"Pathway" "Pathway.source" "Annotation.score" "p.value.score" "No.of.genes" "p.value.genes" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "ORGAN DATA SET" "quantDE" "5.815212" "maxDE" "6.5854462" "ORGAN DATA SET" "Glucosinolate Metabolism" "LitPath" "130" "3.25473917894079e-161" "13" "7.91738348653097e-20" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "118" "5.53982068694928e-42" "16" "9.71707887079373e-08" "Glutathione metabolism" "BioPath" "70" "3.26860625930395e-35" "10" "2.91912894791170e-07" "Phenylpropanoid Metabolism" "BioPath" "52" "5.15492297467943e-06" "6" "0.103316025131238" "glucosinolate biosynthesis" "TAIR-GO" "50" "1.79118427901047e-55" "5" "1.69443627422165e-08" "sulfate assimilation III" "AraCyc" "46" "6.10853190039612e-22" "6" "2.64572886209718e-05" "amino acid metabolism" "FunCat" "44" "7.1781574872442e-16" "6" "0.00108955720835785" "Selenoamino acid metabolism" "KEGG" "40" "1.13938595698261e-21" "5" "2.87950373830815e-05" "Sulfur metabolism" "KEGG" "40" "8.67659270158298e-25" "5" "4.14060799529717e-06" "Lipid signaling" "AcylLipid" "40" "9.31688398660177e-08" "8" "0.00661086913663132" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "39" "1.04285752645089e-12" "4" "0.0562802765075677" "gamma-Hexachlorocyclohexane degradation" "KEGG" "33" "1.37379573739727e-23" "4" "1.86103896369317e-05" "Flavonoid and anthocyanin metabolism" "BioPath" "30" "1.29840056572536e-14" "3" "0.0379821262912422" "cysteine biosynthesis I" "AraCyc" "30" "1.40526925839786e-12" "4" "0.00426962918944728" "glucosinolate biosynthesis from homomethionine" "AraCyc" "30" "3.43371706331839e-32" "3" "2.87260377270311e-06" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "30" "4.3797837612031e-37" "3" "5.87240119372351e-07" "glucosinolate biosynthesis from tryptophan" "AraCyc" "30" "0" "3" "0" "Ascorbate and aldarate metabolism" "KEGG" "29" "7.17681186245389e-15" "3" "0.00165134527620223" "Fluorene degradation" "KEGG" "29" "3.01735418673261e-21" "3" "0.000209214584228196" "Branched-chain amino acids from aspartate" "BioPath" "28" "6.78453077756059e-16" "4" "0.000219940666225943" "leucine biosynthesis" "AraCyc" "28" "2.12873641931256e-24" "4" "5.4184969730418e-05" "Glutamate metabolism" "KEGG" "28" "2.37623167793697e-08" "3" "0.0120941261979" "Miscellaneous acyl lipid metabolism" "AcylLipid" "26" "0.00786311593697252" "6" "0.107526999826284" "Pyruvate metabolism" "KEGG" "24" "0.001159398558144" "3" "0.0639479472833664" "Valine, leucine and isoleucine biosynthesis" "KEGG" "24" "1.39096455877334e-10" "3" "0.00373186615629436" "jasmonic acid biosynthesis" "TAIR-GO" "22" "1.75135917598059e-10" "3" "0.00216895429941933" "jasmonic acid biosynthesis" "AraCyc" "22" "1.07721339702630e-10" "3" "0.00132446665989696" "Glycan Biosynthesis and Metabolism" "KEGG" "22" "9.21391125441927e-05" "3" "0.0426044070135702" "indoleacetic acid biosynthesis" "TAIR-GO" "20" "2.56277451798801e-20" "2" "0.000260129843123797" "tryptophan biosynthesis" "TAIR-GO" "20" "3.46436424630248e-09" "2" "0.0136065766055236" "tryptophan catabolism" "TAIR-GO" "20" "0" "2" "0" "IAA biosynthesis" "AraCyc" "20" "1.94231152937445e-11" "2" "0.00392886008943942" "IAA biosynthesis I" "AraCyc" "20" "1.19925436228750e-14" "2" "0.00159537332677022" "nitrogen and sulfur metabolism" "FunCat" "20" "1.53503102960782e-13" "2" "0.00365773745549047" "Cysteine metabolism" "KEGG" "20" "9.46522363225874e-08" "3" "0.00221884141736208" "Glycerolipid metabolism" "KEGG" "20" "3.194821758363e-06" "3" "0.00470090761002585" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "20" "0.000152076021552793" "2" "0.0608443970018974" "Purine metabolism" "KEGG" "20" "0.000830983407485185" "2" "0.131509163183166" "alanine biosynthesis II" "AraCyc" "19" "5.58924758024277e-09" "2" "0.0315438292409719" "response to water deprivation" "TAIR-GO" "18" "0" "2" "0" "C-compound and carbohydrate utilization " "FunCat" "18" "0" "3" "0" "Alanine and aspartate metabolism" "KEGG" "18" "3.30162669083299e-06" "2" "0.0264945159497733" "toxin catabolism" "TAIR-GO" "16" "3.21784275860942e-06" "4" "0.0107677176958936" "dissimilatory sulfate reduction" "AraCyc" "16" "5.93043896915438e-11" "2" "0.000692681127621521" "lipoxygenase pathway" "AraCyc" "16" "4.36432923090258e-09" "2" "0.00392886008943942" "nitrogen and sulfur utilization " "FunCat" "16" "2.21393473497769e-14" "2" "0.000586168346746352" "Ion channels" "KEGG" "16" "1.99702056412955e-06" "5" "0.000492698692899996" "Ligand-Receptor Interaction" "KEGG" "16" "2.95481847519688e-06" "5" "0.000613594274095662" "Nitrogen metabolism" "KEGG" "16" "0.00239206196729642" "2" "0.0288011045719469" "cellulose biosynthesis" "BioPath" "14" "0.00563446374682547" "2" "0.0863258329464229" "Fructose and mannose metabolism" "KEGG" "14" "0.0175268195634896" "2" "0.0715983146259258" "Glutathione metabolism" "KEGG" "14" "0.00892684755227738" "3" "0.0111443441086954" "tryptophan biosynthesis" "AraCyc" "12" "0.00211365430363179" "2" "0.034948179002362" "calmodulin binding" "TAIR-GO" "11" "7.67971446631991e-06" "2" "0.00624323838050624" "Glutamate/glutamine from nitrogen fixation" "BioPath" "10" "0.000307870531366716" "1" "0.0355452189290663" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "10" "0.0223213595285673" "1" "0.154370557949826" "Transcriptional regulators (chloroplast)" "BioPath" "10" "1.22473457593719e-12" "1" "0.000537945497672127" "aging" "TAIR-GO" "10" "4.71111245077215e-06" "1" "0.0228523509207035" "cysteine biosynthesis" "TAIR-GO" "10" "1.8883431097978e-09" "1" "0.00270306392895743" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "fatty acid biosynthesis" "TAIR-GO" "10" "0.00332024783734794" "1" "0.0747528141372112" "indole glucosinolate biosynthesis" "TAIR-GO" "10" "0" "1" "0" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "lignin biosynthesis" "TAIR-GO" "10" "0.000151953767622221" "1" "0.0288097986765926" "positive regulation of transcription" "TAIR-GO" "10" "1.23339040294993e-09" "1" "0.00270306392895743" "regulation of transcription" "TAIR-GO" "10" "0" "1" "0" "response to jasmonic acid stimulus" "TAIR-GO" "10" "1.91740811075608e-06" "1" "0.0174802059194289" "response to red light" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "0.000940369780319115" "1" "0.0577280477110919" "response to wounding" "TAIR-GO" "10" "0.0379665074816762" "1" "0.143780601016352" "shade avoidance" "TAIR-GO" "10" "0" "1" "0" "sulfate assimilation" "TAIR-GO" "10" "1.64963332504721e-05" "1" "0.0228523509207035" "ammonia assimilation cycle" "AraCyc" "10" "4.89554707573117e-05" "1" "0.0246799663877873" "fatty acid oxidation pathway" "AraCyc" "10" "0.0123319523128862" "1" "0.0978505003348293" "glutamine biosynthesis I" "AraCyc" "10" "1.50417192231821e-05" "1" "0.0149339656112382" "histidine biosynthesis" "AraCyc" "10" "0.000263041605080823" "1" "0.0724597382081793" "histidine biosynthesis I" "AraCyc" "10" "9.3724886818311e-05" "1" "0.0645542641938931" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "lipases pathway" "AraCyc" "10" "0.0136458248909032" "2" "0.034948179002362" "nitrate assimilation pathway" "AraCyc" "10" "0.000324079979904756" "1" "0.0302917706999346" "octane oxidation" "AraCyc" "10" "0.000913371972021058" "1" "0.0302917706999346" "phenylalanine biosynthesis II" "AraCyc" "10" "0.000700532411954963" "1" "0.125314019230570" "phenylalanine degradation I" "AraCyc" "10" "0.0129762782214003" "1" "0.174359044121984" "tyrosine degradation" "AraCyc" "10" "1.07128952406066e-06" "1" "0.0302917706999346" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "10" "4.94485950771307e-05" "1" "0.0436445306498107" "nucleotide metabolism" "FunCat" "10" "0" "1" "0" "Alkaloid biosynthesis I" "KEGG" "10" "0.00453050496697031" "1" "0.0771594061995357" "Novobiocin biosynthesis" "KEGG" "10" "3.14514551919983e-05" "1" "0.029411808428263" "Peptidoglycan biosynthesis" "KEGG" "10" "4.82761340997332e-08" "1" "0.00420617868488512" "oxylipin pathway" "LitPath" "10" "5.17646810894522e-11" "1" "0.00100355806951920" "Trp biosyntesis" "LitPath" "10" "0.0124012369190057" "1" "0.10159647483223" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "3.85255612720975e-09" "1" "0.00270306392895743" "photorespiration" "TAIR-GO" "9" "1.17342633337788e-07" "1" "0.00865951073871023" "alanine degradation III" "AraCyc" "9" "3.10017051932681e-10" "1" "0.00229677349130135" "glutamate degradation I" "AraCyc" "9" "8.29144693566879e-06" "1" "0.0195500568186724" "glycine biosynthesis I" "AraCyc" "9" "0.0433527294820384" "1" "0.340977287107521" "photorespiration" "AraCyc" "9" "0.0206361186183175" "1" "0.246812223049213" "superpathway of serine and glycine biosynthesis II" "AraCyc" "9" "0.000588492263761512" "1" "0.125314019230570" "secondary metabolism" "FunCat" "9" "0.0097009486398864" "3" "0.0147864598031963" "beta-Alanine metabolism" "KEGG" "9" "0.00386972295546287" "1" "0.0651870464071368" "Butanoate metabolism" "KEGG" "9" "0.0151080596764961" "1" "0.0962780291780469" "Taurine and hypotaurine metabolism" "KEGG" "9" "3.05384950694171e-08" "1" "0.00420617868488512" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "hemicellulose biosynthesis" "BioPath" "8" "0.0048082683740069" "1" "0.0522942745862892" "Phytic acid biosynthesis" "BioPath" "8" "0.0067421505477108" "1" "0.0994265288639464" "abscisic acid mediated signaling" "TAIR-GO" "8" "1.79474218117761e-06" "1" "0.00529975838047565" "cellular response to phosphate starvation" "TAIR-GO" "8" "0.000176851620356560" "1" "0.0228523509207035" "glycolipid biosynthesis" "TAIR-GO" "8" "3.78405538401740e-06" "1" "0.00529975838047565" "lipid biosynthesis" "TAIR-GO" "8" "4.04886606871325e-05" "1" "0.00865951073871023" "response to cold" "TAIR-GO" "8" "7.61899913580462e-05" "1" "0.0174802059194289" "response to salt stress" "TAIR-GO" "8" "4.23125861229477e-07" "1" "0.00529975838047565" "sulfolipid biosynthesis" "TAIR-GO" "8" "2.06988284118845e-09" "1" "0.000919144852555145" "4-hydroxyproline degradation" "AraCyc" "8" "0.000227258821731273" "1" "0.0363549051605441" "arginine degradation IX" "AraCyc" "8" "0.000227258821731273" "1" "0.042840114174765" "cyanate degradation" "AraCyc" "8" "2.83397123989164e-06" "2" "0.00500402661779557" "glycosylglyceride biosynthesis" "AraCyc" "8" "0.000867493098226371" "1" "0.0149339656112382" "mannitol degradation" "AraCyc" "8" "0.00979237189659254" "2" "0.0315438292409719" "proline degradation I" "AraCyc" "8" "0.0209363965281735" "1" "0.125314019230570" "proline degradation II" "AraCyc" "8" "0.000171550877219546" "1" "0.0363549051605441" "sorbitol degradation" "AraCyc" "8" "0.0125762600582875" "2" "0.034948179002362" "degradation " "FunCat" "8" "0.000141352333254621" "1" "0.0642220299018055" "lipid, fatty acid and isoprenoid degradation" "FunCat" "8" "0.000314963660416538" "1" "0.0686659268977294" "stress response" "FunCat" "8" "0" "1" "0" "transport " "FunCat" "8" "3.74455906772396e-12" "2" "3.89074899113574e-06" "STRESS DATA SET" "quantDE" "2.10396" "maxDE" "9.124518" "STRESS DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "26" "4.53917122070637e-20" "5" "4.46148946991469e-05" "core phenylpropanoid metabolism" "BioPath" "20" "1.86351350924097e-18" "2" "0.000685331392312958" "Phenylpropanoid Metabolism" "BioPath" "20" "3.28457943873866e-08" "2" "0.0300464521918077" "lignin biosynthesis" "TAIR-GO" "20" "8.37859600115128e-25" "2" "2.95358339413724e-05" "phenylpropanoid biosynthesis" "TAIR-GO" "20" "1.27568250586326e-30" "2" "3.58152466228478e-06" "lignin biosynthesis" "AraCyc" "20" "2.38597952594787e-14" "2" "0.003375012514014" "Ascorbate and aldarate metabolism" "KEGG" "20" "4.46343694473486e-20" "2" "0.000618334395969468" "Fluorene degradation" "KEGG" "20" "9.80752150550468e-25" "2" "0.000128118897522181" "gamma-Hexachlorocyclohexane degradation" "KEGG" "20" "2.61023315890854e-23" "2" "0.000189708871407559" "Phenylpropanoid pathway" "LitPath" "20" "0" "2" "0" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "16" "2.63888819757817e-05" "2" "0.0273716360274818" "Miscellaneous acyl lipid metabolism" "AcylLipid" "14" "6.86484670435349e-10" "3" "0.00508775043956458" "biogenesis of cell wall" "FunCat" "12" "1.37054503745159e-09" "2" "0.00159318393752875" "Glutamate/glutamine from nitrogen fixation" "BioPath" "10" "1.54883120303640e-11" "1" "0.00119035222624997" "fatty acid biosynthesis" "TAIR-GO" "10" "1.59155801459918e-08" "1" "0.00540516389326513" "ammonia assimilation cycle" "AraCyc" "10" "5.12272401664857e-11" "1" "0.00165621487525272" "fatty acid oxidation pathway" "AraCyc" "10" "6.73642275673118e-08" "1" "0.0075333190442685" "glutamine biosynthesis I" "AraCyc" "10" "1.28428877982182e-11" "1" "0.000974555480011642" "nitrate assimilation pathway" "AraCyc" "10" "5.08433834603033e-10" "1" "0.00206129988111060" "octane oxidation" "AraCyc" "10" "1.89015829966505e-09" "1" "0.00206129988111060" "phenylpropanoid biosynthesis" "AraCyc" "10" "2.75400428360871e-15" "1" "0.000699143148736029" "suberin biosynthesis" "AraCyc" "10" "4.57164268981012e-08" "1" "0.00676956762599586" "amino acid metabolism" "FunCat" "10" "0.000549987890718359" "1" "0.0575567573672964" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "10" "2.95246599435641e-10" "1" "0.00274193945619196" "biosynthesis of phenylpropanoids" "FunCat" "10" "1.17840324141273e-09" "1" "0.00712378749956875" "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" "10" "1.17840324141273e-09" "1" "0.00712378749956875" "nitrogen and sulfur metabolism" "FunCat" "10" "3.90337995044712e-10" "1" "0.00248612194360537" "Fatty acid metabolism" "KEGG" "10" "2.14119657342522e-06" "1" "0.0226733128419550" "auxin mediated signaling pathway" "TAIR-GO" "9" "7.77092293922245e-15" "1" "0.000162853697136140" "Mo-molybdopterin cofactor biosynthesis" "TAIR-GO" "9" "2.03930854105450e-17" "1" "5.45255421007289e-05" "molybdenum ion binding" "TAIR-GO" "9" "0" "1" "0" "phosphorylation" "TAIR-GO" "9" "0" "1" "0" "protein amino acid phosphorylation" "TAIR-GO" "9" "3.97236122577674e-12" "1" "0.000538059275367787" "asparagine degradation I" "AraCyc" "9" "1.02991864625018e-08" "1" "0.00470652922989541" "gluconeogenesis" "AraCyc" "9" "5.84411094074258e-05" "1" "0.038995744769701" "phenylalanine degradation I" "AraCyc" "9" "7.0326279914298e-07" "1" "0.0149378768939127" "TCA cycle variation IV" "AraCyc" "9" "4.15053268656509e-05" "1" "0.038995744769701" "TCA cycle variation VII" "AraCyc" "9" "0.00172489429332144" "1" "0.0855140221164685" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "9" "6.44918233261631e-12" "1" "0.00120612523884810" "Folate biosynthesis" "KEGG" "9" "3.28924377323987e-10" "1" "0.0052362571284855" "Gluconeogenesis from lipids in seeds" "BioPath" "8" "0.000226200637061583" "1" "0.0306908494794636" "defense response" "TAIR-GO" "8" "1.58174173514160e-05" "1" "0.00956712193174576" "defense response to bacteria" "TAIR-GO" "8" "0" "1" "0" "response to bacteria" "TAIR-GO" "8" "0" "1" "0" "glycerol degradation II" "AraCyc" "8" "0.000120987501232696" "1" "0.038995744769701" "glycerol metabolism" "AraCyc" "8" "2.56372722952371e-10" "1" "0.00470652922989541" "Glycerolipid metabolism" "KEGG" "8" "2.95977506911867e-05" "1" "0.0214303628068525" "HORMONE DATA SET" "quantDE" "1.208526" "maxDE" "2.8992881" "HORMONE DATA SET" "Intermediary Carbon Metabolism" "BioPath" "10" "0" "1" "0" "acetyl-CoA assimilation" "AraCyc" "10" "4.01181037839923e-11" "1" "0.00127450520817286" "glyoxylate cycle" "AraCyc" "10" "4.10158249766995e-12" "1" "0.000655017876909804" "leucine biosynthesis" "AraCyc" "10" "6.86571664021424e-16" "1" "0.000312505472111417" "serine-isocitrate lyase pathway" "AraCyc" "10" "8.20399377671382e-10" "1" "0.00251630706705963" "TCA cycle -- aerobic respiration" "AraCyc" "10" "5.14307103928069e-10" "1" "0.00274299974990493" "TCA cycle variation VII" "AraCyc" "10" "5.35386664904985e-08" "1" "0.00601080261536897" "TCA cycle variation VIII" "AraCyc" "10" "1.28097134250461e-09" "1" "0.00297905765522998" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "10" "3.03656536436325e-26" "1" "1.85406099883713e-06" "glyoxylate cycle" "FunCat" "10" "3.03656536436325e-26" "1" "1.85406099883713e-06" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "10" "1.59280498894464e-09" "1" "0.00305550840669172" "Citrate cycle (TCA cycle)" "KEGG" "10" "1.83892544255075e-14" "1" "0.00032254932315953" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "4.80216498488304e-16" "1" "0.000149020779427334" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "1.26745998999877e-17" "1" "7.50077546025323e-05" "MUTANT DATA SET" "quantDE" "1.915005" "maxDE" "9.0001351" "MUTANT DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "189" "1.53496376806793e-05" "35" "0.020417436341626" "Intermediary Carbon Metabolism" "BioPath" "160" "1.32627924885219e-08" "28" "0.00182938310768094" "Photosystems " "BioPath" "150" "1.36238415909579e-11" "19" "0.00728957615892581" "biogenesis of chloroplast" "FunCat" "116" "2.77647137711701e-24" "15" "0.000162287473312969" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "113" "0.000320562963213126" "15" "0.0128610274024762" "glycolysis and gluconeogenesis" "FunCat" "108" "3.74517424389428e-07" "18" "0.0172763723199995" "Carbon fixation" "KEGG" "101" "4.65210884553095e-22" "17" "7.19135697028522e-06" "transport " "FunCat" "99" "0" "16" "0" "photosynthesis" "FunCat" "94" "6.21059506354003e-26" "14" "8.53418769303331e-06" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "82" "0.00107603227102949" "9" "0.129915220898558" "Chlorophyll a/b binding proteins" "BioPath" "72" "8.30139866465615e-26" "9" "6.52600684580644e-06" "Glycolysis / Gluconeogenesis" "KEGG" "72" "2.82518333330709e-06" "13" "0.00661120571439168" "Glutathione metabolism" "BioPath" "66" "0.0292491608130966" "9" "0.197890102582813" "Biosynthesis of steroids" "KEGG" "65" "1.74841176072785e-06" "7" "0.0456993507651745" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "63" "0.0313291548706567" "8" "0.374269563407716" "Calvin cycle" "AraCyc" "62" "1.12842625679092e-15" "11" "0.000499412759753865" "Gluconeogenesis from lipids in seeds" "BioPath" "61" "0.0365497403025057" "11" "0.0538559254443514" "transport facilitation" "FunCat" "61" "0" "10" "0" "acetate fermentation" "AraCyc" "60" "6.85099163576483e-06" "12" "0.0314696745649873" "Inositol phosphate metabolism" "KEGG" "59" "0.00119489912339839" "11" "0.144762628587507" "additional photosystem II components" "BioPath" "58" "5.37194466160338e-05" "7" "0.0503474467345899" "fructose degradation (anaerobic)" "AraCyc" "56" "1.79485418887327e-05" "10" "0.0794208256361503" "glycolysis IV" "AraCyc" "56" "2.25781709665568e-05" "10" "0.0869179024458579" "sorbitol fermentation" "AraCyc" "56" "0.000123252453124506" "10" "0.103172898933346" "Sulfur metabolism" "KEGG" "54" "8.95090638497146e-15" "7" "0.000362289856130427" "Ascorbate and aldarate metabolism" "KEGG" "51" "1.57353479290520e-13" "6" "0.00468850189389574" "sterol biosynthesis" "BioPath" "50" "2.5855333418776e-06" "5" "0.0520720187818101" "sterol biosynthesis" "TAIR-GO" "50" "7.72979661558459e-13" "5" "0.0112919727638871" "Pentose phosphate pathway" "KEGG" "50" "9.56385534376849e-10" "11" "0.000139624459373060" "Citrate cycle (TCA cycle)" "KEGG" "48" "3.27829899483864e-07" "8" "0.00812282331164921" "Selenoamino acid metabolism" "KEGG" "48" "1.99884597766073e-08" "6" "0.0135239660592208" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "47" "7.90875041223788e-07" "6" "0.0433750737929713" "cysteine biosynthesis I" "AraCyc" "46" "7.35505070927122e-07" "8" "0.0226365518518072" "Cysteine metabolism" "KEGG" "46" "2.84499296771173e-10" "7" "0.00169660837566432" "photorespiration" "AraCyc" "45" "5.35340374938748e-12" "8" "0.00918545868982742" "gluconeogenesis" "AraCyc" "44" "0.000777295891522247" "6" "0.219895618189932" "glycerol degradation II" "AraCyc" "44" "4.22527715010235e-05" "8" "0.0525935367589975" "sulfate assimilation III" "AraCyc" "44" "0.00124415482336469" "6" "0.0631803660894152" "Glutamate metabolism" "KEGG" "44" "0.00276813643653826" "5" "0.174840490928960" "Shikimate pathway" "LitPath" "44" "0.0403446173191915" "5" "0.316843385875243" "development" "TAIR-GO" "43" "0.00156669141949348" "5" "0.14781191670748" "chlorophyll binding" "TAIR-GO" "42" "1.12312234628343e-15" "5" "0.000914828182877107" "TCA cycle -- aerobic respiration" "AraCyc" "42" "0.00176662439412342" "8" "0.0665823999478048" "aerobic respiration" "FunCat" "42" "3.03172420202345e-14" "6" "0.000258997412959103" "respiration" "FunCat" "42" "3.03172420202345e-14" "6" "0.000258997412959103" "Carotenoid and abscisic acid metabolism" "LitPath" "42" "4.56098244979229e-07" "5" "0.0265252624178289" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "40" "0.000658354487600023" "4" "0.212298998491399" "TCA cycle variation VIII" "AraCyc" "40" "0.0220328990076386" "7" "0.163920124984233" "brassinosteroid biosynthesis" "LitPath" "40" "6.76640563223915e-05" "4" "0.0853904922512477" "sterol and brassinosteroid biosynthesis" "LitPath" "40" "2.04204088515874e-08" "4" "0.0220591864389487" "serine-isocitrate lyase pathway" "AraCyc" "38" "0.0279625126331266" "6" "0.219895618189932" "calmodulin binding" "TAIR-GO" "37" "1.16468019011789e-17" "5" "0.000914828182877107" "lactose degradation IV" "AraCyc" "37" "0" "9" "0" "Carotenoid biosynthesis" "BioPath" "36" "8.90540416229409e-11" "4" "0.00364455246257105" "carotenoid biosynthesis" "AraCyc" "36" "1.36535674684591e-11" "4" "0.00247240013416068" "leucine biosynthesis" "AraCyc" "36" "2.26796274062989e-17" "7" "0.000115984053874283" "carotenid biosynthesis" "LitPath" "36" "8.85502701018266e-11" "4" "0.00495327709341022" "Porphyrin and chlorophyll metabolism" "KEGG" "34" "0.00152007090131237" "4" "0.0839499612064002" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "34" "4.34214156164139e-09" "6" "0.00111342031576375" "growth" "TAIR-GO" "33" "0.000669912764312848" "4" "0.086323717992914" "ascorbic acid biosynthesis" "BioPath" "32" "5.55540855406251e-05" "4" "0.0658084658798813" "acetyl-CoA assimilation" "AraCyc" "32" "0.00850438113511333" "6" "0.054724787749435" "glycine biosynthesis I" "AraCyc" "32" "0.000336895038008510" "6" "0.187522376699181" "nucleotide metabolism" "FunCat" "32" "0" "6" "0" "ascorbate glutathione cycle" "AraCyc" "31" "5.27978741336292e-08" "5" "0.00521174919758141" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "31" "0.00473194837801792" "4" "0.0713749613385288" "light harvesting complex" "BioPath" "30" "8.96980656840814e-17" "4" "7.46816136989042e-05" "chlorophyll biosynthesis" "TAIR-GO" "30" "4.4455050857722e-05" "3" "0.0447397095683436" "sterol biosynthesis" "AraCyc" "30" "0.00398620760397378" "3" "0.170264099014093" "transported compounds (substrates)" "FunCat" "30" "0" "5" "0" "Methionine metabolism" "KEGG" "30" "7.52402282474797e-06" "3" "0.0937679126484196" "Fluorene degradation" "KEGG" "29" "1.02474061859927e-07" "3" "0.0373635208202951" "gamma-Hexachlorocyclohexane degradation" "KEGG" "29" "3.09819999016567e-06" "3" "0.0566654939073628" "glyceraldehyde 3-phosphate degradation" "AraCyc" "28" "2.84444944960379e-05" "4" "0.100097585381842" "galactose degradation I" "AraCyc" "27" "3.27142070082128e-26" "7" "0" "trehalose biosynthesis III" "AraCyc" "27" "0.00799830478207304" "4" "0.27180379281578" "Cytochrome b6/f complex" "BioPath" "26" "7.48352613778098e-11" "3" "0.0104868767528550" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "26" "2.19186854213958e-17" "3" "0.000129047359925827" "Protein folding / chaperonins (chloroplast)" "BioPath" "26" "2.02430124864673e-06" "3" "0.0542140476958243" "fatty acid biosynthesis" "TAIR-GO" "26" "0.000339329094581839" "3" "0.0563445254023045" "glyoxylate cycle" "AraCyc" "26" "0.0145381234622277" "4" "0.100097585381842" "Glyoxylate and dicarboxylate metabolism" "KEGG" "26" "0.00862861709481897" "4" "0.095172904616097" "photorespiration" "TAIR-GO" "25" "6.39469578219698e-19" "4" "9.97324356425274e-06" "energy" "FunCat" "25" "0" "4" "0" "Protein folding and associated processing" "KEGG" "25" "0.000421633534173298" "3" "0.192656026795007" "embryonic development" "TAIR-GO" "24" "0.0100305875856233" "3" "0.116796751354116" "photosynthesis" "TAIR-GO" "24" "0.00764784007961842" "3" "0.13507004534985" "tryptophan biosynthesis" "TAIR-GO" "24" "0.00426166223932306" "3" "0.0838796648492045" "unidimensional cell growth" "TAIR-GO" "24" "0.000150135787501911" "3" "0.0346137166231142" "cysteine biosynthesis II" "AraCyc" "24" "6.85271756259762e-06" "5" "0.0338394210578782" "formylTHF biosynthesis" "AraCyc" "24" "2.76382625295189e-05" "4" "0.0400669809032446" "serine biosynthesis" "AraCyc" "24" "2.70553154604131e-15" "5" "1.08738906011934e-05" "tryptophan biosynthesis" "AraCyc" "24" "0.0366456362029389" "3" "0.318747625080719" "Trp biosyntesis" "LitPath" "24" "0.0158071412849587" "3" "0.124498826367542" "superpathway of serine and glycine biosynthesis II" "AraCyc" "23" "1.39509953003605e-05" "5" "0.0274767607377985" "protein folding" "TAIR-GO" "22" "0" "3" "0" "homocysteine and cysteine interconversion" "AraCyc" "22" "1.94407752298353e-07" "3" "0.0176255049304178" "methionine biosynthesis II" "AraCyc" "22" "6.89834379500992e-05" "3" "0.0460056593418350" "degradation " "FunCat" "21" "0.0116601247196402" "3" "0.246140816834486" "brassinosteroid biosynthesis" "TAIR-GO" "20" "0.00491366266257597" "2" "0.112505970047956" "lipid biosynthesis" "TAIR-GO" "20" "1.6741459933871e-08" "2" "0.00867176691510051" "methionine biosynthesis" "TAIR-GO" "20" "6.3091046204888e-12" "2" "0.00374689857131648" "steroid biosynthesis" "TAIR-GO" "20" "0.00491366266257597" "2" "0.112505970047956" "octane oxidation" "AraCyc" "20" "0.0069372470172377" "2" "0.0880884352280851" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "20" "0.00741708603315222" "2" "0.175568479451652" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "20" "0" "3" "0" "glyoxylate cycle" "FunCat" "20" "0" "3" "0" "metabolism of acyl-lipids in mitochondria" "AcylLipid" "20" "0.0354827158090528" "2" "0.230003761054275" "chlorophyll biosynthesis" "LitPath" "20" "0.00424749693935107" "2" "0.0759244278841005" "mevalonate pathway, cytosol" "LitPath" "20" "0.0036824646689276" "2" "0.125859767349877" "Tyr biosynthesis" "LitPath" "20" "0" "2" "0" "hypersensitive response" "TAIR-GO" "19" "2.1119675930044e-07" "2" "0.0160624231034655" "Chloroplastic protein turnover" "BioPath" "18" "0.000117099327529155" "3" "0.0318002693513257" "Thylakoid biogenesis and photosystem assembly" "BioPath" "18" "0.000696951533361694" "2" "0.03064968721388" "ATP-dependent proteolysis" "TAIR-GO" "18" "5.29354145563581e-07" "3" "0.0187603247325532" "carotene biosynthesis" "TAIR-GO" "18" "1.28956337475329e-12" "2" "0.00101225654028674" "carotenoid biosynthesis" "TAIR-GO" "18" "8.48764749076206e-05" "2" "0.0386245632939098" "photosynthesis light harvesting" "TAIR-GO" "18" "6.98932307897533e-06" "2" "0.0386245632939098" "oxidative branch of the pentose phosphate pathway" "AraCyc" "18" "1.29233161333121e-05" "5" "0.00148956854202736" "C-compound and carbohydrate utilization " "FunCat" "18" "0" "4" "0" "ATP synthase components" "BioPath" "16" "0.00643230088605074" "2" "0.0825535380133526" "L-serine biosynthesis" "TAIR-GO" "16" "0" "2" "0" "photosystem I" "TAIR-GO" "16" "6.43836710336949e-06" "2" "0.0260437743072718" "protein biosynthesis" "TAIR-GO" "16" "0" "3" "0" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "glucose and glucose-1-phosphate degradation" "AraCyc" "16" "0.000366941756430572" "2" "0.164598345646772" "glycine degradation I" "AraCyc" "16" "2.90341939247019e-07" "3" "0.0115642630119149" "starch biosynthesis" "AraCyc" "16" "0" "2" "0" "threonine degradation" "AraCyc" "16" "0.00370089469816628" "5" "0.0219584387501883" "stress response" "FunCat" "16" "0" "2" "0" "transport routes " "FunCat" "16" "0.018686198876497" "3" "0.0917730541661342" "alanine degradation III" "AraCyc" "15" "1.90090063880974e-12" "2" "0.00132083478288365" "polyamine biosynthesis III" "AraCyc" "15" "0.010201984740536" "2" "0.111619568836467" "photosystem I subunit precursor" "BioPath" "14" "7.87282802617571e-08" "2" "0.0103115168703309" "Translation (chloroplast)" "BioPath" "14" "0.000242377539510698" "2" "0.03064968721388" "pentose-phosphate shunt" "TAIR-GO" "14" "0.0205812294733276" "3" "0.0259639504398316" "response to pathogenic bacteria" "TAIR-GO" "14" "1.00712362555829e-05" "2" "0.00867176691510051" "isoleucine biosynthesis I" "AraCyc" "14" "0.0132936650825518" "3" "0.0901201016664228" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "14" "0.00177997828452689" "3" "0.0460056593418350" "valine biosynthesis" "AraCyc" "14" "0.0132936650825518" "3" "0.0901201016664228" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "4.20405167677106e-12" "2" "0.0009294840533742" "electron transport and membrane-associated energy conservation " "FunCat" "14" "0.000115493657072108" "2" "0.0499210779575695" "N-Glycan biosynthesis" "KEGG" "14" "0.0200840938012313" "4" "0.0170815738134794" "glutamate degradation I" "AraCyc" "13" "0.00150169951798378" "2" "0.0484877917631616" "valine degradation II" "AraCyc" "13" "0.0289727378182799" "3" "0.108092350839375" "transmembrane signal transduction" "FunCat" "13" "4.21825139193548e-10" "3" "0.000415971548454289" "Glycosphingolipid metabolism" "KEGG" "13" "5.05733535583956e-06" "2" "0.0273696307613026" "Plastoquinone biosynthesis" "BioPath" "12" "0" "2" "0" "glycine decarboxylation via glycine cleavage system" "TAIR-GO" "12" "0" "2" "0" "brassinosteroid biosynthesis II" "AraCyc" "12" "0.0171530616844248" "2" "0.137230802653325" "methylglyoxal degradation" "AraCyc" "12" "0.0108377816345334" "3" "0.0589972199521244" "lipid transport " "FunCat" "12" "1.01232801137484e-05" "2" "0.0358195809115361" "response to oxidative stress" "TAIR-GO" "11" "1.01071990789775e-05" "2" "0.00867176691510051" "channel / pore class transport" "FunCat" "11" "0.0331059584236074" "2" "0.175568479451652" "detoxification" "FunCat" "11" "0" "2" "0" "electron / hydrogen transport " "FunCat" "11" "0.000325762200541894" "2" "0.0148375267068981" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "11" "0" "2" "0" "brassinosteroid biosynthesis" "BioPath" "10" "0.000806827352496999" "1" "0.0318628748301634" "ERD1 protease (ClpC-like)" "BioPath" "10" "0" "1" "0" "Other cell wall metabolism related enzymes" "BioPath" "10" "8.48401716256511e-06" "1" "0.0114319818981767" "Oxygen-evolving enhancer protein" "BioPath" "10" "0.00259518172824318" "1" "0.0918702387720643" "Tocopherol biosynthesis" "BioPath" "10" "0.0496789849065525" "1" "0.0918702387720643" "Transcriptional regulators (chloroplast)" "BioPath" "10" "8.48401716256511e-06" "1" "0.0114319818981767" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "0.00447552569846434" "1" "0.082502913939686" "biotin binding" "TAIR-GO" "10" "1.69695681653482e-06" "1" "0.0101277299770525" "carotenoid biosynthesis/TAS" "TAIR-GO" "10" "0" "1" "0" "cell communication" "TAIR-GO" "10" "0" "1" "0" "cell death" "TAIR-GO" "10" "0.00296402605787158" "1" "0.0529704551298518" "cellular response to sulfate starvation" "TAIR-GO" "10" "8.47538932888441e-07" "1" "0.0101277299770525" "chlorophyll catabolism" "TAIR-GO" "10" "0.000195586786037557" "1" "0.0283586768505841" "chloroplast ATP synthase complex" "TAIR-GO" "10" "1.69695681653482e-06" "1" "0.0101277299770525" "chloroplast envelope" "TAIR-GO" "10" "0" "1" "0" "chloroplast organization and biogenesis" "TAIR-GO" "10" "9.45395348831448e-05" "1" "0.115723159357796" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "10" "0.00296402605787158" "1" "0.082502913939686" "ethylene biosynthesis" "TAIR-GO" "10" "0.0336609160136391" "1" "0.189251696739371" "etioplast organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "galactolipid biosynthesis" "TAIR-GO" "10" "0.0173616929129363" "1" "0.082502913939686" "gibberellic acid mediated signaling" "TAIR-GO" "10" "0.0173616929129363" "1" "0.082502913939686" "glutathione biosynthesis" "TAIR-GO" "10" "1.69695681653482e-06" "1" "0.0101277299770525" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "glycine catabolism" "TAIR-GO" "10" "0" "1" "0" "glycolipid biosynthesis" "TAIR-GO" "10" "0.00189284117161783" "1" "0.0529704551298518" "isoprenoid biosynthesis" "TAIR-GO" "10" "0.0173616929129363" "1" "0.082502913939686" "magnesium chelatase complex" "TAIR-GO" "10" "6.7000575192293e-08" "1" "0.0101277299770525" "methionine biosynthesis from L-homoserine via cystathione" "TAIR-GO" "10" "0" "1" "0" "plastid organization and biogenesis" "TAIR-GO" "10" "4.18410965549419e-05" "1" "0.0529704551298518" "plastoquinone biosynthesis" "TAIR-GO" "10" "1.69695681653482e-06" "1" "0.0101277299770525" "positive regulation of transcription" "TAIR-GO" "10" "0.000137351412381128" "1" "0.0283586768505841" "protein binding" "TAIR-GO" "10" "0.000508608817415504" "1" "0.082502913939686" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "proton transport" "TAIR-GO" "10" "0.00447552569846434" "1" "0.082502913939686" "regulation of transcription" "TAIR-GO" "10" "0" "1" "0" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to salicylic acid stimulus" "TAIR-GO" "10" "0" "1" "0" "response to toxin" "TAIR-GO" "10" "0" "1" "0" "vitamin E biosynthesis" "TAIR-GO" "10" "0.00296402605787158" "1" "0.0529704551298518" "xenobiotic catabolism" "TAIR-GO" "10" "0" "1" "0" "ascorbate biosynthesis" "AraCyc" "10" "0.0159147965992596" "1" "0.259666476714922" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "0.00761265695209264" "1" "0.0622432272932563" "glutathione biosynthesis" "AraCyc" "10" "5.78344041097224e-06" "1" "0.0120628183489443" "methionine and S-adenosylmethionine synthesis" "AraCyc" "10" "0.00499690443401661" "1" "0.134234635308327" "peptidoglycan biosynthesis" "AraCyc" "10" "0.00245661978237832" "1" "0.216840494364670" "phospholipid desaturation pathway" "AraCyc" "10" "0.0389981662395182" "1" "0.0963135076699259" "plastoquinone biosynthesis" "AraCyc" "10" "0.000287150069448911" "1" "0.0622432272932563" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "0.0256133103907507" "1" "0.174752318714293" "degradation of lipids, fatty acids and isoprenoids" "FunCat" "10" "0" "1" "0" "detoxification by modification" "FunCat" "10" "6.35294735659614e-07" "1" "0.0267985897368878" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "10" "0.028930917858059" "1" "0.185576338181148" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "10" "0.00475409858652372" "1" "0.0920090751460934" "Androgen and estrogen metabolism" "KEGG" "10" "0.00680719593814171" "1" "0.121498260504076" "Tetracycline biosynthesis" "KEGG" "10" "0.00081493241772526" "1" "0.0414288787859046" "chlorophyll catabolism" "LitPath" "10" "0.000884200068559579" "1" "0.0371105875020183" "diterpene biosynthesis" "LitPath" "10" "9.35627377024205e-06" "1" "0.0133851186674834" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "DNA methylation" "TAIR-GO" "9" "0" "1" "0" "flower development" "TAIR-GO" "9" "0.0132520926687605" "1" "0.082502913939686" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "0.000165193023554490" "1" "0.0283586768505841" "nuclear heterochromatin" "TAIR-GO" "9" "0" "1" "0" "nuclear ubiquitin ligase complex" "TAIR-GO" "9" "0" "1" "0" "phosphorylation" "TAIR-GO" "9" "0" "1" "0" "pollen germination" "TAIR-GO" "9" "0.000347364346670114" "1" "0.0283586768505841" "pollen tube growth" "TAIR-GO" "9" "7.09966703462815e-05" "1" "0.0529704551298518" "putrescine biosynthesis" "TAIR-GO" "9" "1.02316218863377e-06" "1" "0.0101277299770525" "RNA interference, production of siRNA" "TAIR-GO" "9" "0" "1" "0" "seed germination" "TAIR-GO" "9" "2.38216402197218e-10" "1" "0" "sphingosine biosynthesis" "TAIR-GO" "9" "0" "1" "0" "trehalose biosynthesis" "TAIR-GO" "9" "4.54608704917650e-06" "1" "0.0101277299770525" "oxidation of fatty acids " "FunCat" "9" "3.73098338800965e-09" "1" "0.00955251928121208" "Taurine and hypotaurine metabolism" "KEGG" "9" "0.00115190379385138" "1" "0.0650639732451816" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "ClpP protease complex " "BioPath" "8" "0.0348675848818795" "2" "0.0625955764824234" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "8" "0.00218120021025110" "2" "0.0260437743072718" "nitrate assimilation" "TAIR-GO" "8" "0.000873097153954445" "1" "0.0283586768505841" "nonphotochemical quenching" "TAIR-GO" "8" "4.22993954525732e-05" "1" "0.0101277299770525" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "photosystem II" "TAIR-GO" "8" "0.0133607006630452" "1" "0.082502913939686" "photosystem II antenna complex" "TAIR-GO" "8" "0.000119186234556792" "1" "0.0283586768505841" "response to reactive oxygen species" "TAIR-GO" "8" "0" "1" "0" "transcription factor binding" "TAIR-GO" "8" "0" "1" "0" "ribose degradation" "AraCyc" "8" "0.0385837259029106" "2" "0.137230802653325" "superpathway of gluconate degradation" "AraCyc" "8" "0.0385837259029106" "4" "0.0245368680067095" "accessory proteins of photosynthetic electron transport " "FunCat" "8" "5.28054673215691e-07" "1" "0.00955251928121208" "Replication complex" "KEGG" "8" "0.0275083341151014" "2" "0.0661506055504156" "auxin biosynthesis" "TAIR-GO" "7" "0.0130084562624328" "1" "0.0529704551298518" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "response to water deprivation" "TAIR-GO" "7" "0" "2" "0" "phosphoglycerate dehydrogenase, cysteine biosynthesis II" "AraCyc" "7" "6.28224154989359e-06" "1" "0.0120628183489443" "phosphoglycerate dehydrogenase, serine biosynthesis" "AraCyc" "7" "6.28224154989359e-06" "1" "0.0120628183489443" "cation transport (Na, K, Ca , NH4, etc.) " "FunCat" "7" "0.0029232618813682" "1" "0.0267985897368878" "heavy metal ion transport (Cu, Fe, etc.)" "FunCat" "7" "0.000272027283261195" "1" "0.00955251928121208" "ion transport " "FunCat" "7" "0" "1" "0"