"Pathway" "Pathway.source" "Annotation.score" "p.value.score" "No.of.genes" "p.value.genes" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "ORGAN DATA SET" "quantDE" "2.998221" "maxDE" "4.8090699" "ORGAN DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "28" "7.01867540490369e-13" "4" "0.0045179964900199" "C-compound and carbohydrate metabolism" "FunCat" "18" "3.53676040350158e-06" "3" "0.0321482004457211" "Intermediary Carbon Metabolism" "BioPath" "12" "4.57599727941411e-05" "2" "0.0179450342051473" "allantoin degradation" "AraCyc" "12" "6.75539535257148e-27" "2" "7.69608469677625e-08" "isoleucine biosynthesis I" "AraCyc" "12" "1.31884026185653e-17" "2" "4.15447008084059e-05" "leucine biosynthesis" "AraCyc" "12" "1.31884026185653e-17" "2" "4.15447008084059e-05" "valine biosynthesis" "AraCyc" "12" "1.31884026185653e-17" "2" "4.15447008084059e-05" "fermentation" "FunCat" "12" "4.85223242518492e-18" "2" "2.50944064113629e-05" "Glycolysis / Gluconeogenesis" "KEGG" "12" "1.10323190693072e-09" "2" "0.00765799271947365" "GDP-carbohydrate biosynthesis" "BioPath" "10" "1.96668027690229e-15" "1" "0.00056685446875811" "de novo' GDP-L-fucose biosynthesis" "TAIR-GO" "10" "0" "1" "0" "growth" "TAIR-GO" "10" "4.42772149043424e-11" "1" "0.00383657134631592" "L-fucose biosynthesis" "TAIR-GO" "10" "0" "1" "0" "unidimensional cell growth" "TAIR-GO" "10" "1.63541109896298e-13" "1" "0.00110892641447936" "colanic acid building blocks biosynthesis" "AraCyc" "10" "3.75065888842003e-08" "1" "0.0256003582472413" "GDP-D-rhamnose biosynthesis" "AraCyc" "10" "4.77366105192506e-15" "1" "0.00123356047904651" "biogenesis of cell wall" "FunCat" "10" "6.70453401889508e-08" "1" "0.0367181511437676" "C-compound and carbohydrate utilization " "FunCat" "10" "4.28294699900321e-24" "1" "2.16353434971369e-05" "Fructose and mannose metabolism" "KEGG" "10" "1.28397700967227e-09" "1" "0.0248727769898564" "ascorbic acid biosynthesis" "BioPath" "8" "4.1448573727597e-09" "1" "0.00258732190739604" "ascorbate glutathione cycle" "AraCyc" "8" "1.45556246905227e-09" "1" "0.00221899651607848" "Ascorbate and aldarate metabolism" "KEGG" "8" "5.51901049099305e-09" "1" "0.00771652751036429" "response to osmotic stress" "TAIR-GO" "7" "3.6372333065677e-14" "1" "8.68853042407226e-05" "fatty acid biosynthesis -- initial steps" "AraCyc" "7" "1.76452946873563e-06" "1" "0.00878863074940074" "STRESS DATA SET" "quantDE" "1.533806" "maxDE" "5.895847" "STRESS DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "12" "0.00095458692477346" "2" "0.0683353861649822" "Methane metabolism" "KEGG" "12" "8.7740688367164e-14" "4" "2.38661578479182e-05" "Phenylalanine metabolism" "KEGG" "12" "4.97866535748848e-12" "4" "3.38406713123681e-05" "Prostaglandin and leukotriene metabolism" "KEGG" "12" "2.62300791697274e-16" "4" "8.04862069848121e-06" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "12" "4.04480325932274e-11" "4" "6.33220001132814e-05" "GDP-carbohydrate biosynthesis" "BioPath" "10" "8.13091091583487e-17" "1" "0.000354133734189271" "Glucosyltransferases for benzoic acids" "BioPath" "10" "3.94328036845e-13" "1" "0.000611054055091855" "Phenylpropanoid Metabolism" "BioPath" "10" "0.000310765311433697" "1" "0.0904418948805069" "colanic acid building blocks biosynthesis" "AraCyc" "10" "4.88464395121802e-09" "1" "0.0136482347463622" "dTDP-rhamnose biosynthesis" "AraCyc" "10" "1.71056356238571e-10" "1" "0.0081960373288413" "flavonol biosynthesis" "AraCyc" "10" "1.20933300556466e-14" "1" "0.00179893894519949" "galactose degradation I" "AraCyc" "10" "8.5005958535913e-20" "1" "0.000203638884668495" "glucose conversion" "AraCyc" "10" "6.84491242732793e-11" "1" "0.00711873195738734" "lactose degradation IV" "AraCyc" "10" "8.5005958535913e-20" "1" "0.000203638884668495" "UDP-glucose conversion" "AraCyc" "10" "5.18393459312066e-11" "1" "0.0067752233059512" "Fructose and mannose metabolism" "KEGG" "10" "4.40141978576832e-10" "1" "0.0185321296260179" "HORMONE DATA SET" "quantDE" "1.556237" "maxDE" "4.3404288" "HORMONE DATA SET" "response to osmotic stress" "TAIR-GO" "7" "0" "1" "0" "fatty acid biosynthesis -- initial steps" "AraCyc" "7" "6.12785586666777e-14" "1" "0.000613026446097154" "MUTANT DATA SET" "quantDE" "1.930693" "maxDE" "9.223859784" "MUTANT DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "195.5" "9.63134127128257e-18" "60" "1.42086020137402e-07" "C-compound and carbohydrate metabolism" "FunCat" "113" "6.10050324017263e-05" "28" "0.0233849324364086" "pectin metabolism" "BioPath" "90.5" "2.95998076086424e-21" "41" "2.54182869135187e-11" "Phenylpropanoid Metabolism" "BioPath" "88" "0.0126237408592120" "15" "0.61122327418383" "Ribosome" "KEGG" "88" "0.0295725174605057" "17" "0.518407482448703" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "66" "3.53170675102154e-08" "11" "0.0156628342983993" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "56" "0.0207957943941826" "11" "0.140970816549933" "Biosynthesis of prenyl diphosphates" "BioPath" "52" "1.29169741157974e-08" "9" "0.00776113666969206" "Nucleotide Metabolism" "KEGG" "51" "6.41294053308069e-11" "10" "0.0161556102152353" "Purine metabolism" "KEGG" "47" "3.27988014040771e-11" "9" "0.00820523168808997" "Lipid signaling" "AcylLipid" "43" "0.0144943274064389" "9" "0.330244274748249" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "42" "8.52779504690434e-05" "5" "0.445026368817577" "cellulose biosynthesis" "BioPath" "42" "7.75432164826224e-08" "8" "0.0256618575919096" "Starch and sucrose metabolism" "KEGG" "39" "0.000369591269256398" "10" "0.0147067808169164" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "38" "1.68677601492494e-05" "8" "0.0121999418447406" "terpenoid metabolism" "LitPath" "38" "1.93785529224965e-05" "8" "0.0151805099367869" "lactose degradation IV" "AraCyc" "37" "0" "8" "0" "biogenesis of cell wall" "FunCat" "36" "1.76153947226600e-05" "12" "0.00080805327000436" "nucleotide metabolism" "FunCat" "36" "0" "8" "0" "Biosynthesis of steroids" "KEGG" "36" "7.71509117025133e-05" "6" "0.0397294723160220" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "36" "2.04266789851858e-07" "4" "0.181994937739742" "transport " "FunCat" "34" "0" "10" "0" "aromatic amino acid family biosynthesis" "TAIR-GO" "30" "3.761049802304e-18" "3" "0.00187520866569679" "trans-zeatin biosynthesis" "AraCyc" "30" "5.50153753651202e-27" "6" "1.19204321435039e-07" "transport facilitation" "FunCat" "30" "0" "9" "0" "Translation factors" "KEGG" "30" "0.00137274706283611" "9" "0.0777224383011555" "gibberellin biosynthesis" "AraCyc" "29" "6.80168343218857e-14" "5" "0.000129120538500061" "brassinosteroid biosynthesis" "LitPath" "29" "0.00868988809486736" "3" "0.284343013338840" "intracellular signalling" "FunCat" "28.5" "4.07269844944282e-05" "7" "0.0536694241627068" "acetate fermentation" "AraCyc" "28" "0.032327271420892" "7" "0.154114511318062" "cellulose biosynthesis" "AraCyc" "28" "0.000748717287693112" "5" "0.122007025796070" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "28" "0.0186502132756060" "5" "0.212065841305240" "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" "28" "3.5134533079014e-05" "4" "0.0340144744040288" "colanic acid building blocks biosynthesis" "AraCyc" "27" "0.00635629388907082" "5" "0.265780291324428" "galactose degradation I" "AraCyc" "27" "7.94669831720079e-33" "5" "1.36965593658854e-06" "lipases pathway" "AraCyc" "27" "4.88907857697055e-07" "5" "0.0127013187306504" "dTDP-rhamnose biosynthesis" "AraCyc" "26" "0.000103074591695147" "5" "0.112255829044399" "fructose degradation (anaerobic)" "AraCyc" "26" "0.043281691642631" "7" "0.111915317395661" "glycolysis IV" "AraCyc" "26" "0.0467738078622620" "7" "0.119792133966057" "Fructose and mannose metabolism" "KEGG" "26" "0.000810341129799579" "4" "0.220021652720117" "Pyrimidine metabolism" "KEGG" "26" "1.19427539123847e-06" "6" "0.0197953703034828" "Transcription" "KEGG" "26" "0.00731641259321403" "9" "0.041735443234757" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "25" "4.5304163309017e-18" "4" "5.03955589333281e-05" "Flavonoid and anthocyanin metabolism" "BioPath" "24" "0.00496243701162551" "6" "0.280625598949791" "alanine biosynthesis II" "AraCyc" "24" "3.58333592213342e-07" "4" "0.0399370674132313" "de novo biosynthesis of purine nucleotides II" "AraCyc" "24" "1.18240700926971e-06" "5" "0.049852338937237" "phenylalanine biosynthesis II" "AraCyc" "24" "7.16290731215444e-09" "4" "0.0239433776145630" "C-compound, carbohydrate catabolism" "FunCat" "24" "8.57805627367313e-06" "6" "0.0325417150716370" "lipid, fatty acid and isoprenoid degradation" "FunCat" "23" "2.02244054286395e-06" "3" "0.144676425640831" "sucrose degradation III" "AraCyc" "22" "9.40843712311406e-09" "5" "0.00085629980735716" "Synthesis of fatty acids in plastids" "AcylLipid" "22" "0.00865960821211295" "4" "0.114830544334690" "aspartate/ornithin cycle / nitric oxid from glutamate" "BioPath" "20" "3.34220002477492e-09" "2" "0.147425597040172" "GDP-carbohydrate biosynthesis" "BioPath" "20" "9.13001613733645e-10" "3" "0.0112979303134804" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "20" "5.38715336506993e-11" "2" "0.0109907928388345" "(deoxy)ribose phosphate degradation" "AraCyc" "20" "1.51599892136622e-10" "4" "0.000853390626094278" "mixed acid fermentation" "AraCyc" "20" "0.0072643311676953" "5" "0.049852338937237" "trehalose biosynthesis III" "AraCyc" "20" "0.00127708880686746" "5" "0.0337941517606950" "tryptophan biosynthesis" "AraCyc" "20" "0.00106246930765221" "3" "0.138136186181341" "tyrosine biosynthesis I" "AraCyc" "20" "7.80909561593319e-12" "2" "0.027370039377539" "pyrimidine nucleotide metabolism" "FunCat" "20" "5.46634145465518e-09" "4" "0.00706546463946235" "brassinosteroid biosynthesis" "TAIR-GO" "19" "8.22662806598625e-09" "2" "0.0109907928388345" "gibberellic acid biosynthesis" "TAIR-GO" "19" "2.84888699024371e-09" "2" "0.00848987999942765" "steroid biosynthesis" "TAIR-GO" "19" "8.22662806598625e-09" "2" "0.0109907928388345" "Phosphatidylinositol signaling system" "KEGG" "19" "0.00122317350254285" "4" "0.0866764268322188" "Signal Transduction" "KEGG" "19" "0.00196788012126679" "4" "0.0956103352517098" "proanthocyanidin biosynthesis" "TAIR-GO" "18" "1.43494813186431e-21" "2" "6.52701761345654e-05" "response to light" "TAIR-GO" "18" "0.000183009371455557" "3" "0.0608922047179024" "abscisic acid biosynthesis" "AraCyc" "18" "4.43573513584395e-15" "3" "0.000167467218050192" "non-phosphorylated glucose degradation" "AraCyc" "18" "8.35173473933098e-05" "5" "0.0337941517606950" "triacylglycerol degradation" "AraCyc" "18" "0.00139239254388741" "8" "0.0192314718122533" "Terpenoid biosynthesis" "KEGG" "18" "0.000247203298171452" "3" "0.0642593743133963" "abscisic acid biosynthesis" "LitPath" "18" "6.47361231307277e-07" "3" "0.0122522586359473" "glucose conversion" "AraCyc" "17" "0.0357167109954445" "4" "0.195380811234721" "peptidoglycan biosynthesis" "AraCyc" "17" "3.41526811789452e-12" "4" "0.00012585313918546" "UDP-glucose conversion" "AraCyc" "17" "0.0286241363093009" "4" "0.181650040046383" "transcription" "FunCat" "17" "4.32805988421666e-09" "4" "0.00276145802859313" "Chloroplastic protein import via envelope membrane" "BioPath" "16" "0.000461961555670209" "4" "0.0307117268777334" "cytokinin biosynthesis" "TAIR-GO" "16" "2.84405679984282e-16" "2" "0.000253388148065259" "tryptophan biosynthesis" "TAIR-GO" "16" "2.51698915320084e-05" "2" "0.0293367025537056" "biosynthesis of pyrimidine ribonucleotides" "AraCyc" "16" "0.000358140031390871" "3" "0.097816062182261" "de novo biosynthesis of pyrimidine ribonucleotides" "AraCyc" "16" "0.000274820035829325" "3" "0.0857975783930451" "sucrose biosynthesis" "AraCyc" "16" "0.00221041995238329" "3" "0.0641071283230429" "energy" "FunCat" "16" "7.8246428519143e-20" "4" "0" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "16" "0" "4" "0" "Cyanoamino acid metabolism" "KEGG" "16" "0.000113156668502351" "5" "0.00651052909604164" "DNA polymerase" "KEGG" "16" "3.02057397898379e-10" "4" "0.00381447212929125" "Ligand-Receptor Interaction" "KEGG" "16" "0.00194452648136492" "8" "0.00820211463037699" "degradation " "FunCat" "15" "0.00296416573534517" "3" "0.130578991278451" "RNA synthesis " "FunCat" "15" "0.00383729855140400" "3" "0.144676425640831" "Basal transcription factors" "KEGG" "15" "0.000487923464604269" "5" "0.0330729763152727" "Prolin/Hydroxyproline from glutamate" "BioPath" "14" "6.56864705628276e-06" "3" "0.0112979303134804" "sucrose metabolism" "BioPath" "14" "0.0375150615613410" "2" "0.277702381846471" "jasmonic acid biosynthesis" "TAIR-GO" "14" "0.000423562844324435" "2" "0.0394378604071041" "jasmonic acid biosynthesis" "AraCyc" "14" "0.0291862610118908" "2" "0.159336432916177" "purine nucleotide metabolism" "FunCat" "14" "0.00566749792622528" "3" "0.0700130789017129" "Ion channels" "KEGG" "14" "0.00854342122023922" "7" "0.0195272330043949" "Prostaglandin and leukotriene metabolism" "KEGG" "14" "0.00658306185210904" "7" "0.083510462294408" "cell growth / morphogenesis " "FunCat" "13" "3.13203297195686e-10" "2" "0.0038730081389235" "second messenger mediated signal transduction" "FunCat" "13" "1.38889285116364e-12" "2" "0.00164139402793802" "abscisic acid biosynthesis" "TAIR-GO" "12" "4.85528355978119e-06" "2" "0.00635964791396345" "anthocyanin biosynthesis" "AraCyc" "12" "5.94923961473299e-05" "2" "0.0478905692155916" "nitrogen and sulfur utilization " "FunCat" "12" "0.00205904821826713" "2" "0.0453961172296092" "Aminosugars metabolism" "KEGG" "12" "0.000369958216558567" "3" "0.055528297635062" "response to UV" "TAIR-GO" "11" "0.00123653962531522" "2" "0.0138734441936566" "starch biosynthesis" "AraCyc" "11" "0" "2" "0" "Lysin from aspartate" "BioPath" "10" "1.78034865648262e-06" "1" "0.0768336198006937" "trehalose metabolism" "BioPath" "10" "0.000492515930595271" "2" "0.124300746367244" "acyl-CoA binding" "TAIR-GO" "10" "2.59038962043066e-11" "1" "0.00164095917179337" "anther dehiscence" "TAIR-GO" "10" "0" "1" "0" "anthranilate synthase complex" "TAIR-GO" "10" "5.54601525389856e-11" "1" "0.00164095917179337" "aromatic amino acid family biosynthesis, anthranilate pathway" "TAIR-GO" "10" "0" "1" "0" "gibberellic acid mediated signaling" "TAIR-GO" "10" "4.05227988284619e-06" "1" "0.0151422530641876" "glucosinolate biosynthesis" "TAIR-GO" "10" "0.000376781099455505" "1" "0.0391533194704306" "lipid transport" "TAIR-GO" "10" "3.27981792744177e-06" "1" "0.0301522460745006" "monoterpenoid biosynthesis" "TAIR-GO" "10" "2.73209596435042e-07" "1" "0.00933128617815668" "oxygen binding" "TAIR-GO" "10" "5.54601525389856e-11" "1" "0.00164095917179337" "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" "TAIR-GO" "10" "1.67403518216723e-12" "1" "0.00164095917179337" "pollen maturation" "TAIR-GO" "10" "0" "1" "0" "porphyrin biosynthesis" "TAIR-GO" "10" "0.00103782473203974" "2" "0.0138734441936566" "response to biotic stimulus" "TAIR-GO" "10" "0" "1" "0" "response to hypoxia" "TAIR-GO" "10" "1.67403518216723e-12" "1" "0.00164095917179337" "unidimensional cell growth" "TAIR-GO" "10" "0.00387303816887221" "1" "0.0956795955206556" "galactokinase, colanic acid building blocks biosynthesis" "AraCyc" "10" "1.78038685990717e-06" "1" "0.0972575647843149" "galactokinase, galactose degradation I" "AraCyc" "10" "1.78038685990717e-06" "1" "0.0972575647843149" "galactokinase, lactose degradation IV" "AraCyc" "10" "1.78038685990717e-06" "1" "0.0972575647843149" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "8.57693983387642e-05" "1" "0.0324532533782848" "lysine biosynthesis I" "AraCyc" "10" "0.030315324638924" "1" "0.384861133922254" "methylglyoxal degradation" "AraCyc" "10" "0.00119149893870975" "2" "0.0889979561368207" "monoterpene biosynthesis" "AraCyc" "10" "2.68192803926518e-06" "1" "0.0171006346474762" "plant monoterpene biosynthesis" "AraCyc" "10" "1.14933458349463e-08" "1" "0.00600938917654995" "threonine degradation" "AraCyc" "10" "0.0099499332487256" "2" "0.220056178246842" "biosynthesis of derivatives of dehydroquinic acid, shikimic acid and chorismic acid" "FunCat" "10" "4.96230707663718e-12" "1" "0.0311936625955414" "biosynthesis of lysine" "FunCat" "10" "4.73076029212003e-08" "1" "0.0494074322332868" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "10" "0.0107115324793937" "2" "0.0846841364005025" "metabolism of the aspartate family" "FunCat" "10" "3.79341154018595e-05" "1" "0.118984104310908" "sugar, glucoside, polyol and carboxylate catabolism " "FunCat" "10" "0.00177441307913123" "2" "0.100150767252052" "Lysine biosynthesis" "KEGG" "10" "0.000426430871687293" "1" "0.204899027301547" "Membrane Transport" "KEGG" "10" "0.00754908123081518" "4" "0.0162384525825572" "brassinosteroid modulation" "LitPath" "10" "0.000436022921826629" "4" "0.0180185884065670" "Phe/Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "brassinosteroid metabolism" "TAIR-GO" "9" "7.0738470857631e-13" "1" "0.00164095917179337" "methylglyoxal catabolism" "TAIR-GO" "9" "3.75611651105931e-10" "1" "0.00164095917179337" "pollen germination" "TAIR-GO" "9" "5.1937275016926e-08" "1" "0.00479233716311097" "Thiamine metabolism" "KEGG" "9" "2.3415426444111e-05" "1" "0.1042717166241" "brassinosteroid degradation" "LitPath" "9" "1.49386556160254e-08" "1" "0.0166303908663183" "Sequestration of phenylpropanoids (cytosol --> vacuole)" "BioPath" "8" "3.66684673487819e-07" "1" "0.00935814653168815" "Tic apparatus" "BioPath" "8" "0.000313375401113937" "2" "0.0348564381597355" "Toc apparatus" "BioPath" "8" "0.0391501104357245" "2" "0.0826864181914536" "fatty acid elongation" "TAIR-GO" "8" "6.855293919034e-05" "1" "0.0301522460745006" "long-chain fatty acid metabolism" "TAIR-GO" "8" "0.0335550678390015" "1" "0.150468859943212" "maintenance of dormancy" "TAIR-GO" "8" "0" "1" "0" "very-long-chain fatty acid metabolism" "TAIR-GO" "8" "0.0101319566614768" "1" "0.122300286425066" "leucine biosynthesis" "AraCyc" "8" "0.0462649208955049" "2" "0.122291827128220" "general transcription activities" "FunCat" "8" "0.00781363027685804" "2" "0.0846841364005025" "protein folding and stabilization " "FunCat" "8" "5.08434619731987e-07" "2" "0.0038730081389235" "Folate biosynthesis" "KEGG" "8" "0.0240790192746724" "2" "0.0977191883581601" "calcium-mediated signaling" "TAIR-GO" "7" "2.18417197596780e-07" "1" "0.00479233716311097" "histone acetylation" "TAIR-GO" "7" "0" "1" "0" "photoreactive repair" "TAIR-GO" "7" "1.73265787183927e-08" "1" "0.00164095917179337" "transcription factor TFIID complex" "TAIR-GO" "7" "0" "1" "0" "C-compound and carbohydrate utilization " "FunCat" "7" "5.90853102478077e-07" "2" "0" "cytoskeleton" "FunCat" "7" "0" "1" "0" "directional cell growth (morphogenesis)" "FunCat" "7" "3.86432967353193e-08" "1" "0.0164175283117397" "RNA modification " "FunCat" "7" "5.90853102478077e-07" "1" "0.00576241920229458" "tRNA modification " "FunCat" "7" "0" "1" "0" "tRNA synthesis " "FunCat" "7" "0.00113018772905912" "1" "0.093803261586952"