.00195319736574836"
"aromatic amino acid family biosynthesis"	"TAIR-GO"	"10"	"1.4965756425311e-14"	"1"	"0.00129110488743421"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"10"	"1.52141873368730e-15"	"1"	"0.000940242643224858"
"amino acid metabolism"	"FunCat"	"10"	"0.000124840885358873"	"1"	"0.096140735475223"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"10"	"1.33755461791144e-08"	"1"	"0.0260340969455534"
"chorismate biosynthesis"	"LitPath"	"10"	"9.73327099341983e-13"	"1"	"0.00381496378686362"
"Shikimate pathway"	"LitPath"	"10"	"8.5204386316081e-08"	"1"	"0.0302362305959052"
"C-compound and carbohydrate metabolism"	"FunCat"	"9"	"0.0417155074495261"	"3"	"0.0401031411817628"
"ascorbic acid biosynthesis"	"BioPath"	"8"	"2.23835351367107e-08"	"1"	"0.00513312169200815"
"Chloroplastic protein turnover"	"BioPath"	"8"	"2.31377267665435e-11"	"2"	"2.50755015051073e-05"
"ClpP protease complex "	"BioPath"	"8"	"1.63067276373939e-13"	"2"	"9.66435520289237e-06"
"ATP-dependent proteolysis"	"TAIR-GO"	"8"	"1.82368420295198e-14"	"2"	"7.22879748026485e-06"
"degradation "	"FunCat"	"8"	"1.64357653147576e-09"	"2"	"0.000268898667872536"
"protein degradation "	"FunCat"	"8"	"7.09055097715925e-11"	"2"	"0.000102443333634979"
"Methane metabolism"	"KEGG"	"8"	"2.03080503830722e-07"	"2"	"0.0113853038320527"
"STRESS DATA SET"	"quantDE"	"0.1618543"	"maxDE"	"1.196898"	"STRESS DATA SET"
"nucleotide metabolism"	"FunCat"	"16"	"0"	"4"	"0"
"(deoxy)ribose phosphate degradation"	"AraCyc"	"14"	"7.35986522339506e-29"	"3"	"3.90390963408161e-09"
"pyrimidine nucleotide metabolism"	"FunCat"	"14"	"1.76035174483831e-18"	"3"	"8.4304324461052e-06"
"Nucleotide Metabolism"	"KEGG"	"14"	"1.00671648559190e-10"	"3"	"0.00124323011096797"
"Pyrimidine metabolism"	"KEGG"	"14"	"4.36789449674423e-15"	"3"	"0.000103516768439172"
"secondary metabolism"	"FunCat"	"11"	"1.33177161275527e-07"	"2"	"0.0128818330852131"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"10"	"0.00036835255543443"	"4"	"0.0234021442314499"
"gibberellic acid biosynthesis"	"TAIR-GO"	"10"	"1.79156516499931e-18"	"1"	"8.54208336035678e-05"
"gibberellin biosynthesis"	"AraCyc"	"10"	"1.53753764811134e-17"	"1"	"0.000294648665516002"
"plant / fungal specific systemic sensing and response "	"FunCat"	"10"	"5.7425639014122e-10"	"1"	"0.0104941494868285"
"plant hormonal regulation"	"FunCat"	"10"	"5.7425639014122e-10"	"1"	"0.0104941494868285"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"8.33741672838663e-12"	"1"	"0.00251254204533204"
"Gibberellin metabolism"	"LitPath"	"10"	"8.60523929906308e-08"	"1"	"0.0284351102070104"
"giberelin biosynthesis"	"LitPath"	"10"	"1.96047679296021e-09"	"1"	"0.0168992130638153"
"Intermediary Carbon Metabolism"	"BioPath"	"8"	"7.69074852411379e-05"	"2"	"0.0457460707779822"
"iron-sulfur cluster assembly"	"TAIR-GO"	"7"	"0"	"1"	"0"
"Nitrogen metabolism"	"KEGG"	"7"	"2.12211449937099e-05"	"1"	"0.0174567133318244"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"7"	"0.000172009372181737"	"2"	"0.00359552909893012"
"HORMONE DATA SET"	"quantDE"	"0.4666242"	"maxDE"	"1.9071143"	"HORMONE DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"91"	"9.4595696503999e-45"	"22"	"5.25857824690215e-10"
"pectin metabolism"	"BioPath"	"69"	"2.52880917705592e-61"	"18"	"6.36365457261746e-13"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"54"	"1.39357931283238e-39"	"6"	"1.05196182494212e-05"
"terpenoid metabolism"	"LitPath"	"54"	"1.96830105807779e-39"	"6"	"1.32314119411687e-05"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"44"	"7.90132844898936e-15"	"16"	"2.11374682913621e-07"
"Starch and sucrose metabolism"	"KEGG"	"42"	"6.07188157859774e-39"	"6"	"3.96108434335621e-06"
"sexual reproduction"	"TAIR-GO"	"20"	"0"	"5"	"0"
"monoterpene biosynthesis"	"LitPath"	"20"	"1.75031969038207e-18"	"2"	"0.000211266169627119"
"sucrose metabolism"	"BioPath"	"16"	"1.40870484604013e-13"	"2"	"0.00389714425893934"
"Galactose metabolism"	"KEGG"	"16"	"7.95684861717338e-15"	"2"	"0.00273329243818663"
"biogenesis of cell wall"	"FunCat"	"14"	"2.09636928593648e-09"	"6"	"1.69257171076598e-05"
"C-compound and carbohydrate utilization "	"FunCat"	"14"	"0"	"2"	"0"
"jasmonic acid biosynthesis"	"TAIR-GO"	"10"	"2.52119686990883e-08"	"1"	"0.0167090723217041"
"jasmonic acid mediated signaling pathway"	"TAIR-GO"	"10"	"0"	"1"	"0"
"jasmonic acid metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"monoterpenoid biosynthesis"	"TAIR-GO"	"10"	"1.75346185959695e-14"	"1"	"0.00064588290505865"
"N-terminal protein myristoylation"	"TAIR-GO"	"10"	"1.59917975313975e-10"	"1"	"0.00565858763458693"
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	"10"	"7.75580141650700e-12"	"1"	"0.00293711135528895"
"response to wounding"	"TAIR-GO"	"10"	"3.54101796880506e-07"	"1"	"0.0221408289696098"
"jasmonic acid biosynthesis"	"AraCyc"	"10"	"5.67345940149645e-14"	"1"	"0.00123356047904651"
"monoterpene biosynthesis"	"AraCyc"	"10"	"1.71324423109834e-21"	"1"	"2.48015760829959e-05"
"plant monoterpene biosynthesis"	"AraCyc"	"10"	"3.82515896900571e-24"	"1"	"8.28102485963663e-06"
"C-compound, carbohydrate catabolism"	"FunCat"	"10"	"1.39471340269433e-08"	"3"	"0.00201278203078898"
"Biosynthesis of steroids"	"KEGG"	"10"	"2.86237329358689e-05"	"1"	"0.0667666909389712"
"sequiterpene biosynthesis"	"LitPath"	"10"	"1.06731922868834e-11"	"1"	"0.000825437373197614"
"triterpene biosynthesis"	"LitPath"	"10"	"2.54359765161164e-05"	"1"	"0.0322123083013159"
"cellulose biosynthesis"	"AraCyc"	"8"	"1.18599942628672e-08"	"2"	"0.000256342585049871"
"lactose degradation IV"	"AraCyc"	"8"	"5.68033891077744e-17"	"2"	"7.21321198230021e-07"
"Oxidative phosphorylation"	"KEGG"	"8"	"0.000122321491018655"	"2"	"0.0290195207545438"
"Pentose and glucuronate interconversions"	"KEGG"	"8"	"4.57380122400442e-09"	"2"	"0.000306280610952806"
"MUTANT DATA SET"	"quantDE"	"2.827512"	"maxDE"	"8.776589344"	"MUTANT DATA SET"
"Lipid signaling"	"AcylLipid"	"21"	"3.51680461724616e-06"	"7"	"0.00104345737593806"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"19"	"0.00104748795249429"	"3"	"0.0346442042218112"
"indoleacetic acid biosynthesis"	"TAIR-GO"	"18"	"1.78471202227329e-22"	"2"	"0.000101939604632803"
"IAA biosynthesis"	"AraCyc"	"18"	"2.86359695889240e-12"	"2"	"0.00217057879929101"
"IAA biosynthesis I"	"AraCyc"	"18"	"3.3086908229376e-15"	"2"	"0.000871003719318033"
"plant / fungal specific systemic sensing and response "	"FunCat"	"18"	"7.51203814051344e-14"	"2"	"0.0031443811026421"
"plant hormonal regulation"	"FunCat"	"18"	"7.51203814051344e-14"	"2"	"0.0031443811026421"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"17"	"1.06719043693346e-05"	"3"	"0.0180467561886745"
"acetyl-CoA assimilation"	"AraCyc"	"16"	"3.56546045945454e-06"	"2"	"0.0352683093858478"
"glyoxylate cycle"	"AraCyc"	"16"	"1.85689812177024e-07"	"2"	"0.0145802798808602"
"serine-isocitrate lyase pathway"	"AraCyc"	"16"	"0.000134747743128694"	"2"	"0.0818613958649419"
"TCA cycle -- aerobic respiration"	"AraCyc"	"16"	"7.86765504783886e-05"	"2"	"0.0906079134904739"
"TCA cycle variation VII"	"AraCyc"	"16"	"0.0101185120779389"	"2"	"0.213204934921524"
"TCA cycle variation VIII"	"AraCyc"	"16"	"0.000223119879541693"	"2"	"0.0997284577224348"
"Citrate cycle (TCA cycle)"	"KEGG"	"16"	"2.64101887137567e-07"	"2"	"0.0351602616221513"
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	"16"	"2.02332259862596e-09"	"2"	"0.0127160862274802"
"Reductive carboxylate cycle (CO2 fixation)"	"KEGG"	"16"	"1.17937359522958e-11"	"2"	"0.00489529253132067"
"Carbon fixation"	"KEGG"	"15"	"0.000397349927919035"	"2"	"0.107149345417518"
"ATP-dependent proteolysis"	"TAIR-GO"	"14"	"8.24573916233609e-15"	"2"	"0.00153019351267663"
"development"	"TAIR-GO"	"13"	"0.000292585323776891"	"2"	"0.0448493141740809"
"glycine biosynthesis I"	"AraCyc"	"13"	"2.74338838240815e-05"	"3"	"0.0158169586756270"
"photorespiration"	"AraCyc"	"13"	"6.55628775048979e-06"	"3"	"0.00694174302685397"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"13"	"1.27075790144969e-08"	"3"	"0.00134857873807434"
"Ascorbate and aldarate metabolism"	"KEGG"	"13"	"9.60049025158582e-07"	"3"	"0.000863537598627955"
"Benzoate degradation via CoA ligation"	"KEGG"	"13"	"0.0027502862599544"	"3"	"0.0717750294335272"
"Fluorene degradation"	"KEGG"	"13"	"1.92046096665604e-09"	"3"	"0.000106524498925286"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"13"	"1.32056579760285e-08"	"3"	"0.000180821720414402"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"13"	"0.00235172571398215"	"3"	"0.0972570413013945"
"Tryptophan metabolism"	"KEGG"	"13"	"3.0231587508293e-07"	"2"	"0.021541448375548"
"response to ethylene stimulus"	"TAIR-GO"	"12"	"7.1184202100314e-12"	"3"	"0.000186895276107808"
"leucine biosynthesis"	"AraCyc"	"12"	"1.30218049277644e-08"	"2"	"0.00517196796391137"
"isoleucine degradation I"	"AraCyc"	"11"	"0.000239017910438986"	"2"	"0.0163929022125189"
"isoleucine degradation III"	"AraCyc"	"11"	"1.70421938787192e-07"	"2"	"0.00217057879929101"
"leucine degradation I"	"AraCyc"	"11"	"0.000239017910438986"	"2"	"0.0163929022125189"
"leucine degradation II"	"AraCyc"	"11"	"1.70421938787192e-07"	"2"	"0.00217057879929101"
"valine degradation I"	"AraCyc"	"11"	"0.000180639956403137"	"2"	"0.041194221240066"
"valine degradation II"	"AraCyc"	"11"	"1.20798892342198e-07"	"2"	"0.00617765039258469"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"11"	"0.0056699347548047"	"2"	"0.0998231583042268"
"Nitrogen metabolism"	"KEGG"	"11"	"0.00117539171664549"	"2"	"0.0183086815906953"
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	"11"	"2.20985110965336e-05"	"2"	"0.0440824471887862"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"11"	"0.0345495903827183"	"2"	"0.258308330471049"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"1.62304371551777e-13"	"1"	"0.00065931185894712"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"0.00176681742004308"	"1"	"0.0873624993134167"
"Chloroplastic protein turnover"	"BioPath"	"10"	"7.00499640058977e-10"	"1"	"0.0133089695963365"
"ERD1 protease (ClpC-like)"	"BioPath"	"10"	"0"	"1"	"0"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"10"	"9.70048066813158e-05"	"1"	"0.0740183181000013"
"brassinosteroid biosynthesis"	"TAIR-GO"	"10"	"4.03824394751706e-06"	"1"	"0.0281060322773344"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"2.73557463328318e-12"	"1"	"0.00145270470962557"
"growth"	"TAIR-GO"	"10"	"0.00042755257365472"	"1"	"0.0993029416226143"
"hypersensitive response"	"TAIR-GO"	"10"	"2.11271549674864e-09"	"1"	"0.00695767821817189"
"steroid biosynthesis"	"TAIR-GO"	"10"	"4.03824394751706e-06"	"1"	"0.0281060322773344"
"unidimensional cell growth"	"TAIR-GO"	"10"	"4.03824394751706e-06"	"1"	"0.0327489042841902"
"brassinosteroid biosynthesis I"	"AraCyc"	"10"	"7.91122531391966e-05"	"1"	"0.0748512947912561"
"brassinosteroid biosynthesis II"	"AraCyc"	"10"	"1.78023366417553e-07"	"1"	"0.0292276943737053"
"C-compound and carbohydrate glyoxylate cycle "	"FunCat"	"10"	"2.35944304992909e-15"	"1"	"0.00074945552441752"
"glyoxylate cycle"	"FunCat"	"10"	"2.35944304992909e-15"	"1"	"0.00074945552441752"
"stress response"	"FunCat"	"10"	"0"	"1"	"0"
"ATP synthesis"	"KEGG"	"10"	"0.000475209506581843"	"2"	"0.0329963465681328"
"Galactose metabolism"	"KEGG"	"10"	"0.000316805377794096"	"2"	"0.0168018619265458"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"10"	"0.00668929277929297"	"1"	"0.216180112522729"
"chlorophyll catabolism"	"LitPath"	"10"	"7.71182978790109e-13"	"1"	"0.00196266457498539"
"fatty acid beta oxidation complex"	"BioPath"	"9"	"8.22210789075083e-06"	"1"	"0.0423714587948218"
"Phytic acid biosynthesis"	"BioPath"	"9"	"7.0763047044869e-06"	"1"	"0.0459717198973148"
"acetate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"flower development"	"TAIR-GO"	"9"	"3.36614890464164e-09"	"1"	"0.00470534708244814"
"glyoxylate cycle"	"TAIR-GO"	"9"	"0"	"1"	"0"
"phosphoinositide biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"photorespiration"	"TAIR-GO"	"9"	"3.41575538204526e-10"	"1"	"0.00470534708244814"
"response to pathogenic bacteria"	"TAIR-GO"	"9"	"2.00312761157717e-09"	"1"	"0.00470534708244814"
"seed germination"	"TAIR-GO"	"9"	"3.84774172855933e-18"	"1"	"0"
"alanine biosynthesis II"	"AraCyc"	"9"	"0.000758822122138952"	"1"	"0.109951114385089"
"alanine degradation III"	"AraCyc"	"9"	"1.01094646164338e-11"	"1"	"0.00151848419648186"
"fatty acid oxidation pathway"	"AraCyc"	"9"	"0.00305954289553980"	"1"	"0.0683519967174501"
"cell cycle "	"FunCat"	"9"	"1.32235476755462e-10"	"1"	"0.00664392481738836"
"cell cycle and DNA processing"	"FunCat"	"9"	"4.34823845163233e-12"	"1"	"0.00503440218443674"
"cytokinesis (cell division) /septum formation"	"FunCat"	"9"	"0"	"1"	"0"
"DNA processing "	"FunCat"	"9"	"2.81671526499704e-16"	"1"	"0.00244718609151015"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"9"	"0.00706330524862202"	"1"	"0.139531032929334"
"oxidation of fatty acids "	"FunCat"	"9"	"1.11462607845683e-17"	"1"	"0.000252412340799931"
"Alanine and aspartate metabolism"	"KEGG"	"9"	"0.000910763821554407"	"1"	"0.103657646149610"
"Cyanoamino acid metabolism"	"KEGG"	"9"	"2.2801412828492e-05"	"1"	"0.0715057217843856"
"Glutamate metabolism"	"KEGG"	"9"	"0.0226694931347048"	"1"	"0.17638093136557"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"8"	"9.00023327688286e-06"	"2"	"0.00260649244895163"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"8"	"4.82693573388533e-07"	"1"	"0.00444161566275487"
"transport "	"FunCat"	"8"	"2.81933658215277e-12"	"2"	"3.89074899113574e-06"
"auxin biosynthesis"	"TAIR-GO"	"7"	"4.96727146880883e-08"	"1"	"0.00286398409132200"
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	"7"	"0"	"1"	"0"
"response to water deprivation"	"TAIR-GO"	"7"	"0"	"2"	"0"
"toxin catabolism"	"TAIR-GO"	"7"	"0.00356540219010025"	"4"	"0.00281375758071813"
"mannosyl-chito-dolichol biosynthesis"	"AraCyc"	"7"	"2.19362902710962e-09"	"1"	"0.00151848419648186"
"N-Glycan biosynthesis"	"KEGG"	"7"	"6.90934673867626e-05"	"1"	"0.0394583139289863"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"7"	"0.00452711438608355"	"2"	"0.0154457160615988"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"7"	"0.0047082310950257"	"1"	"0.0951191083380835"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"7"	"1.50333018722389e-05"	"1"	"0.0214180303330172"