"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"ORGAN DATA SET"	"quantDE"	"0.8910147"	"maxDE"	"3.8335396"	"ORGAN DATA SET"
"mono-/sesqui-/di-terpene biosynthesis"	"LitPath"	"8"	"1.32384346189354e-07"	"2"	"0.00413991752859283"
"terpenoid metabolism"	"LitPath"	"8"	"1.39007549711235e-07"	"2"	"0.00454226636014474"
"calcium-mediated signaling"	"TAIR-GO"	"7"	"1.08857820219542e-23"	"1"	"1.55787263144940e-06"
"cell growth / morphogenesis "	"FunCat"	"7"	"3.8136827300977e-14"	"1"	"0.000112674176496845"
"cytoskeleton"	"FunCat"	"7"	"0"	"1"	"0"
"directional cell growth (morphogenesis)"	"FunCat"	"7"	"2.11793357588139e-18"	"1"	"3.39328894155481e-05"
"intracellular signalling"	"FunCat"	"7"	"4.7932333725988e-07"	"1"	"0.0151941573085280"
"Phosphatidylinositol signaling system"	"KEGG"	"7"	"1.21320356312723e-13"	"1"	"7.40518003563461e-05"
"Signal Transduction"	"KEGG"	"7"	"1.66760987461574e-13"	"1"	"7.85397882567309e-05"
"STRESS DATA SET"	"quantDE"	"2.510151"	"maxDE"	"5.563249"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"1.229522"	"maxDE"	"4.1053027"	"HORMONE DATA SET"
"Leaf Glycerolipid Biosynthesis"	"BioPath"	"28"	"1.13952492568359e-09"	"4"	"0.00986345724627363"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"28"	"6.41786154512861e-22"	"4"	"6.00971183208408e-05"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"20"	"1.55306696427469e-15"	"2"	"0.00322944587166737"
"Phenylpropanoid Metabolism"	"BioPath"	"13"	"0.00874156240504212"	"3"	"0.0429096866980029"
"gibberellin biosynthesis"	"AraCyc"	"13"	"5.51112406331887e-17"	"2"	"7.25490149569493e-05"
"Benzoate degradation via CoA ligation"	"KEGG"	"11"	"2.12923736230454e-06"	"2"	"0.0446632115907541"
"Inositol phosphate metabolism"	"KEGG"	"11"	"5.807760903924e-06"	"2"	"0.0552466643969242"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"11"	"4.85579031742042e-07"	"2"	"0.0363395229684181"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"1.85201550491520e-09"	"1"	"0.00442087449963415"
"cellular response to phosphate starvation"	"TAIR-GO"	"10"	"9.62002787412813e-13"	"1"	"0.00191776065234240"
"galactolipid biosynthesis"	"TAIR-GO"	"10"	"1.11849891160380e-13"	"1"	"0.000695489154120349"
"lipid biosynthesis"	"TAIR-GO"	"10"	"1.11849891160380e-13"	"1"	"0.000695489154120349"
"lipid metabolism"	"TAIR-GO"	"10"	"1.86111806131428e-16"	"1"	"0.000210790256266322"
"phospholipid metabolism"	"TAIR-GO"	"10"	"6.10369836751506e-19"	"1"	"7.06235592923726e-05"
"glycosylglyceride biosynthesis"	"AraCyc"	"10"	"1.71989349327482e-13"	"1"	"0.00104586863514648"
"phospholipid biosynthesis II"	"AraCyc"	"10"	"1.11068348334057e-10"	"1"	"0.0107537179171896"
"triacylglycerol biosynthesis"	"AraCyc"	"10"	"7.31707397889606e-15"	"1"	"0.00075042842101644"
"C-compound and carbohydrate utilization "	"FunCat"	"10"	"3.52181657303752e-26"	"1"	"1.13327989746908e-05"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"10"	"2.37865596028075e-10"	"1"	"0.00861959824961624"
"calcium ion transport"	"TAIR-GO"	"9"	"2.25855492009445e-17"	"1"	"7.06235592923726e-05"
"cytokinin catabolism"	"TAIR-GO"	"9"	"6.34951651874418e-15"	"1"	"0.000695489154120349"
"gibberellic acid biosynthesis"	"TAIR-GO"	"9"	"5.25815143602069e-09"	"1"	"0.00370979929804542"
"metal ion transport"	"TAIR-GO"	"9"	"0"	"1"	"0"
"N-terminal protein myristoylation"	"TAIR-GO"	"9"	"1.04733521184461e-09"	"1"	"0.00370979929804542"
"cytokinins degradation"	"AraCyc"	"9"	"1.70830240022114e-17"	"1"	"0.000152133297391159"
"intracellular signalling"	"FunCat"	"9"	"6.45934842533049e-10"	"1"	"0.0151941573085280"
"Membrane Transport"	"KEGG"	"9"	"1.96070993844742e-10"	"1"	"0.0162068593495094"
"Other ion-coupled transporters"	"KEGG"	"9"	"2.65360006603296e-12"	"1"	"0.00489854026416287"
"Ion channels"	"KEGG"	"8"	"2.47903236975482e-07"	"4"	"6.26963650534658e-05"
"Ligand-Receptor Interaction"	"KEGG"	"8"	"3.15151482717708e-07"	"4"	"7.6243402319306e-05"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"8"	"0.00930138148893104"	"2"	"0.0266044020065204"
"MUTANT DATA SET"	"quantDE"	"0.733902"	"maxDE"	"6.509325136"	"MUTANT DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"88"	"1.10606347764821e-25"	"13"	"5.42305179965029e-05"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"62"	"1.32121021230162e-36"	"9"	"5.4956777831117e-07"
"Shikimate pathway"	"LitPath"	"62"	"6.7914826641839e-25"	"9"	"1.76063895935401e-05"
"tryptophan biosynthesis"	"TAIR-GO"	"58"	"2.51039017665559e-63"	"8"	"4.46501705590542e-11"
"Trp biosyntesis"	"LitPath"	"58"	"6.81658913697533e-43"	"8"	"2.77347102225973e-08"
"tryptophan biosynthesis"	"AraCyc"	"48"	"1.58766572077556e-46"	"7"	"1.40561428442328e-08"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"46"	"0.000147997838784160"	"7"	"0.0510376458171626"
"Phenylpropanoid pathway"	"LitPath"	"46"	"2.73810787423569e-07"	"8"	"0.0200514075291864"
"response to pathogenic bacteria"	"TAIR-GO"	"38"	"7.9763159039197e-65"	"6"	"0"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"32"	"6.95251034644618e-18"	"4"	"0.000721277149526006"
"lignin biosynthesis"	"AraCyc"	"30"	"2.11351057393112e-15"	"5"	"0.000154843127088775"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"28"	"4.45203404763305e-11"	"4"	"0.00552778561900829"
"core phenylpropanoid metabolism"	"BioPath"	"26"	"1.06578995091975e-08"	"4"	"0.00463552819371151"
"biosynthesis of proto- and siroheme"	"AraCyc"	"24"	"1.87148363111468e-12"	"3"	"0.00720235220972267"
"biogenesis of chloroplast"	"FunCat"	"24"	"6.36361045819434e-08"	"3"	"0.0407380147363442"
"secondary metabolism"	"FunCat"	"22"	"3.27134978649815e-10"	"4"	"0.00865868543402108"
"Propanoate metabolism"	"KEGG"	"22"	"8.55324382024784e-12"	"3"	"0.00798136092810173"
"Benzoate degradation via CoA ligation"	"KEGG"	"21"	"6.90947864328093e-05"	"7"	"0.0024774861261201"
"Inositol phosphate metabolism"	"KEGG"	"21"	"0.000279313345450841"	"7"	"0.00424391445689726"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"21"	"8.02025786854426e-06"	"7"	"0.00146103753899558"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"20"	"1.10036291590108e-05"	"2"	"0.0472198381104046"
"amino acid metabolism"	"FunCat"	"20"	"0.0133557069595582"	"3"	"0.179106740773668"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"20"	"2.63938215336558e-08"	"2"	"0.034873738184714"
"Lipid signaling"	"AcylLipid"	"20"	"0.00490867914829592"	"7"	"0.0732877915026722"
"gibberellic acid catabolism"	"TAIR-GO"	"19"	"2.2316481535152e-21"	"2"	"0.000150159710391499"
"C-compound and carbohydrate utilization "	"FunCat"	"19"	"0"	"5"	"0"
"Nucleotide sugars metabolism"	"KEGG"	"18"	"5.06226304797348e-13"	"5"	"6.8076953453404e-06"
"defense response"	"TAIR-GO"	"17"	"1.62873057716101e-08"	"3"	"0.00133680305081811"
"ethylene biosynthesis"	"TAIR-GO"	"16"	"1.39851825118157e-15"	"2"	"0.000796443784952423"
"response to wounding"	"TAIR-GO"	"16"	"3.49456073677463e-07"	"3"	"0.00194369904761420"
"metabolism of the cysteine - aromatic group"	"FunCat"	"16"	"8.72790002422794e-14"	"2"	"0.00102379376338801"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"15"	"0.0124858781902237"	"4"	"0.127422135793890"
"toxin catabolism"	"TAIR-GO"	"14"	"2.82832012873520e-07"	"7"	"1.04909712068780e-05"
"chlorophyll biosynthesis"	"AraCyc"	"14"	"0.000571255733777697"	"2"	"0.0754203517264721"
"Phenylalanine metabolism"	"KEGG"	"14"	"0.00634080189916024"	"4"	"0.0842603212963945"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"13"	"0.0191723375233221"	"5"	"0.00651847499056552"
"cellulose biosynthesis"	"BioPath"	"12"	"0.0157232688651763"	"2"	"0.0997428465301281"
"colanic acid building blocks biosynthesis"	"AraCyc"	"12"	"0.00166621336962093"	"2"	"0.0897200169329611"
"flavonoid biosynthesis"	"AraCyc"	"12"	"2.17306301606729e-06"	"2"	"0.0139606803669183"
"Alanine and aspartate metabolism"	"KEGG"	"12"	"0.000491755703545201"	"2"	"0.0496231927125554"
"beta-Alanine metabolism"	"KEGG"	"12"	"6.81767388105288e-06"	"2"	"0.0155665331966341"
"Butanoate metabolism"	"KEGG"	"12"	"5.88173508811363e-05"	"2"	"0.0285021412167452"
"Fructose and mannose metabolism"	"KEGG"	"12"	"0.0130411980863293"	"2"	"0.126064823880468"
"Glutamate metabolism"	"KEGG"	"12"	"0.0244157772874631"	"2"	"0.108437720876012"
"Taurine and hypotaurine metabolism"	"KEGG"	"12"	"2.60592654996228e-13"	"2"	"0.000183357874786447"
"lignin biosynthesis"	"TAIR-GO"	"10"	"2.78994573994264e-06"	"1"	"0.0204216391565801"
"methionine biosynthesis"	"TAIR-GO"	"10"	"1.82524997967283e-10"	"1"	"0.00369334183374102"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"5.41443327349327e-08"	"1"	"0.00893573131859473"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"4.38787768607956e-06"	"1"	"0.0414692062652614"
"sulfate assimilation"	"TAIR-GO"	"10"	"2.48640817107266e-07"	"1"	"0.0161442235815537"
"alanine biosynthesis II"	"AraCyc"	"10"	"2.87258467642379e-05"	"2"	"0.0112797863605714"
"dissimilatory sulfate reduction"	"AraCyc"	"10"	"6.60676868610922e-08"	"1"	"0.0070578156033659"
"fructose degradation (anaerobic)"	"AraCyc"	"10"	"0.0265761866737086"	"2"	"0.117212162577993"
"methionine biosynthesis II"	"AraCyc"	"10"	"9.67397547101205e-07"	"1"	"0.0243487085591221"
"phenylalanine biosynthesis II"	"AraCyc"	"10"	"4.88796054961841e-06"	"2"	"0.00786717363454626"
"sorbitol fermentation"	"AraCyc"	"10"	"0.0398935120329685"	"2"	"0.129860209840323"
"sulfate assimilation III"	"AraCyc"	"10"	"0.0106523692744656"	"1"	"0.129469637965612"
"aerobic respiration"	"FunCat"	"10"	"5.41866830069455e-06"	"1"	"0.0399370619269295"
"energy"	"FunCat"	"10"	"2.21171529384087e-15"	"2"	"9.50950665409986e-06"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"2"	"0"
"nitrogen and sulfur utilization "	"FunCat"	"10"	"3.37624108622616e-07"	"1"	"0.0221050967825398"
"respiration"	"FunCat"	"10"	"5.41866830069455e-06"	"1"	"0.0399370619269295"
"Cysteine metabolism"	"KEGG"	"10"	"0.00353544567428762"	"2"	"0.034873738184714"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"0.000185808975296082"	"1"	"0.0398761315224256"
"Methionine metabolism"	"KEGG"	"10"	"0.000375808819336625"	"1"	"0.0999642219186636"
"Selenoamino acid metabolism"	"KEGG"	"10"	"0.0132297708742772"	"1"	"0.193215041505891"
"Sulfur metabolism"	"KEGG"	"10"	"0.00369662479693120"	"1"	"0.117450472904783"
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	"10"	"0.0304977904414009"	"3"	"0.103191636754770"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"10"	"0.0123882150144108"	"1"	"0.174294059933953"
"giberelin catabolism"	"LitPath"	"10"	"1.37472206775298e-09"	"1"	"0.00289337521341901"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"0.000679985707722356"	"1"	"0.0510496949609176"
"arabinose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"0.000168071920134108"	"1"	"0.075061602163587"
"N-terminal protein myristoylation"	"TAIR-GO"	"9"	"1.68828309107129e-05"	"1"	"0.0302027662388403"
"IAA conjugate biosynthesis II"	"AraCyc"	"9"	"0"	"1"	"0"
"Galactose metabolism"	"KEGG"	"9"	"0.0168405087443673"	"1"	"0.203117927629569"
"hemicellulose biosynthesis"	"BioPath"	"8"	"0.00286046493790903"	"1"	"0.058496450252381"
"triacylglycerol degradation"	"AraCyc"	"8"	"0.00132440970022467"	"4"	"0.00307882763860781"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"8"	"0.006914963619881"	"3"	"0.0969632465760099"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"response to auxin stimulus"	"TAIR-GO"	"7"	"5.40429115098611e-05"	"1"	"0.0204216391565801"
"salicylic acid biosynthesis"	"TAIR-GO"	"7"	"1.03620474438770e-09"	"1"	"0.000636131324508504"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"riboflavin and FMN and FAD biosynthesis"	"AraCyc"	"7"	"1.42464754901009e-08"	"1"	"0.0070578156033659"
"Fluorene degradation"	"KEGG"	"7"	"0.00388996885406162"	"1"	"0.0602146042337256"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"7"	"0.00923091401847742"	"1"	"0.0753410322756073"
"Riboflavin metabolism"	"KEGG"	"7"	"1.09236195485013e-06"	"1"	"0.0281559123132184"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"