"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "706" "92" "" "" "biogenesis of chloroplast" "FunCat" "483" "71" "" "" "additional photosystem II components" "BioPath" "370" "51" "" "" "chlorophyll biosynthesis" "AraCyc" "348" "42" "" "" "photosynthesis" "FunCat" "324" "50" "" "" "transport " "FunCat" "312" "56" "" "" "chlorophyll biosynthesis" "TAIR-GO" "293" "33" "" "" "chlorophyll biosynthesis" "LitPath" "277" "31" "" "" "photosynthesis" "TAIR-GO" "254" "35" "" "" "photosystem I" "TAIR-GO" "218" "27" "" "" "Biosynthesis of steroids" "KEGG" "216" "26" "" "" "Carotenoid and abscisic acid metabolism" "LitPath" "202" "24" "" "" "carotenoid biosynthesis" "AraCyc" "198" "22" "" "" "Carotenoid biosynthesis" "BioPath" "184" "21" "" "" "carotenid biosynthesis" "LitPath" "184" "21" "" "" "photosystem II" "TAIR-GO" "170" "21" "" "" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "158" "20" "" "" "photorespiration" "AraCyc" "156" "27" "" "" "photorespiration" "TAIR-GO" "126" "19" "" "" "Transcription (chloroplast)" "BioPath" "88" "11" "" "" "transcription initiation" "TAIR-GO" "88" "11" "" "" "Translation (chloroplast)" "BioPath" "88" "15" "" "" "chloroplast thylakoid membrane protein import" "TAIR-GO" "87" "9" "" "" "carotene biosynthesis" "TAIR-GO" "84" "9" "" "" "xanthophyll cycle" "AraCyc" "78" "8" "" "" "Early light-inducible proteins" "BioPath" "74" "10" "" "" "Delta-pH pathway" "BioPath" "72" "9" "" "" "glycosylglyceride desaturation pathway" "AraCyc" "71" "8" "" "" "xanthophyll cycle" "TAIR-GO" "70" "7" "" "" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "55" "6" "" "" "plastoquinone biosynthesis" "AraCyc" "54" "6" "" "" "photoinhibition" "TAIR-GO" "51" "6" "" "" "plastoquinone biosynthesis" "TAIR-GO" "50" "5" "" "" "protein targeting, sorting and translocation" "FunCat" "45" "7" "" "" "vitamin E biosynthesis" "AraCyc" "44" "5" "" "" "response to high light intensity" "TAIR-GO" "40" "5" "" "" "xanthophyll metabolism" "TAIR-GO" "40" "4" "" "" "ORGAN DATA SET" "quantDE" "5.332652" "maxDE" "5.6167479" "ORGAN DATA SET" "Photosystems " "BioPath" "512" "6.52048586222392e-162" "76" "7.07529884819958e-29" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "330" "5.81231449616159e-43" "43" "1.03241828011239e-09" "biogenesis of chloroplast" "FunCat" "247" "2.22294325075943e-109" "37" "3.20862147830141e-20" "C-compound and carbohydrate metabolism" "FunCat" "241" "2.68865268911508e-05" "42" "0.0382678016317959" "additional photosystem II components" "BioPath" "215" "5.58537600183025e-74" "31" "3.9690250902632e-15" "Photosystem I" "BioPath" "195" "1.35924900612166e-30" "30" "1.57576353100824e-07" "photosynthesis" "FunCat" "182" "1.26955466687754e-88" "29" "8.24755391527004e-18" "Chlorophyll biosynthesis and breakdown" "BioPath" "163" "2.74103715372815e-33" "20" "4.88501920380602e-07" "photosystem I" "TAIR-GO" "161" "0" "20" "0" "Photosynthesis" "KEGG" "159" "7.04497097298679e-113" "28" "2.76740599035188e-25" "chlorophyll and phytochromobilin metabolism" "LitPath" "157" "4.29855944079053e-52" "19" "3.02258132011095e-09" "glycolysis and gluconeogenesis" "FunCat" "155" "1.82019964023192e-12" "25" "0.00222159411894224" "Chlorophyll a/b binding proteins" "BioPath" "146" "1.25405328202864e-76" "18" "4.80577296499057e-13" "Carbon fixation" "KEGG" "131" "5.37592171353221e-30" "19" "4.14184168552644e-06" "Porphyrin and chlorophyll metabolism" "KEGG" "131" "4.11928260856857e-67" "16" "3.99704375568818e-11" "chlorophyll biosynthesis" "AraCyc" "130" "1.25176244347869e-35" "17" "0.000169135257772412" "photosystem II" "TAIR-GO" "128" "0" "16" "0" "Photosystem II" "BioPath" "121" "5.50524325769681e-12" "16" "0.00288623418847700" "transport " "FunCat" "121" "0" "21" "0" "photosynthesis" "TAIR-GO" "112" "5.90809315629163e-50" "14" "3.27842119189644e-07" "Folding, Sorting and Degradation" "KEGG" "87" "0.0162475149203257" "13" "0.210282728645325" "chlorophyll binding" "TAIR-GO" "86" "3.73564906333395e-40" "10" "1.73792600851410e-06" "Calvin cycle" "AraCyc" "86" "7.34255126549328e-24" "15" "2.47690160949016e-05" "Biosynthesis of steroids" "KEGG" "83" "5.76970483283087e-08" "10" "0.00586315711493853" "Glucosinolate Metabolism" "LitPath" "80" "1.73764598093720e-16" "8" "0.00124855196723697" "chlorophyll biosynthesis" "TAIR-GO" "75" "1.50742796843003e-17" "8" "0.000562416176130499" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "72" "1.17942581008655e-22" "9" "5.03352810845182e-05" "acetate fermentation" "AraCyc" "70" "0.000119805221004803" "13" "0.0952228921173384" "biosynthesis of proto- and siroheme" "AraCyc" "70" "2.06304679623628e-10" "11" "0.00954524771278362" "transport facilitation" "FunCat" "70" "0" "12" "0" "Glycolysis / Gluconeogenesis" "KEGG" "70" "0.0111706924358249" "11" "0.0944428501520456" "Carotenoid and abscisic acid metabolism" "LitPath" "70" "3.68533466554627e-16" "9" "0.000618164861474219" "fructose degradation (anaerobic)" "AraCyc" "68" "5.51991548855985e-05" "12" "0.103858652005835" "glycolysis IV" "AraCyc" "68" "7.10124491500644e-05" "12" "0.114299241023851" "sorbitol fermentation" "AraCyc" "68" "0.000446485491513637" "12" "0.136944981721086" "Pentose phosphate pathway" "KEGG" "68" "1.62693994347181e-14" "10" "0.00222960945375513" "Synthesis of membrane lipids in plastids" "AcylLipid" "67" "3.02592748376481e-24" "8" "4.14184079239599e-05" "gluconeogenesis" "AraCyc" "65" "1.36016693896332e-06" "10" "0.0468169765242292" "Carotenoid biosynthesis" "BioPath" "64" "2.61634635215579e-18" "8" "5.4308103798248e-05" "photorespiration" "AraCyc" "64" "3.98900140964933e-19" "13" "0.000107592144305667" "carotenid biosynthesis" "LitPath" "64" "4.94169553333888e-28" "8" "2.38026075945302e-06" "carotenoid biosynthesis" "AraCyc" "62" "1.72262981494354e-28" "7" "5.61404801997542e-06" "sulfate assimilation III" "AraCyc" "61" "4.97648657515391e-05" "8" "0.036581576558218" "chlorophyll biosynthesis" "LitPath" "59" "5.16363386314574e-25" "6" "6.71186537243017e-05" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "58" "6.65427052750143e-23" "9" "4.87350311970631e-06" "Protein export" "KEGG" "57" "2.74986505069472e-17" "8" "0.00185751959421679" "porphyrin biosynthesis" "TAIR-GO" "56" "1.02807625148225e-16" "8" "0.000246610941046848" "Selenoamino acid metabolism" "KEGG" "56" "3.11351825132560e-08" "7" "0.00913022533291437" "Sulfur metabolism" "KEGG" "56" "1.89914011724703e-11" "7" "0.00104458956100910" "cysteine biosynthesis I" "AraCyc" "54" "4.64844202876491e-06" "12" "0.00200807995982000" "electron transport" "TAIR-GO" "51" "1.86190433746791e-05" "7" "0.0426187605944445" "photosynthesis light harvesting" "TAIR-GO" "50" "3.64937473502993e-26" "6" "0.000118583257313337" "light harvesting complex" "BioPath" "48" "0" "6" "0" "energy" "FunCat" "48" "0" "7" "0" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "47" "0.0447397939772946" "6" "0.253270441984485" "Glutamate metabolism" "KEGG" "47" "0.048274388646103" "5" "0.280744398932032" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "47" "0.000338646676378293" "8" "0.152200119281858" "Chloroplastic protein turnover" "BioPath" "46" "3.75023545201514e-17" "10" "7.45836454076248e-07" "mRNA processing in chloroplast" "BioPath" "46" "2.96386121483321e-18" "9" "1.45798766609484e-05" "Cysteine metabolism" "KEGG" "45" "1.71624101912393e-06" "6" "0.0169263151450807" "Transcription (chloroplast)" "BioPath" "44" "3.22007519187791e-15" "5" "0.000765323921266128" "transcription initiation" "TAIR-GO" "44" "1.17319857113318e-15" "5" "0.00163836393369467" "respiration" "FunCat" "44" "3.49220277355746e-11" "6" "0.00124947132668853" "Fructose and mannose metabolism" "KEGG" "44" "0.0406250264551327" "7" "0.0957056848679567" "lactose degradation IV" "AraCyc" "43" "0" "10" "0" "glucosinolate biosynthesis" "TAIR-GO" "40" "1.71611479809847e-08" "4" "0.0130997343028924" "photosynthesis light harvesting in photosystem I" "TAIR-GO" "40" "3.01282580718908e-20" "5" "0.000498528426408669" "aerobic respiration" "FunCat" "40" "7.10444814227827e-09" "5" "0.00713088810509996" "Benzoate degradation via hydroxylation" "KEGG" "40" "5.75071390670103e-17" "4" "0.00185899022682148" "photosynthetic electron transport" "TAIR-GO" "39" "6.04269138673662e-23" "5" "8.67603495315044e-05" "acetyl-CoA assimilation" "AraCyc" "39" "0.0188469708496689" "6" "0.160714402702543" "glyceraldehyde 3-phosphate degradation" "AraCyc" "39" "1.74180196852732e-07" "6" "0.0358257445230696" "ATP synthase components" "BioPath" "38" "1.39486540109805e-07" "6" "0.00190410194983286" "Photosystem II reaction center" "BioPath" "38" "1.52382778393630e-08" "5" "0.0121329111498202" "hypersensitive response" "TAIR-GO" "38" "1.20631798940712e-15" "4" "0.002052199682333" "glycine biosynthesis I" "AraCyc" "38" "0.0010963633491178" "9" "0.0756744239930052" "superpathway of serine and glycine biosynthesis II" "AraCyc" "38" "9.01368176709107e-12" "9" "0.000409593276922844" "pentose-phosphate pathway " "FunCat" "38" "8.80226809545764e-07" "5" "0.0401261007977358" "calmodulin binding" "TAIR-GO" "37" "8.4373152788176e-08" "5" "0.0381543696541381" "chloroplast thylakoid membrane protein import" "TAIR-GO" "37" "0" "4" "0" "glycosylglyceride desaturation pathway" "AraCyc" "37" "0" "4" "0" "Ascorbate and aldarate metabolism" "KEGG" "37" "0.000587523396953215" "5" "0.0377956442057872" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "37" "0.0255259527027429" "5" "0.0881710440754026" "MEP (methylerythritol P) pathway, plastids" "LitPath" "37" "1.08534387932712e-12" "5" "0.000883211306740554" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "36" "0" "4" "0" "ATP-dependent proteolysis" "TAIR-GO" "36" "1.36044725667604e-14" "9" "1.46037401418496e-06" "protein biosynthesis" "TAIR-GO" "36" "0" "6" "0" "mannitol degradation" "AraCyc" "36" "2.76025616699146e-07" "7" "0.0188051801775186" "sorbitol degradation" "AraCyc" "36" "8.89681089589076e-07" "7" "0.0238764460613759" "Ion channels" "KEGG" "36" "2.99957951915964e-05" "7" "0.126767323611053" "Ligand-Receptor Interaction" "KEGG" "36" "5.78436385270167e-05" "7" "0.150055315998545" "jasmonic acid biosynthesis" "AraCyc" "35" "0.000254455696048474" "5" "0.0331768990695713" "Glycine, serine and threonine metabolism" "KEGG" "35" "0.0347369324037537" "7" "0.0272872000591428" "Early light-inducible proteins" "BioPath" "34" "1.01745844832340e-10" "5" "0.000765323921266128" "Translation (chloroplast)" "BioPath" "34" "1.82464195031256e-13" "6" "3.05822209501927e-05" "photorespiration" "TAIR-GO" "34" "0" "5" "0" "starch biosynthesis" "AraCyc" "34" "0" "4" "0" "gamma-Hexachlorocyclohexane degradation" "KEGG" "33" "8.62608067114679e-06" "4" "0.0248334497503015" "ClpP protease complex " "BioPath" "32" "1.55933589318135e-16" "8" "1.55076189101083e-06" "photosystem I reaction center" "BioPath" "32" "1.64887524779537e-11" "7" "4.9613955222323e-05" "photosynthesis light harvesting in photosystem II" "TAIR-GO" "32" "1.27551514173851e-18" "4" "0.000414333571665087" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "31" "0.0347309123229686" "4" "0.115078650180807" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "30" "3.17899818567719e-06" "3" "0.0267409475642946" "pentose-phosphate shunt" "TAIR-GO" "30" "0.000455726172889375" "4" "0.0880533616419836" "glucosinolate biosynthesis from homomethionine" "AraCyc" "30" "6.27497187574072e-13" "3" "0.00181157639748328" "oxidative branch of the pentose phosphate pathway" "AraCyc" "30" "1.12286728986491e-11" "7" "0.000107737170231733" "phospholipid desaturation pathway" "AraCyc" "30" "6.27497187574072e-13" "3" "0.00181157639748328" "channel / pore class transport" "FunCat" "30" "2.92992547119038e-11" "5" "0.00713088810509996" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "30" "1.41385970593294e-13" "3" "0.0092514004907939" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "30" "6.85482514995764e-18" "3" "0.00141895549640813" "Androgen and estrogen metabolism" "KEGG" "30" "5.1316481160949e-17" "3" "0.00304174707814847" "Protein folding and associated processing" "KEGG" "30" "0.000374081681067909" "5" "0.0450179187250061" "Fluorene degradation" "KEGG" "29" "1.84285850763927e-05" "3" "0.0609446670880365" "Ferredoxin" "BioPath" "28" "3.48426768451503e-08" "6" "0.000710240934702372" "Oxygen-evolving enhancer protein" "BioPath" "28" "7.51926524881247e-13" "4" "0.000599980710158242" "Thylakoid biogenesis and photosystem assembly" "BioPath" "28" "0.0022184804077926" "3" "0.0513098883263681" "carotene biosynthesis" "TAIR-GO" "28" "0" "3" "0" "regulation of transcription" "TAIR-GO" "28" "0" "3" "0" "ascorbate glutathione cycle" "AraCyc" "28" "0.000528101748824986" "5" "0.0183631387506777" "formylTHF biosynthesis" "AraCyc" "28" "7.68433454948689e-05" "4" "0.101269361495473" "starch biosynthesis" "TAIR-GO" "27" "0.000236975113900284" "3" "0.0400276801976772" "degradation " "FunCat" "27" "0.00816937594551438" "6" "0.0372920958362745" "Cytochrome b6/f complex" "BioPath" "26" "0.000213489018692049" "3" "0.125726715472918" "photosystem I subunit precursor" "BioPath" "26" "0" "5" "0" "cytochrome b6f complex" "TAIR-GO" "26" "7.7878346366006e-09" "3" "0.0205469359830867" "response to jasmonic acid stimulus" "TAIR-GO" "26" "1.31991515061529e-05" "3" "0.0400276801976772" "photosynthetic electron transport in photosystem I" "TAIR-GO" "25" "0" "3" "0" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "25" "6.75496367171e-13" "3" "0.00197488921384892" "protein degradation " "FunCat" "25" "0.00014363615481591" "5" "0.0249305839984026" "Delta-pH pathway" "BioPath" "24" "0" "3" "0" "photosystem II type II chlorophyll a /b binding protein" "BioPath" "24" "1.13188489217483e-09" "3" "0.00265233542654261" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "24" "9.46099102874848e-14" "6" "1.81323367186435e-05" "wax biosynthesis" "TAIR-GO" "24" "0.000135526284448830" "3" "0.0400276801976772" "glycine degradation I" "AraCyc" "24" "2.53284429851061e-12" "6" "3.19849122150177e-05" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "24" "1.50535073591552e-09" "3" "0.00482206574698442" "electron transport and membrane-associated energy conservation " "FunCat" "24" "9.42153142632972e-10" "3" "0.0186685660520599" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "24" "0" "4" "0" "galactose degradation I" "AraCyc" "23" "1.74905415274793e-15" "6" "1.15580921040999e-06" "lipoxygenase pathway" "AraCyc" "23" "0.00199679909999785" "3" "0.0787934403885593" "lipid biosynthesis" "TAIR-GO" "22" "0.000199625941116078" "3" "0.00821711178258423" "cysteine biosynthesis II" "AraCyc" "22" "0.00443498633652933" "8" "0.00287384089294033" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "22" "0.044566004817809" "3" "0.110065457567197" "transported compounds (substrates)" "FunCat" "22" "0" "5" "0" "response to water deprivation" "TAIR-GO" "21" "0" "3" "0" "starch degradation" "AraCyc" "21" "0.0166278288348323" "4" "0.0507695970915796" "transcription" "FunCat" "21" "7.98123061323323e-06" "3" "0.0891985751827791" "transcriptional control" "FunCat" "21" "0.000798668202209714" "3" "0.0539652892465791" "Plastocyanin" "BioPath" "20" "0" "2" "0" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "chlorophyll catabolism" "TAIR-GO" "20" "3.92896764419816e-08" "2" "0.00939510402704824" "cysteine biosynthesis" "TAIR-GO" "20" "3.92896764419816e-08" "2" "0.00939510402704824" "oxygen evolving complex" "TAIR-GO" "20" "0" "3" "0" "photosynthetic water oxidation" "TAIR-GO" "20" "0" "2" "0" "positive regulation of transcription" "TAIR-GO" "20" "1.49733444477385e-08" "2" "0.00939510402704824" "response to ethylene stimulus" "TAIR-GO" "20" "0.0028675126574272" "5" "0.0552031919166519" "ammonia assimilation cycle" "AraCyc" "20" "0.00369939081669223" "2" "0.124980312000926" "glucose and glucose-1-phosphate degradation" "AraCyc" "20" "0.000179917871680433" "3" "0.101498258973529" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "20" "1.95728571913832e-07" "2" "0.0102962629881621" "glutamine biosynthesis I" "AraCyc" "20" "0.000671589825341902" "2" "0.0646505538622255" "nitrate assimilation pathway" "AraCyc" "20" "0.0393885882900032" "2" "0.160487994166804" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "20" "0.00565872350855847" "3" "0.0891985751827791" "nitrogen and sulfur utilization " "FunCat" "20" "0.0103404811110051" "3" "0.0398283321701065" "nucleotide metabolism" "FunCat" "20" "0" "4" "0" "chlorophyll catabolism" "LitPath" "20" "5.64323599815749e-10" "2" "0.00415484476133505" "glutamate degradation I" "AraCyc" "19" "3.34051253926686e-05" "3" "0.0177514695146146" "psbP family of thylakoid proteins" "BioPath" "18" "8.34024383498651e-08" "5" "0.000135545320995326" "Sec (secretory) pathway" "BioPath" "18" "1.21925040676516e-10" "3" "0.00265233542654261" "glycolipid biosynthesis" "TAIR-GO" "18" "0.000183617627663464" "2" "0.0316557484666462" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "glycosylglyceride biosynthesis" "AraCyc" "18" "0.0126182065741331" "2" "0.0646505538622255" "serine biosynthesis" "AraCyc" "18" "6.73135586047813e-07" "7" "0" "xanthophyll cycle" "AraCyc" "18" "0" "2" "0" "Membrane Transport" "KEGG" "18" "0.0230247862950873" "2" "0.400408310433073" "Other ion-coupled transporters" "KEGG" "18" "0.000127358511532648" "2" "0.119052275900295" "polyprenyl diphosphate biosynthesis" "LitPath" "18" "7.08855252647549e-06" "3" "0.0270220552844824" "photoinhibition" "TAIR-GO" "17" "1.16617615353392e-06" "2" "0.00939510402704824" "photosystem II assembly" "TAIR-GO" "17" "1.37625476443763e-09" "2" "0.00939510402704824" "photosystem II stabilization" "TAIR-GO" "17" "0" "2" "0" "Streptomycin biosynthesis" "KEGG" "17" "0.0200960854915505" "2" "0.143480008750640" "chlorophyll A apoprotein" "BioPath" "16" "1.62179084503483e-09" "2" "0.0117100609081856" "ATP synthesis coupled proton transport" "TAIR-GO" "16" "0.006791977186428" "2" "0.0668137034927392" "magnesium chelatase complex" "TAIR-GO" "16" "0" "2" "0" "photosystem I reaction center" "TAIR-GO" "16" "5.27562173185878e-09" "2" "0.00939510402704824" "photosystem II reaction center" "TAIR-GO" "16" "6.20977312314417e-07" "2" "0.0316557484666462" "proton transport" "TAIR-GO" "16" "0.006791977186428" "2" "0.0668137034927392" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "response to high light intensity" "TAIR-GO" "16" "3.49562953069868e-06" "2" "0.00939510402704824" "dissimilatory sulfate reduction" "AraCyc" "16" "0.0212568508233567" "2" "0.0646505538622255" "epicuticular wax biosynthesis" "AraCyc" "16" "1.88445034738368e-09" "2" "0.00288052792895574" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "16" "0.00500897954388744" "4" "0.0277075985723779" "C-compound and carbohydrate utilization " "FunCat" "16" "0" "3" "0" "Photosystem II protein" "BioPath" "14" "0.000188204379763291" "2" "0.0117100609081856" "photosynthesis, light reaction" "TAIR-GO" "14" "0.00087171910958651" "2" "0.0668137034927392" "photosystem II antenna complex" "TAIR-GO" "14" "8.96971036689627e-07" "2" "0.00939510402704824" "4-hydroxyproline degradation" "AraCyc" "14" "0.0413393883285633" "3" "0.0589483256080931" "plastoquinone biosynthesis" "AraCyc" "14" "8.04817312277894e-06" "2" "0.0102962629881621" "vitamin E biosynthesis" "AraCyc" "14" "0.0475196659325721" "2" "0.0646505538622255" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "2.90124134711604e-10" "2" "0.00199288054074963" "biosynthesis of glycosides" "FunCat" "14" "2.90124134711604e-10" "2" "0.00199288054074963" "metabolismn of primary metabolic sugars derivatives " "FunCat" "14" "2.90124134711604e-10" "2" "0.00199288054074963" "one-carbon compound metabolism" "TAIR-GO" "13" "0.000813163015209691" "2" "0.0316557484666462" "phosphate transport" "TAIR-GO" "13" "0.000493109155386719" "2" "0.0316557484666462" "starch catabolism" "TAIR-GO" "13" "8.3560875537425e-05" "2" "0.00939510402704824" "stress response" "FunCat" "13" "0" "3" "0" "Plastoquinone biosynthesis" "BioPath" "12" "0" "2" "0" "glycine decarboxylation via glycine cleavage system" "TAIR-GO" "12" "0" "2" "0" "plastid large ribosomal subunit" "TAIR-GO" "12" "0" "2" "0" "plastid organization and biogenesis" "TAIR-GO" "12" "0.00191833942586836" "2" "0.0316557484666462" "RNA processing" "TAIR-GO" "12" "0" "2" "0" "cyanate degradation" "AraCyc" "12" "0.00203181002887783" "2" "0.279586672591854" "peptidoglycan biosynthesis" "AraCyc" "12" "0.00274840493855307" "2" "0.092790004470792" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "12" "2.80313708553196e-05" "2" "0.0230232928741803" "ribose degradation" "AraCyc" "12" "0.00620610102507997" "4" "0.0192580960471606" "thiamine biosynthesis" "AraCyc" "12" "0.000502921506548844" "2" "0.0412245200013763" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "12" "0.0382055451722989" "2" "0.0646505538622255" "accessory proteins of photosynthetic electron transport " "FunCat" "12" "0" "2" "0" "electron / hydrogen transport " "FunCat" "12" "0.00130169374456115" "2" "0.0297070435015561" "protein targeting, sorting and translocation" "FunCat" "11" "0.0466659412296838" "2" "0.0936013001802343" "FtsH protease (many homologues / subcellular localization ambiguous)" "BioPath" "10" "0" "1" "0" "Other cell wall metabolism related enzymes" "BioPath" "10" "0.00564361073840767" "1" "0.0516333800444125" "ADPG pyrophosphorylase complex (sensu Eukaryota)" "TAIR-GO" "10" "0" "1" "0" "cell communication" "TAIR-GO" "10" "0" "1" "0" "cell differentiation" "TAIR-GO" "10" "0.000102751404158290" "2" "0.00939510402704824" "chalcone biosynthesis" "TAIR-GO" "10" "0" "1" "0" "chaperone cofactor dependent protein folding" "TAIR-GO" "10" "0" "1" "0" "chloride transport" "TAIR-GO" "10" "1.35289998142679e-05" "2" "0.0316557484666462" "chloroplast ATP synthase complex" "TAIR-GO" "10" "0.00159276776456219" "1" "0.0446096828015535" "chloroplast envelope" "TAIR-GO" "10" "0" "1" "0" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "fatty acid oxidation" "TAIR-GO" "10" "0" "1" "0" "glucosinolate catabolism" "TAIR-GO" "10" "0.000898751914620356" "1" "0.0446096828015535" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "lipoic acid metabolism" "TAIR-GO" "10" "0" "1" "0" "photosynthesis, dark reaction" "TAIR-GO" "10" "0" "1" "0" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "1.35289998142679e-05" "1" "0.0446096828015535" "photosynthetic electron transport in photosystem II" "TAIR-GO" "10" "0" "1" "0" "plastoquinone biosynthesis" "TAIR-GO" "10" "0.00159276776456219" "1" "0.0446096828015535" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "protein folding" "TAIR-GO" "10" "0" "1" "0" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "response to chemical substance" "TAIR-GO" "10" "0" "1" "0" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to temperature" "TAIR-GO" "10" "0.0440780697393579" "1" "0.115038840350564" "RNA binding" "TAIR-GO" "10" "0" "1" "0" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "Peptidoglycan biosynthesis" "KEGG" "10" "0.0200274058378785" "1" "0.0861551938605291" "chlorophyll a biosynthesis" "LitPath" "10" "0" "1" "0" "oxylipin pathway" "LitPath" "10" "0.000218282800876273" "1" "0.0260447213279984" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "plastochinone and phylloquinone biosynthesis" "LitPath" "10" "0.0322276427145085" "4" "0.0208651483996257" "calcium ion transport" "TAIR-GO" "9" "0.00236201533784805" "1" "0.0446096828015535" "carbohydrate biosynthesis" "TAIR-GO" "9" "0" "1" "0" "cation transport" "TAIR-GO" "9" "4.76521810921588e-05" "1" "0.0446096828015535" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "histidine biosynthesis" "TAIR-GO" "9" "0.0375006603430385" "1" "0.115038840350564" "myo-inositol biosynthesis" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "0.0375006603430385" "1" "0.115038840350564" "proteolysis and peptidolysis" "TAIR-GO" "9" "0" "1" "0" "response to light intensity" "TAIR-GO" "9" "0" "1" "0" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "sucrose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "0.000331825226567091" "1" "0.0550653301974449" "Taurine and hypotaurine metabolism" "KEGG" "9" "0.00726016283302465" "1" "0.0861551938605291" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "sulfolipid biosynthesis" "TAIR-GO" "8" "0.00959698822997732" "1" "0.0446096828015535" "xanthophyll biosynthesis " "TAIR-GO" "8" "0" "1" "0" "C-compound and carbohydrate transport " "FunCat" "8" "4.33579435210842e-05" "2" "0.00722251148754814" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "Tetracycline biosynthesis" "KEGG" "8" "0.0444917934989936" "1" "0.0554224984538405" "proton gradient regulation" "BioPath" "7" "0" "1" "0" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "photomorphogenesis" "TAIR-GO" "7" "0.032054215014677" "1" "0.115038840350564" "response to pest, pathogen or parasite" "TAIR-GO" "7" "4.71121120753149e-05" "1" "0.0446096828015535" "signal sequence binding" "TAIR-GO" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "1.706493" "maxDE" "4.737041" "STRESS DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "41" "4.86604326237297e-05" "7" "0.111238375130151" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "34" "4.27192739090435e-06" "4" "0.0332586696238013" "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" "33" "4.31673255070784e-11" "5" "0.00128689451261420" "Intermediary Carbon Metabolism" "BioPath" "32" "0.00174017519549798" "4" "0.257404975286357" "Carotenoid biosynthesis" "BioPath" "30" "1.35397763585269e-27" "3" "6.06888902337151e-05" "carotenoid biosynthesis" "AraCyc" "30" "1.78797919296827e-31" "3" "2.33475952927407e-05" "Glycolysis / Gluconeogenesis" "KEGG" "30" "2.62952105075943e-13" "4" "0.00763336086515272" "carotenid biosynthesis" "LitPath" "30" "6.94165207901262e-34" "3" "1.74044746349117e-05" "Carotenoid and abscisic acid metabolism" "LitPath" "30" "1.73236719901372e-26" "3" "0.000286707392621885" "Synthesis of membrane lipids in plastids" "AcylLipid" "29" "3.20743078031717e-20" "4" "1.72547143489934e-05" "Biosynthesis of steroids" "KEGG" "24" "2.61580817059442e-10" "3" "0.00611189353458097" "glycolysis and gluconeogenesis" "FunCat" "22" "0.000450655808104692" "3" "0.171576213034836" "photosystem I" "TAIR-GO" "21" "6.78762312338543e-24" "3" "8.79170437164802e-06" "carotene biosynthesis" "TAIR-GO" "20" "2.02379270074092e-29" "2" "1.20594118028566e-05" "Calvin cycle" "AraCyc" "20" "7.66227406782178e-12" "4" "0.000672347135369764" "Glycine, serine and threonine metabolism" "KEGG" "20" "4.60744119037393e-12" "4" "0.000242137818379157" "Translation (chloroplast)" "BioPath" "18" "5.32384415851482e-20" "3" "6.8736579895034e-06" "acetate fermentation" "AraCyc" "18" "7.83669779508247e-07" "3" "0.0394716887244757" "fructose degradation (anaerobic)" "AraCyc" "18" "3.20560417727363e-07" "3" "0.0309819515783489" "glycolysis I" "AraCyc" "18" "0.00356898172187233" "3" "0.225683605419298" "glycolysis IV" "AraCyc" "18" "3.59850937151492e-07" "3" "0.0325836832330497" "mannitol degradation" "AraCyc" "18" "7.23804876191562e-15" "3" "0.00113209115931763" "sorbitol degradation" "AraCyc" "18" "1.58383119504024e-14" "3" "0.00131878010833263" "sorbitol fermentation" "AraCyc" "18" "8.7212813960272e-07" "3" "0.0359312248793642" "Gluconeogenesis from lipids in seeds" "BioPath" "16" "0.00961928031065194" "2" "0.184730645666683" "mRNA processing in chloroplast" "BioPath" "16" "1.06857498533370e-14" "3" "8.95522297169431e-05" "pentose-phosphate pathway " "FunCat" "16" "2.83280871086595e-11" "2" "0.00641620007711065" "Carbon fixation" "KEGG" "16" "4.25178350832981e-05" "2" "0.087014086306348" "Fructose and mannose metabolism" "KEGG" "16" "6.54086291430565e-07" "2" "0.0374403339577377" "Glycerolipid metabolism" "KEGG" "16" "3.21515120109486e-08" "3" "0.00179295933410289" "Pentose phosphate pathway" "KEGG" "16" "1.44532356989271e-08" "2" "0.0278260397027852" "additional photosystem II components" "BioPath" "15" "0.000844543237728815" "2" "0.052035663047061" "transport " "FunCat" "15" "1.03029916548936e-26" "3" "0" "Transcription (chloroplast)" "BioPath" "14" "5.26915399640913e-12" "2" "0.000326660785279471" "photosystem II" "TAIR-GO" "14" "6.75303912209132e-16" "2" "0.000116659620446954" "transcription initiation" "TAIR-GO" "14" "1.37834334001491e-11" "2" "0.000621640528581623" "photosynthesis" "FunCat" "14" "8.33103456001265e-05" "2" "0.0473044326707397" "Pyruvate metabolism" "KEGG" "14" "0.00176659548171896" "2" "0.109903104717257" "amylopectin biosynthesis" "TAIR-GO" "13" "5.4519490470784e-21" "2" "1.20594118028566e-05" "pectin biosynthesis" "TAIR-GO" "13" "5.4519490470784e-21" "2" "1.20594118028566e-05" "starch biosynthesis" "AraCyc" "13" "0" "2" "0" "lactose degradation IV" "AraCyc" "12" "4.37827805171482e-16" "4" "4.46263172726751e-08" "biogenesis of chloroplast" "FunCat" "12" "0.021315137286346" "2" "0.103306665096276" "Translation factors" "KEGG" "12" "0.00167329451439949" "4" "0.0120419916036124" "Delta-pH pathway" "BioPath" "10" "1.87535797534404e-12" "1" "0.00139084581147572" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "10" "2.17075401696896e-05" "1" "0.0314162778918116" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "3.95305262030045e-10" "1" "0.00312911475886238" "lipid metabolism" "TAIR-GO" "10" "2.91564872417861e-11" "1" "0.00158827934994441" "pentose-phosphate shunt" "TAIR-GO" "10" "1.55420431216207e-06" "1" "0.0305420709506902" "phospholipid metabolism" "TAIR-GO" "10" "1.10071904558336e-13" "1" "0.000537466057850042" "photosynthesis" "TAIR-GO" "10" "0.000339157164980233" "1" "0.07813876075846" "photosynthesis light harvesting" "TAIR-GO" "10" "6.84699569838286e-08" "1" "0.0137527008649702" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "10" "4.42748037377441e-11" "1" "0.00312911475886238" "response to light" "TAIR-GO" "10" "0.00352248877071419" "1" "0.214322301153778" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "phospholipid biosynthesis II" "AraCyc" "10" "1.10925772499559e-05" "1" "0.0646271200836399" "triacylglycerol biosynthesis" "AraCyc" "10" "1.56972743837587e-09" "1" "0.00510403898257659" "xanthophyll cycle" "AraCyc" "10" "1.42215622450512e-15" "1" "0.000357589709847945" "protein modification " "FunCat" "10" "7.6430945063248e-09" "1" "0.0345713930990618" "Benzoate degradation via CoA ligation" "KEGG" "10" "0.0211334357563564" "3" "0.0547449945610017" "Citrate cycle (TCA cycle)" "KEGG" "10" "0.000721404602988342" "1" "0.141622028131200" "Inositol phosphate metabolism" "KEGG" "10" "0.0390057619908371" "3" "0.0706924701824075" "Nicotinate and nicotinamide metabolism" "KEGG" "10" "0.00810602554818541" "3" "0.0426044070135702" "metabolism of acyl-lipids in mitochondria" "AcylLipid" "10" "0.00133847910980995" "1" "0.0927162854331065" "Chloroplastic protein import via envelope membrane" "BioPath" "9" "8.18642648824055e-05" "1" "0.063367196681834" "Toc apparatus" "BioPath" "9" "2.13247402848181e-06" "1" "0.0227806165038824" "protein-chloroplast targeting" "TAIR-GO" "9" "9.4551474612469e-09" "1" "0.00513741818447268" "chloroplast transport " "FunCat" "9" "4.85188504588921e-08" "1" "0.0139233771871954" "protein targeting, sorting and translocation" "FunCat" "9" "8.12895397914562e-09" "1" "0.0112726244769992" "transport routes " "FunCat" "9" "3.35044163097233e-06" "1" "0.0430478352852384" "Early light-inducible proteins" "BioPath" "8" "2.03871573838741e-06" "1" "0.00920075356757606" "response to high light intensity" "TAIR-GO" "8" "3.51142374066925e-09" "1" "0.00158827934994441" "lysine biosynthesis I" "AraCyc" "8" "1.39651181277329e-05" "3" "0.000239082440425475" "proton gradient regulation" "BioPath" "7" "0" "1" "0" "electron transport" "TAIR-GO" "7" "0.0126673801685505" "1" "0.07813876075846" "fatty acid desaturation" "TAIR-GO" "7" "5.44484966986173e-08" "1" "0.00158827934994441" "gibberellic acid biosynthesis" "TAIR-GO" "7" "0.00211083298452110" "1" "0.0258327376767104" "photoinhibition" "TAIR-GO" "7" "1.07371676582796e-07" "1" "0.00158827934994441" "photomorphogenesis" "TAIR-GO" "7" "2.53494293772688e-09" "1" "0.00158827934994441" "photosynthetic electron transport" "TAIR-GO" "7" "5.09244441922479e-06" "1" "0.0075913844489122" "photosynthetic electron transport in photosystem I" "TAIR-GO" "7" "5.44484966986173e-08" "1" "0.00158827934994441" "glycosylglyceride desaturation pathway" "AraCyc" "7" "2.33578978009385e-07" "1" "0.00209285955638002" "starch degradation" "AraCyc" "7" "0.000127371690596496" "1" "0.0319847211370027" "mRNA synthesis " "FunCat" "7" "0.00132916043877511" "1" "0.0888551460230797" "RNA synthesis " "FunCat" "7" "0.00132916043877511" "1" "0.0888551460230797" "transcription" "FunCat" "7" "5.51043579461823e-06" "1" "0.0268460946815752" "transcriptional control" "FunCat" "7" "4.16821266826077e-05" "1" "0.0199395741868966" "HORMONE DATA SET" "quantDE" "0.9404181" "maxDE" "3.5309775" "HORMONE DATA SET" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "130" "2.08743390554877e-40" "17" "3.24455192480038e-08" "biogenesis of chloroplast" "FunCat" "76" "9.2302193223956e-35" "9" "5.8358358265293e-05" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "54" "8.25318279823262e-22" "9" "0.00151617571863516" "Carotenoid and abscisic acid metabolism" "LitPath" "50" "1.55600768409257e-19" "6" "0.000404344103290816" "transport " "FunCat" "49" "0" "10" "0" "Carotenoid biosynthesis" "BioPath" "44" "7.64554358903118e-32" "5" "4.26399052805172e-06" "carotenoid biosynthesis" "AraCyc" "44" "2.62018012506715e-43" "5" "6.93320276106024e-08" "carotenid biosynthesis" "LitPath" "44" "4.13630504091704e-25" "5" "4.13314408206101e-05" "Phenylpropanoid pathway" "LitPath" "44" "0.0137080564631723" "6" "0.360269191221361" "Chlorophyll biosynthesis and breakdown" "BioPath" "40" "3.32909995170744e-09" "5" "0.0042455271111103" "core phenylpropanoid metabolism" "BioPath" "40" "1.63600284841335e-08" "4" "0.0630612887886887" "lignin biosynthesis" "AraCyc" "40" "1.46157879159796e-18" "4" "0.00643183767830847" "additional photosystem II components" "BioPath" "36" "5.012344468447e-07" "5" "0.00986530900996358" "Biosynthesis of steroids" "KEGG" "34" "1.7088880667976e-08" "5" "0.00386071315576619" "chlorophyll and phytochromobilin metabolism" "LitPath" "34" "0.00515253329173717" "4" "0.0867501119659025" "Biosynthesis of prenyl diphosphates" "BioPath" "32" "0.000454349534593684" "5" "0.0175323650410500" "chlorophyll biosynthesis" "AraCyc" "30" "2.33472658768173e-10" "4" "0.0129596796746588" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "28" "1.03037105945484e-17" "3" "0.00175335699209372" "Folding, Sorting and Degradation" "KEGG" "27" "0.0148041416378059" "6" "0.0650121223503553" "photosynthesis" "FunCat" "26" "2.38993548002959e-06" "4" "0.0216022469902913" "transport facilitation" "FunCat" "26" "0" "6" "0" "transport routes " "FunCat" "25" "6.00251422404377e-17" "4" "0.000365836529884653" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "24" "1.06529540142920e-10" "3" "0.00263553525192570" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "22" "5.30716164095814e-15" "3" "0.00132317399662831" "mRNA processing in chloroplast" "BioPath" "20" "1.32482227184560e-12" "4" "0.000146037094565675" "chloroplast thylakoid membrane protein import" "TAIR-GO" "20" "7.51367854084976e-20" "2" "0.000200395449261004" "lignin biosynthesis" "TAIR-GO" "20" "4.74271759456737e-11" "2" "0.00366913995212626" "phenylpropanoid metabolism" "TAIR-GO" "20" "1.25776288201295e-14" "2" "0.000948388825002128" "response to UV" "TAIR-GO" "20" "2.95910148246396e-09" "2" "0.0112034051601615" "ascorbate glutathione cycle" "AraCyc" "20" "1.06342225969485e-12" "2" "0.00855140227274302" "flavonoid biosynthesis" "AraCyc" "20" "1.91244070295489e-10" "2" "0.0359718408712874" "suberin biosynthesis" "AraCyc" "20" "6.40575940906261e-10" "2" "0.0119769112600808" "Ascorbate and aldarate metabolism" "KEGG" "20" "2.62592879396734e-07" "2" "0.048974859022909" "Benzoate degradation via hydroxylation" "KEGG" "20" "6.2899558375025e-14" "2" "0.00367604890032527" "Porphyrin and chlorophyll metabolism" "KEGG" "20" "5.15592147040855e-06" "2" "0.0593767634149129" "Chloroplastic protein import via envelope membrane" "BioPath" "19" "2.07672935214433e-07" "3" "0.0114046416464302" "Toc apparatus" "BioPath" "19" "1.00487510329841e-10" "3" "0.00131188533287524" "monoterpenoid biosynthesis" "TAIR-GO" "19" "8.68269153048206e-18" "2" "0.000200395449261004" "monoterpene biosynthesis" "LitPath" "19" "3.56481978596533e-10" "2" "0.00339049296435174" "stress response" "FunCat" "18" "0" "4" "0" "Photosynthesis" "KEGG" "18" "2.11162125055248e-05" "4" "0.00430037840773716" "photoinhibition" "TAIR-GO" "17" "5.18544231062708e-19" "2" "5.14979783075349e-05" "glycosylglyceride desaturation pathway" "AraCyc" "17" "5.58796905275122e-18" "2" "7.76214669987284e-05" "Membrane Transport" "KEGG" "17" "8.79380529868266e-10" "3" "0.0054407254786332" "Synthesis of membrane lipids in plastids" "AcylLipid" "17" "3.23247123003589e-08" "2" "0.00450285022331858" "Early light-inducible proteins" "BioPath" "16" "5.79549493366071e-10" "2" "0.00333300278403567" "Transcription (chloroplast)" "BioPath" "16" "1.35423481641906e-08" "2" "0.00333300278403567" "carotenoid biosynthesis" "TAIR-GO" "16" "2.27082995650957e-09" "2" "0.00251388359213742" "transcription initiation" "TAIR-GO" "16" "1.06283874400134e-09" "2" "0.00251388359213742" "biosynthesis of proto- and siroheme" "AraCyc" "16" "0.000232791223220159" "3" "0.0244985874556905" "formylTHF biosynthesis" "AraCyc" "16" "9.88509996318068e-10" "2" "0.0119769112600808" "chloroplast transport " "FunCat" "15" "1.30839789835119e-10" "2" "0.00486114051372852" "protein targeting, sorting and translocation" "FunCat" "15" "6.4655186442631e-12" "2" "0.00349621750039575" "Other ion-coupled transporters" "KEGG" "15" "6.40457181902755e-11" "2" "0.00641705695297019" "ascorbic acid biosynthesis" "BioPath" "14" "0.00447485396799252" "2" "0.077422513544193" "Delta-pH pathway" "BioPath" "14" "9.23952414624032e-14" "2" "0.000109939843477038" "Translation (chloroplast)" "BioPath" "14" "5.75854289439215e-09" "2" "0.00333300278403567" "porphyrin biosynthesis" "TAIR-GO" "14" "5.29913790552903e-06" "2" "0.0112034051601615" "ATP synthesis" "KEGG" "14" "0.00275967198189758" "4" "0.00989684988472208" "Methane metabolism" "KEGG" "14" "0.00657635261376537" "5" "0.0520720116618568" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "14" "0.0487615039984589" "3" "0.0537170241208914" "Prostaglandin and leukotriene metabolism" "KEGG" "14" "6.78196491138106e-05" "5" "0.02034669803614" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "14" "3.77254825588142e-05" "2" "0.0338335260700714" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "14" "0.00723485302760566" "2" "0.0768284142595375" "polyprenyl diphosphate biosynthesis" "LitPath" "14" "1.04237526001979e-07" "2" "0.0161893735255687" "starch degradation" "AraCyc" "13" "2.81322245675686e-07" "2" "0.00708719757302003" "cysteine biosynthesis I" "AraCyc" "12" "0.00497095673244759" "3" "0.0207382229970249" "sulfate assimilation III" "AraCyc" "12" "0.0285610205943990" "2" "0.0597067246472601" "Protein folding and associated processing" "KEGG" "12" "0.000337339785566854" "3" "0.0100307700125864" "carbon monoxide dehydrogenase pathway" "AraCyc" "11" "4.1409918226021e-06" "4" "0.000823008971005319" "detoxification" "FunCat" "11" "0" "2" "0" "Plastocyanin" "BioPath" "10" "1.38542921160629e-09" "1" "0.00231222686677898" "Plastoquinone biosynthesis" "BioPath" "10" "1.48844352309706e-13" "1" "0.00231222686677898" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "10" "0.000198807716352795" "1" "0.0305134862785145" "Tocopherol biosynthesis" "BioPath" "10" "6.74313802284928e-05" "1" "0.0210003170554469" "aromatic amino acid family biosynthesis" "TAIR-GO" "10" "0.00703291600790803" "1" "0.0952484018151232" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "10" "0.00146657166655944" "1" "0.0724823466010306" "carotene metabolism" "TAIR-GO" "10" "8.80112572892089e-11" "1" "0.00140260465918161" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "1.94032596706478e-08" "1" "0.00410481802092975" "fatty acid biosynthesis" "TAIR-GO" "10" "0.0164591123087535" "1" "0.107304555200969" "fatty acid oxidation" "TAIR-GO" "10" "0" "1" "0" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "jasmonic acid biosynthesis" "TAIR-GO" "10" "0.0302341770327589" "1" "0.158929192674640" "lipid biosynthesis" "TAIR-GO" "10" "6.11428712770896e-06" "1" "0.0130238027111889" "lipoic acid metabolism" "TAIR-GO" "10" "0" "1" "0" "phenylpropanoid biosynthesis" "TAIR-GO" "10" "6.11428712770896e-06" "1" "0.0130238027111889" "photosystem I" "TAIR-GO" "10" "3.99568439162656e-06" "1" "0.0260401980064934" "photosystem II" "TAIR-GO" "10" "1.69073885462889e-07" "1" "0.0130238027111889" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "10" "2.89295782244743e-08" "1" "0.0080092405925985" "phytochromobilin biosynthesis" "TAIR-GO" "10" "1.94032596706478e-08" "1" "0.00410481802092975" "plastoquinone biosynthesis" "TAIR-GO" "10" "8.80112572892089e-11" "1" "0.00140260465918161" "response to oxidative stress" "TAIR-GO" "10" "5.20343590617774e-09" "1" "0.0130238027111889" "response to pathogenic fungi" "TAIR-GO" "10" "5.20343590617774e-09" "1" "0.00410481802092975" "vitamin E biosynthesis" "TAIR-GO" "10" "5.57140989186584e-07" "1" "0.0080092405925985" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "de novo biosynthesis of purine nucleotides II" "AraCyc" "10" "0.00127668030998468" "2" "0.0689062638394794" "fatty acid oxidation pathway" "AraCyc" "10" "0.00344259444366805" "1" "0.093432973184796" "isoleucine degradation I" "AraCyc" "10" "0.00344259444366805" "1" "0.138319729923083" "isoleucine degradation III" "AraCyc" "10" "7.18068217672023e-06" "1" "0.0407690554046187" "leucine degradation I" "AraCyc" "10" "0.00344259444366805" "1" "0.138319729923083" "leucine degradation II" "AraCyc" "10" "7.18068217672023e-06" "1" "0.0407690554046187" "phenylpropanoid biosynthesis" "AraCyc" "10" "1.12298971762472e-09" "1" "0.0103090978110135" "phospholipid desaturation pathway" "AraCyc" "10" "2.90035552621593e-07" "1" "0.00699700581538215" "photorespiration" "AraCyc" "10" "0.00214546012210988" "1" "0.237270147565383" "plastoquinone biosynthesis" "AraCyc" "10" "3.0998118480891e-10" "1" "0.00427428015115586" "vitamin E biosynthesis" "AraCyc" "10" "1.41191556370878e-06" "1" "0.0141769433920668" "xanthophyll cycle" "AraCyc" "10" "6.09425724174725e-13" "1" "0.00073851685339123" "detoxification by modification" "FunCat" "10" "4.76036461213406e-12" "1" "0.00395396572193763" "energy" "FunCat" "10" "4.76036461213406e-12" "2" "4.90125193702229e-05" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "nucleotide metabolism" "FunCat" "10" "0" "2" "0" "protein modification " "FunCat" "10" "1.22057225719302e-05" "1" "0.115798660919095" "transport ATPases" "FunCat" "10" "0.0360180763594429" "2" "0.112114710960657" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "10" "2.59482825167089e-06" "1" "0.0341589139395802" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "10" "1.94293191726445e-07" "1" "0.0151984163663939" "Androgen and estrogen metabolism" "KEGG" "10" "3.17518632357153e-07" "1" "0.0208160578489648" "Bile acid biosynthesis" "KEGG" "10" "0.000445012407262777" "1" "0.0979029455053524" "Fatty acid biosynthesis (path 2)" "KEGG" "10" "5.27296940858214e-06" "1" "0.041779630199394" "Fluorene degradation" "KEGG" "10" "0.000747335404392156" "1" "0.0875170821848509" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "0.00245644212611003" "1" "0.108615448736665" "Terpenoid biosynthesis" "KEGG" "10" "0.0103462911417563" "1" "0.165984655515161" "metabolism of acyl-lipids in mitochondria" "AcylLipid" "10" "0.00115735109994518" "1" "0.0781224109386125" "Synthesis of fatty acids in plastids" "AcylLipid" "10" "0.0255889357073730" "1" "0.179074120876289" "chlorophyll a biosynthesis" "LitPath" "10" "0" "1" "0" "general phenylpropanoid pathway" "LitPath" "10" "0" "1" "0" "phytochromobilin biosynthesis" "LitPath" "10" "0.0137895633299668" "1" "0.087955467578518" "histidine biosynthesis" "TAIR-GO" "9" "3.25839776520799e-08" "1" "0.00410481802092975" "phosphate transport" "TAIR-GO" "9" "5.09453811562415e-08" "1" "0.0080092405925985" "protein-chloroplast targeting" "TAIR-GO" "9" "2.85664829221274e-06" "1" "0.0130238027111889" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "histidine biosynthesis" "AraCyc" "9" "0.000268030518818213" "1" "0.0690901087360564" "histidine biosynthesis I" "AraCyc" "9" "0.000103232548477351" "1" "0.0615227704281423" "monoterpene biosynthesis" "AraCyc" "9" "8.99110071563223e-09" "1" "0.00217595080907729" "plant monoterpene biosynthesis" "AraCyc" "9" "5.48935276905751e-11" "1" "0.00073851685339123" "Histidine metabolism" "KEGG" "9" "0.000854495997362748" "1" "0.130890240503597" "carotene biosynthesis" "TAIR-GO" "8" "1.41900367864196e-06" "1" "0.00410481802092975" "chloride transport" "TAIR-GO" "8" "7.02658213085473e-10" "2" "0.000200395449261004" "response to high light intensity" "TAIR-GO" "8" "6.92850446927876e-07" "1" "0.00410481802092975" "lysine biosynthesis I" "AraCyc" "8" "0.000894477138413043" "2" "0.0101801781318264" "tRNA charging pathway" "AraCyc" "8" "0.0219117876706916" "4" "0.00851634182232166" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "translation" "FunCat" "8" "0.00210901888888529" "3" "0.00539522107529646" "transported compounds (substrates)" "FunCat" "8" "0" "2" "0" "Aminoacyl-tRNA biosynthesis" "KEGG" "8" "0.0224135873596247" "4" "0.0109764039810840" "Lysine biosynthesis" "KEGG" "8" "0.000248401244247956" "2" "0.00641705695297019" "N-Glycan biosynthesis" "KEGG" "8" "0.00179618871642782" "1" "0.119621606113572" "Replication complex" "KEGG" "8" "1.00533185068905e-05" "2" "0.00493210308685136" "fatty acid desaturation" "TAIR-GO" "7" "5.76283034387542e-06" "1" "0.00410481802092975" "proteasome regulatory particle, base subcomplex (sensu Eukaryota)" "TAIR-GO" "7" "0.00793258842632358" "1" "0.0518681690622401" "MUTANT DATA SET" "quantDE" "2.028318" "maxDE" "7.526833488" "MUTANT DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "213" "2.93122503294157e-06" "37" "0.0443880949614819" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "212" "4.31520686750786e-27" "28" "4.28691188781064e-07" "Photosystems " "BioPath" "186" "2.90137298222949e-14" "23" "0.00641928619590293" "Intermediary Carbon Metabolism" "BioPath" "152" "0.0213373541644209" "25" "0.157034661571549" "biogenesis of chloroplast" "FunCat" "148" "1.34914166958697e-38" "23" "6.33789508668866e-09" "transport " "FunCat" "127" "0" "22" "0" "Carbon fixation" "KEGG" "114" "2.82556355188289e-18" "19" "3.11551617724034e-05" "additional photosystem II components" "BioPath" "104" "5.38181052552786e-19" "13" "0.000338274950027191" "glycolysis and gluconeogenesis" "FunCat" "102" "0.000888155702974784" "18" "0.0519617325424291" "Pyruvate metabolism" "KEGG" "102" "2.47162453181767e-09" "15" "0.00821605702760882" "photosynthesis" "FunCat" "92" "4.8227455094148e-21" "14" "3.71835551192253e-05" "Chlorophyll biosynthesis and breakdown" "BioPath" "85" "7.12225201663335e-11" "11" "0.000789217354743287" "Chlorophyll a/b binding proteins" "BioPath" "80" "7.18988665311693e-26" "10" "6.80660887249337e-06" "Glycolysis / Gluconeogenesis" "KEGG" "79" "0.00173606744525319" "14" "0.0326452165201108" "chlorophyll and phytochromobilin metabolism" "LitPath" "79" "1.00547010054227e-12" "10" "0.00106580801559667" "chlorophyll biosynthesis" "TAIR-GO" "75" "7.05678943501474e-32" "8" "1.09178832143891e-05" "transport facilitation" "FunCat" "75" "0" "12" "0" "Biosynthesis of steroids" "KEGG" "75" "0.000126059309336843" "8" "0.084689046156787" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "72" "1.07840683867994e-13" "8" "0.0146780548656193" "Selenoamino acid metabolism" "KEGG" "72" "1.44578805036844e-14" "9" "0.001580499649925" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "65" "0.0249933867998885" "9" "0.307265783167433" "Calvin cycle" "AraCyc" "64" "7.90809078989392e-13" "12" "0.000576774523929338" "chlorophyll biosynthesis" "AraCyc" "64" "2.92638906276862e-05" "8" "0.219036416896162" "Porphyrin and chlorophyll metabolism" "KEGG" "57" "4.99882338639009e-08" "7" "0.0101901744896224" "Citrate cycle (TCA cycle)" "KEGG" "54" "2.54068337958615e-05" "7" "0.102023404834357" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "52" "1.3777425807962e-17" "7" "7.4011179896473e-05" "TCA cycle variation VIII" "AraCyc" "52" "0.00252590201530591" "8" "0.171075468157785" "Carotenoid and abscisic acid metabolism" "LitPath" "52" "8.81164608952452e-12" "6" "0.00943760343660158" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "51" "0.000191529979184574" "7" "0.075276001703615" "Glycine, serine and threonine metabolism" "KEGG" "51" "7.36426554039663e-06" "8" "0.0207181699961404" "sterol biosynthesis" "BioPath" "50" "0.000838727307863506" "5" "0.130295402274651" "chlorophyll binding" "TAIR-GO" "50" "2.62123745637814e-18" "6" "0.000518506259487363" "gluconeogenesis" "AraCyc" "50" "0.00154666877923491" "8" "0.115953656274501" "Methionine metabolism" "KEGG" "50" "1.71818140049090e-12" "5" "0.0237225588767547" "Cysteine metabolism" "KEGG" "49" "3.00159155075436e-07" "7" "0.0101901744896224" "chlorophyll biosynthesis" "LitPath" "49" "5.18117721837553e-22" "5" "0.000187449063637075" "photorespiration" "AraCyc" "48" "9.27727410485412e-11" "8" "0.0243620462884739" "TCA cycle -- aerobic respiration" "AraCyc" "48" "0.00304017732988935" "7" "0.252386817827821" "Sulfur metabolism" "KEGG" "48" "9.20209250231386e-07" "7" "0.00249686614720108" "Synthesis of fatty acids in plastids" "AcylLipid" "48" "1.13651629077889e-05" "8" "0.0133280274436360" "development" "TAIR-GO" "47" "0.010903410803389" "6" "0.182410126586741" "Ascorbate and aldarate metabolism" "KEGG" "47" "8.87838967473465e-07" "6" "0.0218417742529907" "Carotenoid biosynthesis" "BioPath" "46" "1.75229102044523e-14" "5" "0.00152115797891847" "fatty acid biosynthesis" "TAIR-GO" "46" "7.9745706665633e-12" "6" "0.00153805101440715" "carotenoid biosynthesis" "AraCyc" "46" "4.88124114324506e-16" "5" "0.000587451463930671" "carotenid biosynthesis" "LitPath" "46" "5.6922224790235e-18" "5" "0.000837015868143632" "Alanine and aspartate metabolism" "KEGG" "45" "3.20646836017785e-05" "6" "0.064499570878981" "serine-isocitrate lyase pathway" "AraCyc" "44" "0.0398543964345784" "6" "0.357472270184779" "biosynthesis of proto- and siroheme" "AraCyc" "42" "0.0129637880027877" "7" "0.148639079286478" "fatty acid biosynthesis -- initial steps" "AraCyc" "42" "6.96954929858557e-05" "7" "0.0452156374451335" "TCA cycle variation IV" "AraCyc" "42" "0.0320209731409494" "7" "0.215374570243891" "Pentose phosphate pathway" "KEGG" "42" "0.00349548668857219" "9" "0.0179443226359031" "brassinosteroid biosynthesis" "LitPath" "42" "2.32312621415917e-05" "5" "0.0350113466868799" "sterol and brassinosteroid biosynthesis" "LitPath" "42" "3.66584001794117e-09" "5" "0.00598721354282595" "sterol biosynthesis" "TAIR-GO" "40" "3.37366341622674e-05" "4" "0.109717987175616" "leucine biosynthesis" "AraCyc" "40" "2.76335240342671e-18" "6" "0.00225436144928469" "Valine, leucine and isoleucine biosynthesis" "KEGG" "40" "0.000467222146487821" "6" "0.064499570878981" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "39" "0.0317146366287214" "8" "0.127330599472367" "Branched-chain amino acids from aspartate" "BioPath" "38" "0.00243995573471162" "5" "0.112363076317357" "acetyl-CoA assimilation" "AraCyc" "38" "0.00641189133974427" "5" "0.222726307406647" "glyoxylate cycle" "AraCyc" "38" "8.93666882501099e-05" "5" "0.0655189887486922" "ATP synthesis" "KEGG" "38" "0.0158427315923814" "7" "0.0909838904468322" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "38" "1.31453327058575e-07" "5" "0.0237225588767547" "calmodulin binding" "TAIR-GO" "37" "1.39698969083189e-14" "5" "0.00365479006898837" "cysteine biosynthesis I" "AraCyc" "37" "0.0234071773933044" "7" "0.119684183975463" "Protein folding and associated processing" "KEGG" "37" "2.570873572198e-06" "6" "0.0269518203312237" "ascorbic acid biosynthesis" "BioPath" "36" "0.000162999383386333" "5" "0.0546450632560618" "mixed acid fermentation" "AraCyc" "36" "0.00633485416638617" "6" "0.154954863365880" "glycine biosynthesis I" "AraCyc" "35" "0.00128426089073557" "6" "0.313466385867428" "lactose degradation IV" "AraCyc" "35" "0" "8" "0" "Protein folding / chaperonins (chloroplast)" "BioPath" "34" "8.28350263907487e-09" "5" "0.00690207386988535" "photorespiration" "TAIR-GO" "34" "0" "5" "0" "formaldehyde assimilation I (serine pathway)" "AraCyc" "34" "0.00848281815034627" "5" "0.244965297270264" "methionine degradation I" "AraCyc" "34" "5.1323693428595e-14" "4" "0.0050099785164027" "growth" "TAIR-GO" "33" "0.0190167153424464" "4" "0.196804668991267" "Butanoate metabolism" "KEGG" "33" "0.0017611683528065" "4" "0.163936695502175" "ATP-dependent proteolysis" "TAIR-GO" "32" "1.53544441380837e-17" "8" "4.31150797788554e-07" "TCA cycle variation II" "AraCyc" "32" "5.00363274211145e-08" "5" "0.0156451653268092" "aerobic respiration" "FunCat" "32" "1.04029719809742e-06" "5" "0.0036406095307326" "respiration" "FunCat" "32" "1.04029719809742e-06" "5" "0.0036406095307326" "Glyoxylate and dicarboxylate metabolism" "KEGG" "32" "0.0188188070096564" "4" "0.228572412387920" "transported compounds (substrates)" "FunCat" "31" "0" "5" "0" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "31" "0.00673814342220473" "4" "0.088656088405366" "Glucosyltransferases for benzoic acids" "BioPath" "30" "0.0128890980860807" "3" "0.0878305987131159" "light harvesting complex" "BioPath" "30" "4.66956894316238e-14" "4" "0.000239800373197445" "formylTHF biosynthesis" "AraCyc" "30" "1.17257921319132e-06" "5" "0.0209796483749333" "isoleucine biosynthesis I" "AraCyc" "30" "7.07691222124602e-10" "5" "0.0113280668942137" "phenylalanine degradation I" "AraCyc" "30" "0.0112206310054565" "5" "0.124208152764593" "valine biosynthesis" "AraCyc" "30" "7.07691222124602e-10" "5" "0.0113280668942137" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "30" "4.86567841931373e-06" "3" "0.0745399559442037" "energy" "FunCat" "30" "0" "5" "0" "Benzoate degradation via hydroxylation" "KEGG" "30" "1.57795435001622e-08" "3" "0.0223911371645999" "Terpenoid biosynthesis" "KEGG" "30" "0.0112651640267937" "3" "0.256284794392832" "fatty acid oxidation pathway" "AraCyc" "29" "0.0176207165015606" "3" "0.221787149888683" "degradation " "FunCat" "29" "0.000109457559496367" "6" "0.0192776282938474" "protein degradation " "FunCat" "29" "3.75933115201434e-08" "6" "0.00291376067192255" "Cyanoamino acid metabolism" "KEGG" "29" "0.00048165537759185" "4" "0.163936695502175" "Fluorene degradation" "KEGG" "29" "6.62876694384265e-05" "3" "0.0906909189197218" "gamma-Hexachlorocyclohexane degradation" "KEGG" "29" "0.00104144629878922" "3" "0.131340361888938" "Chloroplastic protein import via envelope membrane" "BioPath" "28" "0.000356529957072546" "6" "0.00932384028185355" "Chloroplastic protein turnover" "BioPath" "28" "4.95179854362403e-09" "7" "3.22623395663700e-05" "ClpP protease complex " "BioPath" "28" "1.93294126985507e-17" "7" "8.54968325746482e-07" "carotene biosynthesis" "TAIR-GO" "28" "0" "3" "0" "aspartate degradation II" "AraCyc" "28" "0.000207448768684731" "4" "0.0450591090679507" "plant / fungal specific systemic sensing and response " "FunCat" "28" "0.000565407672165873" "3" "0.149810161165441" "plant hormonal regulation" "FunCat" "28" "0.000565407672165873" "3" "0.149810161165441" "Fatty acid biosynthesis (path 1)" "KEGG" "28" "0.000168223454856951" "4" "0.0639317559056991" "Protein export" "KEGG" "28" "0.0156783559854808" "4" "0.251595938918543" "galactose degradation I" "AraCyc" "27" "7.65899191742751e-24" "6" "5.6508415268859e-07" "isoleucine degradation I" "AraCyc" "27" "0.0479252035150266" "4" "0.187909112086588" "isoleucine degradation III" "AraCyc" "27" "1.58181144021249e-07" "4" "0.0126300629094216" "leucine degradation I" "AraCyc" "27" "0.0479252035150266" "4" "0.187909112086588" "leucine degradation II" "AraCyc" "27" "1.58181144021249e-07" "4" "0.0126300629094216" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "26" "6.23119666385702e-15" "3" "0.000334685665781598" "photosystem I" "TAIR-GO" "26" "3.61009242838918e-12" "3" "0.00727515048994472" "homocysteine and cysteine interconversion" "AraCyc" "26" "1.77969712984127e-08" "4" "0.0050099785164027" "superpathway of serine and glycine biosynthesis II" "AraCyc" "26" "1.33729437712870e-05" "5" "0.0540643290426051" "Pantothenate and CoA biosynthesis" "KEGG" "26" "0.000802835020257818" "3" "0.203227902755971" "Bile acid biosynthesis" "KEGG" "25" "0.000805082128181447" "4" "0.0322397313618357" "Delta-pH pathway" "BioPath" "24" "0" "3" "0" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "24" "3.5366976024506e-19" "6" "6.13692551703363e-07" "unidimensional cell growth" "TAIR-GO" "24" "0.00337397036143238" "3" "0.0786444078473786" "ascorbate glutathione cycle" "AraCyc" "24" "0.00290301126791049" "4" "0.0450591090679507" "atty acid elongation -- unsaturated" "AraCyc" "24" "0.00290301126791049" "5" "0.0274219076705547" "fatty acid elongation -- saturated" "AraCyc" "24" "0.00885764245942319" "5" "0.0350473398305562" "fatty acid elongation -- unsaturated" "AraCyc" "24" "0.00212210481720351" "5" "0.0209796483749333" "transport routes " "FunCat" "24" "6.4252543000205e-05" "5" "0.0101345612677997" "threonine degradation" "AraCyc" "23" "3.62376559602549e-05" "6" "0.0128792699971763" "Translation (chloroplast)" "BioPath" "22" "2.93502994206141e-08" "4" "0.000745807122893821" "indoleacetic acid biosynthesis" "TAIR-GO" "22" "3.02337501179796e-10" "3" "0.00129063210686745" "protein biosynthesis" "TAIR-GO" "22" "0" "4" "0" "protein folding" "TAIR-GO" "22" "0" "3" "0" "glycine degradation I" "AraCyc" "22" "3.27181344436266e-11" "5" "0.000263557036634518" "methionine biosynthesis II" "AraCyc" "22" "0.00119463704725064" "3" "0.0750528301129786" "C-compound and carbohydrate utilization " "FunCat" "22" "0" "4" "0" "channel / pore class transport" "FunCat" "22" "3.84756770373408e-07" "4" "0.0187496440370791" "cysteine biosynthesis II" "AraCyc" "21" "0.00280454044665350" "5" "0.0655189887486922" "MEP (methylerythritol P) pathway, plastids" "LitPath" "21" "2.98777880132687e-05" "3" "0.0168877295837499" "Cytochrome b6/f complex" "BioPath" "20" "5.94592195274912e-05" "2" "0.111460022057281" "brassinosteroid biosynthesis" "TAIR-GO" "20" "0.044382695382105" "2" "0.200201102389976" "chloroplast thylakoid membrane protein import" "TAIR-GO" "20" "7.38751428056737e-10" "2" "0.00802178207931522" "methionine biosynthesis" "TAIR-GO" "20" "3.66053010967188e-10" "2" "0.00802178207931522" "steroid biosynthesis" "TAIR-GO" "20" "0.044382695382105" "2" "0.200201102389976" "glucose and glucose-1-phosphate degradation" "AraCyc" "20" "4.14409246596035e-05" "3" "0.0750528301129786" "methionine and S-adenosylmethionine synthesis" "AraCyc" "20" "1.00345669183115e-08" "2" "0.0314194960526163" "oxidative branch of the pentose phosphate pathway" "AraCyc" "20" "1.59233772871378e-05" "6" "0.000479363602474559" "phospholipid desaturation pathway" "AraCyc" "20" "3.77867507535408e-06" "2" "0.0173533380987713" "sucrose degradation III" "AraCyc" "20" "0.00838186746571877" "3" "0.140630395226872" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "20" "1.11109554043717e-06" "2" "0.0498145167627612" "electron transport and membrane-associated energy conservation " "FunCat" "20" "4.79175088119939e-08" "4" "0.00137783406041810" "lipid transport " "FunCat" "20" "7.76381714410506e-13" "3" "0.00711602110308573" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "20" "1.53472875308487e-05" "2" "0.0795387786398269" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "20" "1.30293223180617e-07" "2" "0.0247739512823251" "Androgen and estrogen metabolism" "KEGG" "20" "3.36294689630766e-07" "2" "0.0396155575721071" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "20" "0.00834077572626439" "4" "0.0208449790689271" "hypersensitive response" "TAIR-GO" "19" "6.21828300193303e-06" "2" "0.0327633992150183" "phenylpropanoid metabolism" "TAIR-GO" "19" "5.37308610602604e-05" "2" "0.0327633992150183" "response to pathogenic bacteria" "TAIR-GO" "19" "3.44817362737933e-08" "2" "0.0181185070379869" "valine degradation II" "AraCyc" "19" "0.00119996743139784" "4" "0.0573149189600929" "Sec (secretory) pathway" "BioPath" "18" "1.22983797505616e-14" "3" "0.000334685665781598" "Thylakoid biogenesis and photosystem assembly" "BioPath" "18" "0.0088249462831849" "2" "0.0570369677806237" "chloroplast organization and biogenesis" "TAIR-GO" "18" "5.7628180904757e-11" "3" "0.00347361486095547" "photosynthesis light harvesting" "TAIR-GO" "18" "0.000138133430517208" "2" "0.0751669320249681" "photosystem II" "TAIR-GO" "18" "2.42510630589743e-08" "2" "0.0181185070379869" "porphyrin biosynthesis" "TAIR-GO" "18" "0.0303242344125952" "3" "0.0786444078473786" "regulation of transcription" "TAIR-GO" "18" "0" "2" "0" "IAA biosynthesis I" "AraCyc" "18" "0.00302584566491223" "2" "0.098362768874738" "Tetracycline biosynthesis" "KEGG" "18" "6.62398048523908e-08" "2" "0.00594524694820763" "serine biosynthesis" "AraCyc" "17" "8.3709327453783e-07" "4" "0.000582963924303839" "detoxification" "FunCat" "17" "0" "4" "0" "transcription" "FunCat" "17" "0.000107764569540305" "3" "0.0596625394356372" "ATP synthase components" "BioPath" "16" "0.0473877454212943" "2" "0.143874925562584" "Early light-inducible proteins" "BioPath" "16" "0.00137545232355668" "2" "0.0570369677806237" "Toc apparatus" "BioPath" "16" "0.0211348737547468" "3" "0.0504254497745238" "cellulose biosynthesis" "TAIR-GO" "16" "0.00233785867087611" "3" "0.0447715442967951" "magnesium chelatase complex" "TAIR-GO" "16" "0" "2" "0" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "chloroplast transport " "FunCat" "16" "0.000455435749201126" "2" "0.0888986164129994" "Transcription (chloroplast)" "BioPath" "14" "0.0479913444809669" "2" "0.0570369677806237" "proteasome regulatory particle, base subcomplex (sensu Eukaryota)" "TAIR-GO" "14" "0.0356845974922292" "2" "0.132401986176465" "transcription initiation" "TAIR-GO" "14" "0.024537482892115" "2" "0.0751669320249681" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "14" "0.00129118213288214" "2" "0.0314194960526163" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "14" "0.0112408307479795" "3" "0.0750528301129786" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "2.26215351171589e-11" "2" "0.00133507160881832" "detoxification by modification" "FunCat" "14" "2.26215351171589e-11" "2" "0.00133507160881832" "nucleotide metabolism" "FunCat" "14" "0" "4" "0" "glutamate degradation I" "AraCyc" "13" "0.00898474309807606" "2" "0.0722660410364327" "methylglyoxal degradation" "AraCyc" "13" "0.0217486614280334" "2" "0.265537016481736" "Other ion-coupled transporters" "KEGG" "13" "0.0322695621967630" "2" "0.160194928543088" "Plastoquinone biosynthesis" "BioPath" "12" "0" "2" "0" "psbP family of thylakoid proteins" "BioPath" "12" "1.91564893510621e-05" "2" "0.0361671157000368" "Tic apparatus" "BioPath" "12" "0.000754527319446955" "3" "0.0149132688615714" "amino acid biosynthesis" "TAIR-GO" "12" "0.000537661735003936" "2" "0.0751669320249681" "branched chain family amino acid biosynthesis" "TAIR-GO" "12" "5.94720349953729e-11" "2" "0.00222134683179681" "primary cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "12" "2.81231235991417e-06" "2" "0.00802178207931522" "response to ethylene stimulus" "TAIR-GO" "12" "0.0186376879218976" "3" "0.0992280081232584" "thiamine biosynthesis" "AraCyc" "12" "0.000183578205142806" "2" "0.0314194960526163" "response to oxidative stress" "TAIR-GO" "11" "8.71087831987954e-05" "2" "0.0181185070379869" "systemic acquired resistance" "TAIR-GO" "11" "0.0140786588187251" "2" "0.0518795857588235" "electron / hydrogen transport " "FunCat" "11" "0.000935341322520752" "2" "0.0206782183482804" "brassinosteroid biosynthesis" "BioPath" "10" "0.00490391409857858" "1" "0.050181811225557" "Other cell wall metabolism related enzymes" "BioPath" "10" "7.10584183952618e-05" "1" "0.0183828863350465" "Oxygen-evolving enhancer protein" "BioPath" "10" "0.0139247156249216" "1" "0.139000688521700" "photosystem I subunit precursor" "BioPath" "10" "0.00128534685096788" "1" "0.139000688521700" "Plastocyanin" "BioPath" "10" "7.10584183952618e-05" "1" "0.0183828863350465" "Regulatory enzymes" "BioPath" "10" "0.00490391409857858" "1" "0.050181811225557" "Transcriptional regulators (chloroplast)" "BioPath" "10" "7.10584183952618e-05" "1" "0.0183828863350465" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "0.0209315335147753" "1" "0.130568306577703" "biotin binding" "TAIR-GO" "10" "1.38646667131657e-05" "1" "0.0170825926947198" "cell communication" "TAIR-GO" "10" "0" "1" "0" "cell death" "TAIR-GO" "10" "0.0145578392878538" "1" "0.0855883867618163" "chlorophyll catabolism" "TAIR-GO" "10" "0.00123404405512875" "1" "0.0468050844205658" "chloroplast ATP synthase complex" "TAIR-GO" "10" "1.38646667131657e-05" "1" "0.0170825926947198" "cysteine biosynthesis" "TAIR-GO" "10" "0.00123404405512875" "1" "0.0468050844205658" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "10" "0.0145578392878538" "1" "0.130568306577703" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "glycine catabolism" "TAIR-GO" "10" "0" "1" "0" "glyoxysome organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "methionine biosynthesis from L-homoserine via cystathione" "TAIR-GO" "10" "0" "1" "0" "methylation-dependent chromatin silencing" "TAIR-GO" "10" "0" "1" "0" "photoinhibition" "TAIR-GO" "10" "0.000433703854146343" "1" "0.0468050844205658" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "10" "0.00168189276020767" "1" "0.0855883867618163" "plastid organization and biogenesis" "TAIR-GO" "10" "0.000292498454871417" "1" "0.0855883867618163" "plastoquinone biosynthesis" "TAIR-GO" "10" "1.38646667131657e-05" "1" "0.0170825926947198" "positive regulation of transcription" "TAIR-GO" "10" "0.00088901050184118" "1" "0.0468050844205658" "posttranscriptional gene silencing" "TAIR-GO" "10" "0" "1" "0" "protein binding" "TAIR-GO" "10" "0.00297397968904137" "1" "0.130568306577703" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "proton transport" "TAIR-GO" "10" "0.0209315335147753" "1" "0.130568306577703" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to salicylic acid stimulus" "TAIR-GO" "10" "0" "1" "0" "response to toxin" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "vitamin E biosynthesis" "TAIR-GO" "10" "0.0145578392878538" "1" "0.0855883867618163" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "xenobiotic catabolism" "TAIR-GO" "10" "0" "1" "0" "glycosylglyceride desaturation pathway" "AraCyc" "10" "0.0168528028737438" "1" "0.0830906481611936" "peptidoglycan biosynthesis" "AraCyc" "10" "0.0109260650117129" "1" "0.275382174699805" "plastoquinone biosynthesis" "AraCyc" "10" "0.00153287172540498" "1" "0.0830906481611936" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "10" "0.000317716930473735" "1" "0.126915521536142" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "xanthophyll cycle" "AraCyc" "10" "9.7073983654741e-06" "1" "0.0165420999775660" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "10" "8.39561087474927e-06" "1" "0.0337983917811374" "glyoxylate cycle" "FunCat" "10" "8.39561087474927e-06" "1" "0.0337983917811374" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "protein targeting, sorting and translocation" "FunCat" "10" "0.032841850700613" "2" "0.0675806946564973" "C5-Branched dibasic acid metabolism" "KEGG" "10" "0" "1" "0" "chlorophyll catabolism" "LitPath" "10" "0.00107897096884921" "1" "0.0417651032659502" "diterpene biosynthesis" "LitPath" "10" "1.17778976666470e-05" "1" "0.0151446035945625" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "acetate metabolism" "TAIR-GO" "9" "0" "1" "0" "flower development" "TAIR-GO" "9" "0.0495715939747928" "1" "0.130568306577703" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "glyoxylate cycle" "TAIR-GO" "9" "0" "1" "0" "L-serine biosynthesis" "TAIR-GO" "9" "7.32018716779591e-06" "1" "0.0170825926947198" "methylglyoxal catabolism" "TAIR-GO" "9" "3.08772518824746e-05" "1" "0.0170825926947198" "nitrogen compound metabolism" "TAIR-GO" "9" "0.000937559846780053" "1" "0.0468050844205658" "nuclear ubiquitin ligase complex" "TAIR-GO" "9" "0" "1" "0" "phosphate transport" "TAIR-GO" "9" "0.00134072321672295" "1" "0.0855883867618163" "pollen germination" "TAIR-GO" "9" "0.00187426401823860" "1" "0.0468050844205658" "pollen tube growth" "TAIR-GO" "9" "0.000423990729440667" "1" "0.0855883867618163" "putrescine biosynthesis" "TAIR-GO" "9" "7.32018716779591e-06" "1" "0.0170825926947198" "seed germination" "TAIR-GO" "9" "1.99510340887338e-09" "1" "0" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "sphingosine biosynthesis" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "0.000142426816945221" "1" "0.0453819726019468" "oxidation of fatty acids " "FunCat" "9" "1.16141323743494e-08" "1" "0.0121561783329247" "Glycosphingolipid metabolism" "KEGG" "9" "0.0219729764323785" "1" "0.241436254562352" "Taurine and hypotaurine metabolism" "KEGG" "9" "0.0115453069137952" "1" "0.108930513862023" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "chloroplast stroma protein import" "TAIR-GO" "8" "2.21445038653334e-06" "2" "0.00222134683179681" "fatty acid desaturation" "TAIR-GO" "8" "0.00392902776506447" "1" "0.0468050844205658" "Golgi organization and biogenesis" "TAIR-GO" "8" "0" "2" "0" "hydrogen peroxide catabolism" "TAIR-GO" "8" "0" "2" "0" "nonphotochemical quenching" "TAIR-GO" "8" "0.000226934730039599" "1" "0.0170825926947198" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "photosystem II antenna complex" "TAIR-GO" "8" "0.000607815807550592" "1" "0.0468050844205658" "response to high light intensity" "TAIR-GO" "8" "0.00529930664359824" "1" "0.0468050844205658" "proline biosynthesis I" "AraCyc" "8" "0.0277108791234956" "2" "0.0722660410364327" "accessory proteins of photosynthetic electron transport " "FunCat" "8" "1.42460234145638e-06" "1" "0.0121561783329247" "DNA-directed RNA polymerase II, holoenzyme" "TAIR-GO" "7" "0" "1" "0" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "response to water deprivation" "TAIR-GO" "7" "0" "2" "0" "systemic acquired resistance, salicylic acid mediated signaling pathway" "TAIR-GO" "7" "0.000856308403943037" "1" "0.0468050844205658" "rRNA synthesis " "FunCat" "7" "5.14756806066591e-05" "1" "0.0121561783329247"