"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN ALL DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"carotenoid biosynthesis"	"AraCyc"	94	11		
"Glutathione metabolism"	"KEGG"	93	15		
"carotenoid biosynthesis"	"TAIR-GO"	58	7		
"ORGAN DATA SET"	"quantDE"	4.56147	"maxDE"	5.4948839	"ORGAN DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	54	2.11808417071511E-020	6	0.000520332733622946
"Carotenoid and abscisic acid metabolism"	"LitPath"	50	1.88210271527044E-041	6	0.000000235902359901165
"Carotenoid biosynthesis"	"BioPath"	44	3.39023927364961E-052	5	0.00000000965741961764702
"carotenoid biosynthesis"	"AraCyc"	44	2.61615555397056E-058	5	0.00000000266996273468399
"carotenid biosynthesis"	"LitPath"	44	4.60842914928633E-045	5	0.0000000596400652199745
"C-compound and carbohydrate metabolism"	"FunCat"	34	0.00000739605377295453	10	0.000773874170864146
"Biosynthesis of steroids"	"KEGG"	34	1.25137700899632E-024	5	0.00000169560723807351
"biogenesis of chloroplast"	"FunCat"	22	0.000000000783996837000372	3	0.010057099503671
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	20	3.52563840433923E-016	2	0.00131794822551132
"Folding, Sorting and Degradation"	"KEGG"	20	0.000000108330857294151	2	0.0606858176149368
"Protein export"	"KEGG"	20	3.91325686473773E-019	2	0.00174553959888142
"carotene biosynthesis"	"TAIR-GO"	18	3.74370561542665E-027	2	0.0000067017916975559
"xanthophyll cycle"	"AraCyc"	18	0	2	0
"photorespiration"	"AraCyc"	17	0.000000000000592345946099747	4	0.000175601312502441
"Biosynthesis of prenyl diphosphates"	"BioPath"	14	0.00184131370960693	2	0.041617487730482
"response to water deprivation"	"TAIR-GO"	14	0	2	0
"Carbon fixation"	"KEGG"	14	0.00000390390495747072	3	0.00201373120002979
"polyprenyl diphosphate biosynthesis"	"LitPath"	14	0.0000000000001045047878134	2	0.000808903008879163
"glycine biosynthesis I"	"AraCyc"	13	0.0000000337205030620119	3	0.00463726704338242
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	13	0.00000000000767125790961685	3	0.000353610333699431
"jasmonic acid biosynthesis"	"TAIR-GO"	12	0.00000142994266568743	2	0.0052382893774002
"response to ethylene stimulus"	"TAIR-GO"	12	0.00000000000747491301976307	3	0.000104174386653014
"Calvin cycle"	"AraCyc"	12	0.00000243863987968365	2	0.0222325428972431
"jasmonic acid biosynthesis"	"AraCyc"	12	0.0000000322610309711881	2	0.00269906519453213
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	12	0.000000000791371309218894	2	0.00106216409182951
"glycolysis and gluconeogenesis"	"FunCat"	12	0.0420238074981459	3	0.0810102526735325
"photosynthesis"	"FunCat"	12	0.0000348276687784323	3	0.00311341650584345
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	12	0.000000010376860058956	3	0.000075956658065362
"Pentose phosphate pathway"	"KEGG"	12	0.000000138209221039497	2	0.0047519679771623
"Delta-pH pathway"	"BioPath"	10	0.00000000000027405813287547	1	0.000912113984265258
"Glucosyltransferases for benzoic acids"	"BioPath"	10	0.0000504423879252896	1	0.0211785001437664
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	10	0.0000000093511264732793	1	0.00440777864354073
"aromatic amino acid family biosynthesis"	"TAIR-GO"	10	0.00000602165902965788	1	0.028684955499009
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	10	0.000000814317350742905	1	0.0213165658661275
"cell plate formation (sensu Magnoliophyta)"	"TAIR-GO"	10	0.0000000000000103357518981839	1	0.000365061486636309
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	10	0.0000000000398183952646154	1	0.00213711361079263
"photosystem I"	"TAIR-GO"	10	0.000000000878813423282269	1	0.00720955840938746
"photosystem II"	"TAIR-GO"	10	0.0000000000284426927167979	1	0.00351836584697992
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	10	0.00000000000435071984193645	1	0.00213711361079263
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	10	0	1	0
"xanthophyll cycle"	"TAIR-GO"	10	0	1	0
"xanthophyll metabolism"	"TAIR-GO"	10	0	1	0
"Fructose and mannose metabolism"	"KEGG"	10	0.0000748931042209653	2	0.00657494431929279
"Glutathione metabolism"	"KEGG"	10	0.0000362419029749131	1	0.0485940925837844
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	10	0.000115651773837934	1	0.0506992510830164
"chorismate biosynthesis"	"LitPath"	10	0.000139760661762374	1	0.0500418275280572
"photorespiration"	"TAIR-GO"	9	0.000000000354731369658148	1	0.00351836584697992
"Glycine, serine and threonine metabolism"	"KEGG"	9	0.0000376740582167489	1	0.0366898100712913
"sterol biosynthesis"	"BioPath"	8	0.0211524193974553	2	0.0101947753910087
"abscisic acid biosynthesis"	"TAIR-GO"	8	0.00000610980791897688	1	0.0148926747268858
"ATP-dependent proteolysis"	"TAIR-GO"	8	0.000000288471896917216	2	0.00099291618734999
"carotenoid biosynthesis"	"TAIR-GO"	8	0.00000424325131567327	1	0.0094957922883949
"response to osmotic stress"	"TAIR-GO"	8	0.000000000530506093611944	1	0.00213711361079263
"sterol biosynthesis"	"TAIR-GO"	8	0.00309812672062988	2	0.0060808579789316
"sugar mediated signaling"	"TAIR-GO"	8	0.000000486105566431433	1	0.00521318632575415
"xanthophyll biosynthesis "	"TAIR-GO"	8	0	1	0
"gluconeogenesis"	"AraCyc"	8	0.0066755983988086	2	0.0345630259350108
"sterol biosynthesis"	"AraCyc"	8	0.000488997700293092	2	0.00368556226308184
"threonine degradation"	"AraCyc"	8	0.000000780642212356614	3	0.000292822319435543
"biosynthesis of vitamins, cofactors, and prosthetic groups"	"FunCat"	8	0.000000633151136944102	1	0.0159246596076505
"secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	8	0	1	0
"Methane metabolism"	"KEGG"	8	0.00033968613863452	2	0.0302412382928421
"Terpenoid biosynthesis"	"KEGG"	8	0.0000164740079210136	2	0.000766024096873278
"protein modification "	"FunCat"	7	0.000000878725346685982	2	0.00129443090836431
"STRESS DATA SET"	"quantDE"	2.021471	"maxDE"	10.04475	"STRESS DATA SET"
"Carotenoid biosynthesis"	"BioPath"	8	8.55778185876443E-015	1	0.0000934526976988712
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	8	0.0000002730613313111	1	0.00557440519680731
"abscisic acid biosynthesis"	"TAIR-GO"	8	0.00000000000190334457503372	1	0.000484092348348367
"response to osmotic stress"	"TAIR-GO"	8	8.94397746078732E-017	1	0.000065208381011973
"response to water deprivation"	"TAIR-GO"	8	0	1	0
"sugar mediated signaling"	"TAIR-GO"	8	0.000000000000118516181470513	1	0.000162466979017529
"xanthophyll biosynthesis "	"TAIR-GO"	8	0	1	0
"carotenoid biosynthesis"	"AraCyc"	8	6.30530016735965E-015	1	0.00005623547541826
"xanthophyll cycle"	"AraCyc"	8	3.77261208983862E-022	1	0.00000125470073630858
"carotenid biosynthesis"	"LitPath"	8	0.00000000234128197833115	1	0.00232645655268038
"Carotenoid and abscisic acid metabolism"	"LitPath"	8	0.000000184887896581066	1	0.0086213249296883
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	8	0.000389842808139237	2	0.00796160520996676
"HORMONE DATA SET"	"quantDE"	1.75202	"maxDE"	3.5251921	"HORMONE DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	53	0.0000000000123352957558923	7	0.0107138474520672
"Glutathione metabolism"	"KEGG"	32	2.7361116698629E-023	6	0.00000202402610126363
"Glucosyltransferases for benzoic acids"	"BioPath"	30	1.01278373709706E-024	3	0.0000599862038176216
"Glutathione metabolism"	"BioPath"	24	0.00000131051967169463	3	0.0345649804766046
"toxin catabolism"	"TAIR-GO"	24	2.20636301193574E-023	8	0.00000000177836171088378
"C-compound and carbohydrate metabolism"	"FunCat"	22	0.00350877759206833	6	0.0150940347268
"IAA biosynthesis"	"AraCyc"	18	1.12965657161022E-017	2	0.000709955288387767
"Tryptophan metabolism"	"KEGG"	17	0.00000000000430550026638887	3	0.00147472895911308
"additional photosystem II components"	"BioPath"	16	0.0000517253491613195	2	0.0322412827069744
"Early light-inducible proteins"	"BioPath"	16	5.66987393975919E-017	2	0.000185216534954959
"alanine biosynthesis II"	"AraCyc"	14	0.0000000000233611075436764	3	0.000522248694434985
"lignin biosynthesis"	"AraCyc"	14	0.00000115083941091866	3	0.00449657131571778
"phenylalanine biosynthesis II"	"AraCyc"	14	0.00000000000149775104837347	3	0.000312722047520141
"phenylalanine degradation I"	"AraCyc"	14	0.00000000037856799099807	3	0.000707892218596545
"tyrosine degradation"	"AraCyc"	14	3.01486137271023E-017	3	0.0000103260326958606
"stress response"	"FunCat"	14	0	2	0
"transport "	"FunCat"	14	4.61467485593007E-028	2	0.00000098459770387925
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	14	0.00000746794520655677	3	0.00355244291907753
"Phenylpropanoid pathway"	"LitPath"	14	0.0000361038203047676	3	0.0206512033451345
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	12	0.0158074042828121	2	0.0758201590748313
"Phenylalanine metabolism"	"KEGG"	12	0.000252968342084875	2	0.138892610665403
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	12	0.00120756879442362	2	0.182137786888898
"Tyrosine metabolism"	"KEGG"	12	0.0000146945552090398	2	0.0209936692463578
"ascorbate glutathione cycle"	"AraCyc"	11	0.00000000433161503152697	2	0.00172877142649776
"nitrogen and sulfur utilization "	"FunCat"	11	0.0000000000330213936164084	2	0.000153603541065325
"Cyanoamino acid metabolism"	"KEGG"	11	0.0000000641550098614206	2	0.00572014748933442
"Chloroplastic protein turnover"	"BioPath"	10	0.0000000279301765346387	1	0.0188635032460352
"core phenylpropanoid metabolism"	"BioPath"	10	0.0317115586059144	1	0.19514968919407
"FtsH protease (many homologues / subcellular localization ambiguous)"	"BioPath"	10	0	1	0
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	10	0.000000108174384020218	1	0.0063585777460212
"Tocopherol biosynthesis"	"BioPath"	10	0.0000000036458322385647	1	0.00309890734830985
"aromatic amino acid family biosynthesis"	"TAIR-GO"	10	0.0000000570422673656503	1	0.013924985641417
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	10	0.00000000679196775002215	1	0.0102651087482055
"carotenoid biosynthesis"	"TAIR-GO"	10	0.000000000311525929786293	1	0.0044992390949473
"cell plate formation (sensu Magnoliophyta)"	"TAIR-GO"	10	5.50379218361965E-017	1	0.000168769535073685
"cytochrome b6f complex"	"TAIR-GO"	10	0.00000000000112676677068269	1	0.00245000674853344
"cytochrome b6f complex assembly"	"TAIR-GO"	10	0	1	0
"lignin biosynthesis"	"TAIR-GO"	10	0.00000000415597576965485	1	0.00573772331465841
"plastoquinone biosynthesis"	"TAIR-GO"	10	5.50379218361965E-017	1	0.000168769535073685
"vitamin E biosynthesis"	"TAIR-GO"	10	0.00000000000062077012708071	1	0.000996165829667815
"plastoquinone biosynthesis"	"AraCyc"	10	0.0000000000000291325312069855	1	0.00139520581523329
"tyrosine biosynthesis I"	"AraCyc"	10	0.0000000000392612626796821	1	0.0079618029744235
"vitamin E biosynthesis"	"AraCyc"	10	0.000000000218121895942031	1	0.00473832736407191
"C-compound and carbohydrate utilization "	"FunCat"	10	2.75777625625035E-020	1	0.000102201241662666
"electron transport and membrane-associated energy conservation "	"FunCat"	10	0.000000000000766457398538903	1	0.00351725811648934
"energy"	"FunCat"	10	2.32912656898623E-018	1	0.000304634529580239
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	10	0.0000198560740907162	1	0.076843056761444
"chorismate biosynthesis"	"LitPath"	10	0.00000000750148620908209	1	0.0161787003604264
"Shikimate pathway"	"LitPath"	10	0.000239526717373207	1	0.112867932784832
"auxin biosynthesis"	"TAIR-GO"	9	0.00000000000081141996080841	1	0.000996165829667815
"ethylene biosynthesis"	"TAIR-GO"	9	0.000000000616219676145919	1	0.0044992390949473
"acrylonitrile degradation"	"AraCyc"	9	9.76392796556474E-016	1	0.00139520581523329
"aldoxime degradation"	"AraCyc"	9	9.76392796556474E-016	1	0.00139520581523329
"IAA biosynthesis I"	"AraCyc"	9	0.0000000144432771410217	1	0.0079618029744235
"Benzoate degradation via CoA ligation"	"KEGG"	9	0.0265316173875993	1	0.384481027793571
"Nitrogen metabolism"	"KEGG"	9	0.00281608100512354	1	0.0814022669188766
"Chloroplastic protein import via envelope membrane"	"BioPath"	8	0.000141318882686791	2	0.00440026868795999
"Tic apparatus"	"BioPath"	8	0.00000000951187185620502	2	0.000292579338625676
"response to ethylene stimulus"	"TAIR-GO"	8	0.00000000723314385604997	2	0.000682242679989752
"photosynthesis"	"FunCat"	8	0.00145655648828497	1	0.0740032534432479
"Butanoate metabolism"	"KEGG"	8	0.000191562302856966	2	0.00572014748933442
"Glutamate metabolism"	"KEGG"	8	0.0184895566330386	1	0.133821695706248
"Glycerolipid metabolism"	"KEGG"	8	0.00294411493247532	2	0.0124745867301619
"Propanoate metabolism"	"KEGG"	8	0.000401838620452553	2	0.0095797855884402
"Valine, leucine and isoleucine degradation"	"KEGG"	8	0.00133782784467247	2	0.0146540029156507
"polyprenyl diphosphate biosynthesis"	"LitPath"	8	0.000000000294146149457809	2	0.000124417051861425
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	8	0.0403191324031479	2	0.066525883798806
"MUTANT DATA SET"	"quantDE"	1.52173	"maxDE"	5.763131887	"MUTANT DATA SET"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	71	0.000000000235013593531243	10	0.00111338185388858
"Pyruvate metabolism"	"KEGG"	64	0.000000000304886704927023	9	0.00581171993219431
"Intermediary Carbon Metabolism"	"BioPath"	54	0.0184690752284021	7	0.426659292131761
"Oxidative phosphorylation"	"KEGG"	52	0.0000000000200541113753051	13	0.0000341638876392596
"transport "	"FunCat"	48	0	11	0
"Glycerolipid metabolism"	"KEGG"	45	0.00000000000294471252439285	6	0.00181776348238692
"Glycolysis / Gluconeogenesis"	"KEGG"	41	0.00750714618401302	5	0.253873542668707
"tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)"	"FunCat"	40	0.0106910438968283	5	0.382312675297117
"photorespiration"	"AraCyc"	38	3.31209263895682E-019	6	0.000733959826323282
"Glycan Biosynthesis and Metabolism"	"KEGG"	33	0.00434079171304271	6	0.0579308107051778
"ascorbic acid biosynthesis"	"BioPath"	32	3.45061130887436E-015	4	0.00205579620800673
"Ascorbate and aldarate metabolism"	"KEGG"	32	0.0000000431156509548418	4	0.0107116818657499
"Bile acid biosynthesis"	"KEGG"	31	0.0000000000000306396417147956	4	0.00132508599570611
"Fatty acid metabolism"	"KEGG"	31	0.000403331489662636	4	0.0374878753184756
"Glutathione metabolism"	"BioPath"	30	0.0191587352571465	5	0.0920411581778625
"ATP-dependent proteolysis"	"TAIR-GO"	30	3.68409087399903E-026	6	0.000000506208604566917
"transport facilitation"	"FunCat"	30	0	6	0
"Carotenoid and abscisic acid metabolism"	"LitPath"	30	0.000000000449983081691512	4	0.00691304505070157
"energy"	"FunCat"	28	0	6	0
"plant / fungal specific systemic sensing and response "	"FunCat"	28	0.00000000000958437588735917	3	0.0124278425903934
"plant hormonal regulation"	"FunCat"	28	0.00000000000958437588735917	3	0.0124278425903934
"Glutathione metabolism"	"KEGG"	28	0.0027832825456236	4	0.0804970769230442
"Valine, leucine and isoleucine degradation"	"KEGG"	28	0.0000454975985367108	4	0.0418352498970863
"isoleucine degradation I"	"AraCyc"	27	0.0000000010162460656352	4	0.0040879154483183
"isoleucine degradation III"	"AraCyc"	27	4.05648610085223E-018	4	0.000119685191193186
"leucine degradation I"	"AraCyc"	27	0.0000000010162460656352	4	0.0040879154483183
"leucine degradation II"	"AraCyc"	27	4.05648610085223E-018	4	0.000119685191193186
"Chloroplastic protein turnover"	"BioPath"	26	1.06186814159355E-019	5	0.00000588740839911871
"Biosynthesis of prenyl diphosphates"	"BioPath"	25	0.0126203963306844	4	0.0476346161065682
"growth"	"TAIR-GO"	25	0.0000115911494647388	3	0.046543743225354
"Tryptophan metabolism"	"KEGG"	25	0.0000176531411344039	4	0.0374878753184756
"Carotenoid biosynthesis"	"BioPath"	24	0.00000000000368132655535772	3	0.00106073960881717
"photorespiration"	"TAIR-GO"	24	3.3745224551747E-024	3	0.000051663126451993
"carotenoid biosynthesis"	"AraCyc"	24	0.0000000000141446239015335	3	0.000736584014788954
"transported compounds (substrates)"	"FunCat"	24	0	4	0
"carotenid biosynthesis"	"LitPath"	24	0.0000000000455798444406611	3	0.00304988491179308
"response to UV"	"TAIR-GO"	23	0.00000000734049604496726	3	0.00512865826329515
"ascorbate glutathione cycle"	"AraCyc"	22	0.00000000113193749510641	3	0.00513377346283961
"glycine biosynthesis I"	"AraCyc"	22	0.00000398065985114204	4	0.0458468693245565
"serine-isocitrate lyase pathway"	"AraCyc"	22	0.00439665295546033	3	0.151196052275273
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	22	0.0000000000146247248075724	4	0.00272974420851904
"Butanoate metabolism"	"KEGG"	22	0.000154215861268431	3	0.0465807803497737
"response to light"	"TAIR-GO"	21	0.00111756857695229	3	0.16392366899017
"threonine degradation"	"AraCyc"	21	0.00000000000710303549282775	5	0.000268208839611419
"Glycine, serine and threonine metabolism"	"KEGG"	21	0.0218015946286089	3	0.136247003304384
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	20	0.000562183300826025	2	0.154469021976697
"TCA cycle variation VIII"	"AraCyc"	20	0.0252960751502912	3	0.187571800046082
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	20	0.000000201106057624529	2	0.0347615008518484
"Benzoate degradation via hydroxylation"	"KEGG"	20	0.0000000349055643945139	2	0.0151196566040156
"Diterpenoid biosynthesis"	"KEGG"	20	0.0000761476373140732	2	0.0255344478633194
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	20	0.00000262339814480269	2	0.0491424997717918
"Gibberellin metabolism"	"LitPath"	20	0.0000227262132999158	2	0.08158293193272
"fatty acid beta oxidation complex"	"BioPath"	19	0.00000217117769776665	2	0.0758345809039668
"response to pathogenic bacteria"	"TAIR-GO"	19	7.96989841169151E-015	2	0.00175167827715322
"fatty acid oxidation pathway"	"AraCyc"	19	0.0000511572877084832	2	0.0541605754124099
"detoxification"	"FunCat"	19	0	4	0
"transcription"	"FunCat"	19	0.00000000000383903084112549	4	0.000384951240778733
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	19	0.00022515713329844	2	0.150258200797689
"electron transport"	"TAIR-GO"	18	0.000321511157176685	3	0.0253594877044738
"indoleacetic acid biosynthesis"	"TAIR-GO"	18	0.000000000000382483239231447	2	0.00175167827715322
"aerobic respiration -- electron donors reaction list"	"AraCyc"	18	0.000000222270537986664	5	0.000354814675354529
"IAA biosynthesis"	"AraCyc"	18	0.000000552771063233042	2	0.0155633829708543
"IAA biosynthesis I"	"AraCyc"	18	0.00000000135957026568866	2	0.00658187071000514
"leucine biosynthesis"	"AraCyc"	18	0.00000000135839041061834	3	0.00513377346283961
"Protein folding and associated processing"	"KEGG"	18	0.00102331398935963	2	0.172317346478773
"methylglyoxal degradation"	"AraCyc"	17	0.000000000177174211309453	3	0.00303563495357039
"valine degradation I"	"AraCyc"	17	0.00031345848907777	3	0.0689067497360199
"valine degradation II"	"AraCyc"	17	0.00000000953598754905324	3	0.00647521095985595
"degradation "	"FunCat"	17	0.00005743998606865	3	0.0366868050618956
"protein degradation "	"FunCat"	17	0.000000345886097562436	3	0.0124278425903934
"N-Glycan biosynthesis"	"KEGG"	17	0.00000992096082800805	3	0.0152411536652395
"Chloroplastic protein import via envelope membrane"	"BioPath"	16	0.00000535138761372574	4	0.0012643285505351
"ClpP protease complex "	"BioPath"	16	0.000000000000254316337579449	4	0.0000198230651293319
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	16	0.0171610392716614	2	0.154469021976697
"acetyl-CoA assimilation"	"AraCyc"	16	0.0157680793193091	2	0.181038337434893
"glyoxylate cycle"	"AraCyc"	16	0.00198389763186882	2	0.086681616494442
"stress response"	"FunCat"	16	0	2	0
"Histidine metabolism"	"KEGG"	16	0.000114292163798485	3	0.0184850367835151
"response to oxidative stress"	"TAIR-GO"	15	0.000000000000116014169749363	3	0.000051663126451993
"response to water deprivation"	"TAIR-GO"	15	0	3	0
"toxin catabolism"	"TAIR-GO"	15	0.0054836568322426	4	0.116084495902862
"Delta-pH pathway"	"BioPath"	14	0.000000000000025557071176205	2	0.0000927437081825245
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	14	0.000138084451737301	2	0.0189439501369532
"proteasome regulatory particle, base subcomplex (sensu Eukaryota)"	"TAIR-GO"	14	0.00000680578395410432	2	0.0169587800133691
"electron transport and membrane-associated energy conservation "	"FunCat"	14	0.0000000109263411245676	4	0.0000296650757434168
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	14	0.00000477489915649619	2	0.011029289844549
"Fatty acid biosynthesis (path 2)"	"KEGG"	14	0.0000119771137142946	2	0.0151196566040156
"polyprenyl diphosphate biosynthesis"	"LitPath"	14	0.000000000898731660237188	2	0.00992918204499985
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	13	0.000000829407277931132	2	0.0195578634719991
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	13	0.000000829407277931132	2	0.0195578634719991
"mRNA synthesis "	"FunCat"	13	0.00551251619825812	3	0.0414643152156682
"RNA synthesis "	"FunCat"	13	0.00551251619825812	3	0.0414643152156682
"Tic apparatus"	"BioPath"	12	0.00000000173453432349102	3	0.000250485814080878
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	12	0.0000000014121531721335	3	0.000329953103409073
"4-hydroxyproline degradation"	"AraCyc"	12	0.0000095270420185572	2	0.0120760963754469
"arginine degradation IX"	"AraCyc"	12	0.0000095270420185572	2	0.0155633829708543
"formylTHF biosynthesis"	"AraCyc"	12	0.000778505280097831	2	0.0471581728769352
"phenylalanine degradation I"	"AraCyc"	12	0.0376687058538269	2	0.125546042490741
"proline degradation I"	"AraCyc"	12	0.00711594039464689	2	0.0779084527980377
"proline degradation II"	"AraCyc"	12	0.00000625302824053906	2	0.0120760963754469
"1,2-Dichloroethane degradation"	"KEGG"	12	0.00000000000581117583496158	2	0.000646600218960553
"Limonene and pinene degradation"	"KEGG"	12	0.00000000113541161719741	2	0.00297393208901683
"Lysine degradation"	"KEGG"	12	0.00745843936227188	2	0.119466392459845
"Pentose and glucuronate interconversions"	"KEGG"	12	0.00449165815824026	2	0.0467340753564082
"Phytic acid biosynthesis"	"BioPath"	11	0.0157668232779087	2	0.0844176097886917
"alanine biosynthesis II"	"AraCyc"	11	0.0209100830491291	2	0.105400325803475
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	11	0.000387843176437751	2	0.0142555766629054
"brassinosteroid biosynthesis"	"BioPath"	10	0.00000011172462315583	1	0.00601041577734141
"Cytochrome b6/f complex"	"BioPath"	10	0.0000771722032488359	1	0.060242805361739
"ERD1 protease (ClpC-like)"	"BioPath"	10	0	1	0
"Regulatory enzymes"	"BioPath"	10	0.00000011172462315583	1	0.00601041577734141
"brassinosteroid biosynthesis"	"TAIR-GO"	10	0.0455541487899895	1	0.150988774883053
"cell death"	"TAIR-GO"	10	0.0000124070797013499	1	0.0185727210450737
"cell plate formation (sensu Magnoliophyta)"	"TAIR-GO"	10	0.00000000265621412312421	1	0.00334475253972186
"chlorophyll catabolism"	"TAIR-GO"	10	0.000000502727792501161	1	0.0096521951159031
"defense response to pathogenic bacteria, incompatible interaction"	"TAIR-GO"	10	0.0000124070797013499	1	0.0297867495570207
"fatty acid beta-oxidation"	"TAIR-GO"	10	0.000398086388704676	1	0.0430024649764884
"flavonoid biosynthesis"	"TAIR-GO"	10	0.000398086388704676	1	0.0579537137954468
"gibberellic acid biosynthesis"	"TAIR-GO"	10	0.0316742222317342	1	0.130583419402976
"gibberellic acid mediated signaling"	"TAIR-GO"	10	0.000117183608446988	1	0.0297867495570207
"glutathione metabolism"	"TAIR-GO"	10	0	1	0
"glycine catabolism"	"TAIR-GO"	10	0	1	0
"glyoxysome organization and biogenesis"	"TAIR-GO"	10	0	1	0
"hypersensitive response"	"TAIR-GO"	10	0.000170251025423859	1	0.0430024649764884
"methionine biosynthesis"	"TAIR-GO"	10	0.0000039996077135712	1	0.0185727210450737
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	10	0	1	0
"pectin biosynthesis"	"TAIR-GO"	10	0.000000000230328068249552	1	0.0096521951159031
"response to salicylic acid stimulus"	"TAIR-GO"	10	0	1	0
"steroid biosynthesis"	"TAIR-GO"	10	0.0455541487899895	1	0.150988774883053
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	10	0	1	0
"unidimensional cell growth"	"TAIR-GO"	10	0.0455541487899895	1	0.171971272657357
"ascorbate biosynthesis"	"AraCyc"	10	0.0000182107833663124	1	0.0614192856089249
"brassinosteroid biosynthesis I"	"AraCyc"	10	0.025354223967946	1	0.234556682333972
"brassinosteroid biosynthesis II"	"AraCyc"	10	0.000193501200011388	1	0.102937157009632
"gibberellin biosynthesis"	"AraCyc"	10	0.0065560832102988	1	0.102937157009632
"homocysteine and cysteine interconversion"	"AraCyc"	10	0.00031298286637565	1	0.0745023586163103
"methionine biosynthesis II"	"AraCyc"	10	0.00412164886106202	1	0.118097028561928
"phospholipid desaturation pathway"	"AraCyc"	10	0.0000655894872428677	1	0.0192622699725867
"TCA cycle variation II"	"AraCyc"	10	0.00599629918889466	2	0.040636870216943
"C-compound and carbohydrate glyoxylate cycle "	"FunCat"	10	0.00000000132578174182458	1	0.00704547665829906
"detoxification by modification"	"FunCat"	10	0.000000000278020840463619	1	0.00704547665829906
"glyoxylate cycle"	"FunCat"	10	0.00000000132578174182458	1	0.00704547665829906
"ionic homeostasis "	"FunCat"	10	0	1	0
"lipid transport "	"FunCat"	10	0.000000259924737077536	1	0.055845465673839
"nucleotide metabolism"	"FunCat"	10	0	2	0
"phospholipid biosynthesis "	"FunCat"	10	0.000000554930659513322	1	0.013634235909903
"transport routes "	"FunCat"	10	0.00774997157467102	2	0.0559800688107214
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	10	0.000172919923739927	1	0.0396359893385485
"Androgen and estrogen metabolism"	"KEGG"	10	0.000264231693665536	1	0.0534934358296758
"Flavonoid biosynthesis"	"KEGG"	10	0.0499708464431149	1	0.221607377920787
"chlorophyll biosynthesis"	"LitPath"	10	0.0131699072378787	1	0.10200413035964
"chlorophyll catabolism"	"LitPath"	10	0.000000418163504057816	1	0.0107795909143159
"diterpene biosynthesis"	"LitPath"	10	0.00000000216995756800699	1	0.0037405346227534
"flavonoid, anthocyanin, and proanthocyanidin biosynthesis"	"LitPath"	10	0.0166292994312659	1	0.14418061961696
"giberelin biosynthesis"	"LitPath"	10	0.0192871704324215	1	0.189317664471177
"proanthocyanidin biosynthesis"	"LitPath"	10	0.0166292994312659	1	0.14418061961696
"acetate metabolism"	"TAIR-GO"	9	0	1	0
"flower development"	"TAIR-GO"	9	0.000117946506199524	1	0.0297867495570207
"glyoxylate cycle"	"TAIR-GO"	9	0	1	0
"methylglyoxal catabolism"	"TAIR-GO"	9	0.000000012675097657266	1	0.00334475253972186
"photosystem I"	"TAIR-GO"	9	0.000381211393745057	1	0.0579537137954468
"photosystem II"	"TAIR-GO"	9	0.0000280514058355731	1	0.0297867495570207
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	9	0.00000639389645804617	1	0.0185727210450737
"pollen germination"	"TAIR-GO"	9	0.00000150677813157588	1	0.0096521951159031
"pollen tube growth"	"TAIR-GO"	9	0.000000253264305734428	1	0.0185727210450737
"proteolysis and peptidolysis"	"TAIR-GO"	9	0	1	0
"response to light intensity"	"TAIR-GO"	9	0	1	0
"seed germination"	"TAIR-GO"	9	0.00000000000044591654303041	1	0
"alanine degradation III"	"AraCyc"	9	0.0000000136653064776338	1	0.00614457929826276
"fermentation"	"FunCat"	9	0.00372169743192206	1	0.132577441766229
"oxidation of fatty acids "	"FunCat"	9	0.00000000000240817471681034	1	0.00242748554037876
"1- and 2-Methylnaphthalene degradation"	"KEGG"	9	0.00513287963793414	1	0.140352478419163
"light harvesting complex"	"BioPath"	8	0.000568588472985855	1	0.0274513342816482
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	8	0.00683218273039949	1	0.0372979917903227
"abscisic acid biosynthesis"	"TAIR-GO"	8	0.0221143041025981	1	0.110903946133654
"carotene biosynthesis"	"TAIR-GO"	8	0.0000193381320120488	1	0.0096521951159031
"carotenoid biosynthesis"	"TAIR-GO"	8	0.0170703109909628	1	0.0743980491529036
"chloroplast organization and biogenesis"	"TAIR-GO"	8	0.0000193381320120488	2	0.00335531871808537
"chloroplast stroma protein import"	"TAIR-GO"	8	0.0000000014432106533474	2	0.000191031251631233
"response to osmotic stress"	"TAIR-GO"	8	0.00000972650840197939	1	0.0185727210450737
"sugar mediated signaling"	"TAIR-GO"	8	0.00333629841335619	1	0.0430024649764884
"xanthophyll biosynthesis "	"TAIR-GO"	8	0	1	0
"galactose degradation I"	"AraCyc"	8	0.000011484267888126	2	0.0029369952856709
"isoleucine biosynthesis I"	"AraCyc"	8	0.00954427405982286	2	0.0346083421127511
"lactose degradation IV"	"AraCyc"	8	0.000011484267888126	2	0.0029369952856709
"valine biosynthesis"	"AraCyc"	8	0.00954427405982286	2	0.0346083421127511
"xanthophyll cycle"	"AraCyc"	8	0.000000132988966533908	1	0.00211241415964913
"electron / hydrogen transport "	"FunCat"	8	0.0000823934411044703	2	0.00212100233939804
"energy conversion and regeneration "	"FunCat"	8	0.00000000662459855274655	1	0.00704547665829906
"DNA-directed RNA polymerase II, holoenzyme"	"TAIR-GO"	7	0	1	0
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	7	0	1	0
"photoreactive repair"	"TAIR-GO"	7	0.000000290645541888605	1	0.00334475253972186
"protein amino acid glycosylation"	"TAIR-GO"	7	0	1	0
"ribose degradation"	"AraCyc"	7	0.000885626098660819	1	0.102937157009632
"superpathway of gluconate degradation"	"AraCyc"	7	0.000885626098660819	1	0.16634161832358
"protein modification "	"FunCat"	7	0.016028428749012	1	0.185621044277086
"rRNA synthesis "	"FunCat"	7	0.0000000787111933206454	1	0.00242748554037876
"tRNA synthesis "	"FunCat"	7	0.000397114551364723	1	0.0432635756653174