"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"ORGAN DATA SET"	"quantDE"	"3.892331"	"maxDE"	"5.1187872"	"ORGAN DATA SET"
"Glutamate metabolism"	"KEGG"	"31"	"8.06339981144946e-16"	"4"	"0.000753638047247384"
"C-compound and carbohydrate metabolism"	"FunCat"	"25"	"0.00266298577045295"	"5"	"0.0544491817865594"
"Glycolysis / Gluconeogenesis"	"KEGG"	"21"	"1.55745772772499e-05"	"4"	"0.00986615503248802"
"Nitrogen metabolism"	"KEGG"	"19"	"9.2382713841651e-08"	"2"	"0.0169264234763395"
"Intermediary Carbon Metabolism"	"BioPath"	"18"	"6.77066972605008e-10"	"4"	"0.000883174281731137"
"fermentation"	"FunCat"	"17"	"5.05940229589799e-20"	"3"	"6.97681253050717e-06"
"Tyrosine metabolism"	"KEGG"	"17"	"3.10620991529122e-07"	"3"	"0.00459708679115252"
"amino acid metabolism"	"FunCat"	"16"	"0.00202718582288512"	"2"	"0.0936444835510667"
"Calvin cycle"	"AraCyc"	"15"	"3.70484922829053e-09"	"3"	"0.00126531603721886"
"Alanine and aspartate metabolism"	"KEGG"	"15"	"3.71030641699500e-07"	"2"	"0.0155275766167852"
"ammonia assimilation cycle"	"AraCyc"	"14"	"3.43147677672948e-14"	"2"	"0.000156261098190379"
"Methane metabolism"	"KEGG"	"13"	"7.06383934023612e-05"	"3"	"0.0496110740199093"
"Tryptophan metabolism"	"KEGG"	"13"	"1.47328798959514e-06"	"2"	"0.0199299337997131"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"11"	"8.29861693608862e-12"	"2"	"0.000513146857770638"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"11"	"8.29861693608862e-12"	"2"	"0.000513146857770638"
"1- and 2-Methylnaphthalene degradation"	"KEGG"	"11"	"6.07641873225113e-10"	"2"	"0.000959467391044046"
"Bile acid biosynthesis"	"KEGG"	"11"	"3.38996444503316e-07"	"2"	"0.00232473310113921"
"Fatty acid metabolism"	"KEGG"	"11"	"0.00279450694125663"	"2"	"0.0199299337997131"
"Glycerolipid metabolism"	"KEGG"	"11"	"0.000844380252645209"	"2"	"0.0183937936638839"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"10"	"0.00353716577322682"	"1"	"0.217050988828405"
"Glutamate/glutamine from nitrogen fixation"	"BioPath"	"10"	"9.94958273521452e-13"	"1"	"0.00195319736574836"
"glutamine biosynthesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glutamine biosynthesis I"	"AraCyc"	"10"	"8.27399130637133e-10"	"1"	"0.0032244315764354"
"glutamine degradation III"	"AraCyc"	"10"	"2.12251470225278e-10"	"2"	"0.000221221005610643"
"nitrate assimilation pathway"	"AraCyc"	"10"	"2.96717314755431e-08"	"1"	"0.00674206885506822"
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	"10"	"1.64855951339945e-06"	"1"	"0.0201457093371491"
"nitrogen and sulfur metabolism"	"FunCat"	"10"	"2.12789219011132e-06"	"1"	"0.0183474966064304"
"Cyanoamino acid metabolism"	"KEGG"	"10"	"1.23889154211047e-05"	"2"	"0.00854919334809776"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"10"	"0.0340738964377089"	"1"	"0.29565784579625"
"Peptidoglycan biosynthesis"	"KEGG"	"10"	"3.11382426986263e-10"	"1"	"0.00282220136901276"
"calmodulin binding"	"TAIR-GO"	"9"	"1.88581937829903e-11"	"1"	"0.00352395925539636"
"cellular response to sulfate starvation"	"TAIR-GO"	"9"	"2.74440552233793e-18"	"1"	"4.72554698206317e-05"
"glucosinolate catabolism"	"TAIR-GO"	"9"	"2.74440552233793e-18"	"1"	"4.72554698206317e-05"
"glutamate degradation I"	"AraCyc"	"9"	"9.34799306700024e-10"	"1"	"0.00426420191029086"
"IAA biosynthesis"	"AraCyc"	"9"	"6.67324805657688e-07"	"1"	"0.00972832128758342"
"IAA biosynthesis I"	"AraCyc"	"9"	"2.42172755981474e-08"	"1"	"0.0054378992851767"
"plant / fungal specific systemic sensing and response "	"FunCat"	"9"	"1.48578076567269e-06"	"1"	"0.0166219164160259"
"plant hormonal regulation"	"FunCat"	"9"	"1.48578076567269e-06"	"1"	"0.0166219164160259"
"beta-Alanine metabolism"	"KEGG"	"9"	"9.36653568920266e-05"	"1"	"0.0454249105522934"
"Butanoate metabolism"	"KEGG"	"9"	"0.000481557451614661"	"1"	"0.0679137242027782"
"Taurine and hypotaurine metabolism"	"KEGG"	"9"	"2.91530230405181e-10"	"1"	"0.00282220136901276"
"Cysteine metabolism"	"KEGG"	"8"	"0.00601043643739116"	"2"	"0.0106096283187565"
"Pentose phosphate pathway"	"KEGG"	"8"	"0.0158118522754427"	"2"	"0.0326139475007977"
"photoreactive repair"	"TAIR-GO"	"7"	"3.18348192716836e-15"	"1"	"4.72554698206317e-05"
"response to UV"	"TAIR-GO"	"7"	"2.05897782658751e-07"	"1"	"0.00352395925539636"
"ribose degradation"	"AraCyc"	"7"	"4.27952907886915e-08"	"1"	"0.00972832128758342"
"superpathway of gluconate degradation"	"AraCyc"	"7"	"4.27952907886915e-08"	"1"	"0.0171213963527595"
"STRESS DATA SET"	"quantDE"	"1.080619"	"maxDE"	"4.54092"	"STRESS DATA SET"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"22"	"1.91355997355557e-20"	"7"	"3.63695806439965e-07"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"14"	"1.33729604531160e-09"	"2"	"0.0362867029159186"
"detoxification"	"FunCat"	"12"	"0"	"2"	"0"
"Methane metabolism"	"KEGG"	"12"	"2.08434740965939e-11"	"6"	"1.40247937439615e-06"
"Phenylalanine metabolism"	"KEGG"	"12"	"1.05309233876606e-09"	"6"	"2.28686680479645e-06"
"Prostaglandin and leukotriene metabolism"	"KEGG"	"12"	"6.96657832026594e-14"	"6"	"3.04252618262661e-07"
"fatty acid metabolism"	"TAIR-GO"	"10"	"5.33718532354673e-19"	"1"	"0.000155787263144940"
"detoxification involving cytochrome P450 "	"FunCat"	"10"	"4.08615152991858e-22"	"1"	"0.000601569160193434"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"3.52882759901994e-10"	"1"	"0.0144579317217481"
"Fluorene degradation"	"KEGG"	"10"	"1.70350999466779e-12"	"1"	"0.00529872409765922"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"8.60831005581692e-12"	"1"	"0.00680009476721487"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	"10"	"0.00514675978516356"	"5"	"0.0019141983890274"
"fatty acid modulation"	"LitPath"	"10"	"1.24125685634532e-23"	"1"	"1.30332216820676e-05"
"HORMONE DATA SET"	"quantDE"	"1.026489"	"maxDE"	"1.5135286"	"HORMONE DATA SET"
"MUTANT DATA SET"	"quantDE"	"1.824323"	"maxDE"	"3.561886541"	"MUTANT DATA SET"
"Valine, leucine and isoleucine degradation"	"KEGG"	"18"	"1.26581437304110e-11"	"3"	"0.00134925881597444"
"Phenylalanine metabolism"	"KEGG"	"16"	"6.05985374591974e-07"	"3"	"0.0334272171180141"
"Alkaloid biosynthesis I"	"KEGG"	"14"	"8.24647422603885e-10"	"2"	"0.00339822140781134"
"Arginine and proline metabolism"	"KEGG"	"14"	"3.59333125039706e-07"	"2"	"0.0207685899536033"
"Tyrosine metabolism"	"KEGG"	"14"	"4.04008356319881e-07"	"2"	"0.0182308188485747"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"14"	"1.00947524777647e-14"	"2"	"0.000378759687538635"
"aspartate degradation I"	"AraCyc"	"12"	"5.21298785604666e-10"	"2"	"0.00177802427319493"
"aspartate degradation II"	"AraCyc"	"12"	"9.50838994862662e-13"	"2"	"0.000408971396667045"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"10"	"5.01590253510613e-14"	"1"	"0.00191183434900651"
"leaf senescence"	"TAIR-GO"	"10"	"0"	"1"	"0"
"leucine catabolism"	"TAIR-GO"	"10"	"3.49471073344351e-19"	"1"	"5.59499508861389e-05"
"nitrogen compound metabolism"	"TAIR-GO"	"10"	"4.56809320116985e-20"	"1"	"5.59499508861389e-05"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"2.53608829900375e-15"	"1"	"0.000277756976894884"
"asparagine biosynthesis I"	"AraCyc"	"10"	"2.95704507400111e-13"	"1"	"0.00179734778886573"
"asparagine degradation I"	"AraCyc"	"10"	"9.80849833996057e-11"	"1"	"0.00856541948703024"
"aspartate biosynthesis and degradation"	"AraCyc"	"10"	"2.38695251957936e-14"	"1"	"0.00129156899558356"
"glutamine degradation III"	"AraCyc"	"10"	"4.57975126618379e-13"	"1"	"0.00378262984147997"
"leucine degradation I"	"AraCyc"	"10"	"1.07992629359044e-08"	"1"	"0.0213366546519214"
"leucine degradation II"	"AraCyc"	"10"	"5.37577682083217e-12"	"1"	"0.00548165721302786"
"amino acid metabolism"	"FunCat"	"10"	"0.000241566596391217"	"1"	"0.0266038310565501"
"biogenesis of chloroplast"	"FunCat"	"10"	"1.54146224625778e-06"	"1"	"0.00978530020698985"
"biosynthesis of phenylpropanoids"	"FunCat"	"10"	"4.21661574393520e-10"	"1"	"0.00310606471804709"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"10"	"4.21661574393520e-10"	"1"	"0.00310606471804709"
"lipid, fatty acid and isoprenoid degradation"	"FunCat"	"10"	"1.75043329231163e-11"	"1"	"0.00196096974034388"
"metabolism of the aspartate family"	"FunCat"	"10"	"2.86308619836171e-17"	"1"	"0.000160302602814341"
"nitrogen and sulfur biogenesis of chloroplast"	"FunCat"	"10"	"0"	"1"	"0"
"Alanine and aspartate metabolism"	"KEGG"	"10"	"3.44646507776462e-05"	"1"	"0.0702176310837277"
"Carbon fixation"	"KEGG"	"10"	"0.0102147336769412"	"1"	"0.233697044811303"
"Cysteine metabolism"	"KEGG"	"10"	"2.37344416872239e-05"	"1"	"0.0549197841956764"
"Glutamate metabolism"	"KEGG"	"10"	"0.001854403267652"	"1"	"0.122685903664256"
"Novobiocin biosynthesis"	"KEGG"	"10"	"9.07841505131604e-09"	"1"	"0.0138364697355388"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"10"	"0.00139421392422273"	"1"	"0.122685903664256"
"Phenylpropanoid pathway"	"LitPath"	"10"	"0"	"1"	"0"
"Butanoate metabolism"	"KEGG"	"8"	"0.000161750083294496"	"2"	"0.00492560943849451"
"Histidine metabolism"	"KEGG"	"8"	"3.33418728760615e-06"	"2"	"0.00220330023271191"
"Lysine degradation"	"KEGG"	"8"	"3.02908682159483e-06"	"2"	"0.00339822140781134"