"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "tryptophan biosynthesis" "TAIR-GO" "298" "41" "" "" "jasmonic acid biosynthesis" "TAIR-GO" "257" "35" "" "" "jasmonic acid biosynthesis" "AraCyc" "257" "35" "" "" "Glucosinolate Metabolism" "LitPath" "200" "20" "" "" "Lipid signaling" "AcylLipid" "185" "27" "" "" "response to wounding" "TAIR-GO" "170" "21" "" "" "Glutathione metabolism" "BioPath" "153" "18" "" "" "lipoxygenase pathway" "AraCyc" "137" "19" "" "" "sulfate assimilation III" "AraCyc" "117" "13" "" "" "Selenoamino acid metabolism" "KEGG" "114" "12" "" "" "Sulfur metabolism" "KEGG" "114" "12" "" "" "Purine metabolism" "KEGG" "96" "12" "" "" "response to jasmonic acid stimulus" "TAIR-GO" "94" "11" "" "" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "85" "11" "" "" "IAA biosynthesis" "AraCyc" "78" "8" "" "" "IAA biosynthesis I" "AraCyc" "78" "8" "" "" "chlorophyll catabolism" "TAIR-GO" "70" "7" "" "" "chlorophyll catabolism" "LitPath" "70" "7" "" "" "oxylipin pathway" "LitPath" "60" "6" "" "" "chloroplast envelope" "TAIR-GO" "40" "4" "" "" "galactolipid biosynthesis" "TAIR-GO" "40" "4" "" "" "glycolipid biosynthesis" "TAIR-GO" "40" "4" "" "" "lipid biosynthesis" "TAIR-GO" "40" "4" "" "" "response to stress" "TAIR-GO" "40" "4" "" "" "glycosylglyceride biosynthesis" "AraCyc" "40" "4" "" "" "ORGAN DATA SET" "quantDE" "5.704088" "maxDE" "7.2448441" "ORGAN DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "132" "5.90298121494621e-12" "17" "0.0277061735984581" "Photosystems " "BioPath" "131" "2.70488720324468e-26" "22" "2.4668901110857e-07" "Glucosinolate Metabolism" "LitPath" "130" "9.74554873203909e-133" "13" "8.49981109014022e-16" "Glutathione metabolism" "BioPath" "84" "4.56735388947605e-19" "11" "0.00181221199266783" "Photosystem I" "BioPath" "73" "8.11997531433872e-17" "13" "1.44582741402460e-05" "sulfate assimilation III" "AraCyc" "69" "2.42459091251697e-26" "8" "9.8243720465412e-05" "amino acid metabolism" "FunCat" "61" "5.27814180587511e-11" "8" "0.00710200062602751" "glucosinolate biosynthesis" "TAIR-GO" "60" "3.27317561959001e-56" "6" "1.33489624332089e-08" "Photosynthesis" "KEGG" "57" "8.20967137583562e-32" "11" "5.90478652611397e-10" "biogenesis of chloroplast" "FunCat" "56" "6.14153552125889e-19" "10" "3.84260375408862e-06" "Selenoamino acid metabolism" "KEGG" "54" "1.53811424417454e-26" "6" "7.12662373192081e-05" "Sulfur metabolism" "KEGG" "54" "7.2472933833334e-31" "6" "7.6179655465602e-06" "photosynthesis" "FunCat" "47" "7.48830237772774e-20" "8" "1.05266846267695e-05" "Lipid signaling" "AcylLipid" "47" "5.05506115759546e-08" "8" "0.0376990658820818" "cysteine biosynthesis I" "AraCyc" "44" "1.34213663992319e-13" "8" "0.000392207748263897" "glycolysis and gluconeogenesis" "FunCat" "42" "4.23484982387275e-05" "7" "0.0416054000194053" "Carbon fixation" "KEGG" "41" "6.03843702294744e-08" "6" "0.00846396329261902" "glucosinolate biosynthesis from homomethionine" "AraCyc" "40" "6.75596342044298e-39" "4" "7.7009266301451e-07" "additional photosystem II components" "BioPath" "36" "0.000177749082949491" "6" "0.013784086557554" "response to wounding" "TAIR-GO" "36" "1.78458266338740e-10" "4" "0.0069195249651771" "jasmonic acid biosynthesis" "TAIR-GO" "33" "6.36726763059376e-12" "4" "0.00351054431469477" "jasmonic acid biosynthesis" "AraCyc" "33" "2.51432579104947e-12" "4" "0.00343749016825564" "Ascorbate and aldarate metabolism" "KEGG" "33" "4.49807541207e-13" "4" "0.00171678637492073" "Flavonoid and anthocyanin metabolism" "BioPath" "32" "5.48122523887684e-06" "5" "0.163000763130309" "photosystem I reaction center" "BioPath" "32" "3.78274748076548e-29" "7" "3.15102169325688e-09" "Purine metabolism" "KEGG" "32" "1.41295992828300e-05" "4" "0.0645546431215024" "photosystem I" "TAIR-GO" "31" "6.4917990904694e-27" "4" "1.11024446034022e-05" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "31" "0.000261897998361643" "4" "0.288183138349053" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "30" "2.82201397116673e-28" "3" "1.29616018260122e-05" "glucosinolate biosynthesis from tryptophan" "AraCyc" "30" "0" "3" "0" "nitrogen and sulfur metabolism" "FunCat" "30" "2.41862532416179e-14" "3" "0.00388887871321532" "Fluorene degradation" "KEGG" "29" "3.34574226969486e-16" "3" "0.00164834234862860" "gamma-Hexachlorocyclohexane degradation" "KEGG" "29" "2.584823202533e-14" "3" "0.00271620975464259" "Glutamate metabolism" "KEGG" "28" "9.07230163621029e-05" "3" "0.0684322359336937" "Nitrogen metabolism" "KEGG" "28" "8.98391991536824e-06" "5" "0.000844088417932983" "gluconeogenesis" "AraCyc" "27" "0.00296383551126698" "4" "0.132226562925775" "lactose degradation IV" "AraCyc" "27" "5.69749270044918e-33" "6" "2.68609560124975e-09" "response to jasmonic acid stimulus" "TAIR-GO" "26" "4.96013179965668e-18" "3" "0.000318782867704546" "Calvin cycle" "AraCyc" "26" "0.000138785804171993" "4" "0.0758048779294428" "dissimilatory sulfate reduction" "AraCyc" "26" "1.98863072104905e-15" "3" "0.000392104611162002" "photorespiration" "AraCyc" "25" "9.71323578629288e-07" "6" "0.00352725689829766" "Chlorophyll a/b binding proteins" "BioPath" "24" "9.54074426401457e-05" "3" "0.0349502955610952" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "24" "5.70797146092178e-10" "3" "0.00468098336128387" "nitrogen and sulfur utilization " "FunCat" "24" "1.86691567450316e-16" "3" "0.000334853019224983" "Cysteine metabolism" "KEGG" "24" "5.4643307933112e-07" "3" "0.0151311741845494" "lipoxygenase pathway" "AraCyc" "23" "7.90624766594369e-10" "3" "0.00435749986604012" "Glycan Biosynthesis and Metabolism" "KEGG" "23" "0.0105336940949517" "4" "0.0763404662622282" "trehalose biosynthesis III" "AraCyc" "22" "0.000171500998645094" "3" "0.123994435961126" "ATP synthase components" "BioPath" "20" "9.80793169959471e-09" "3" "0.00305402307704518" "Glutamate/glutamine from nitrogen fixation" "BioPath" "20" "3.04127193472451e-05" "2" "0.052335385029335" "Transcription (chloroplast)" "BioPath" "20" "4.05919504209525e-10" "2" "0.00864433224643715" "cysteine biosynthesis" "TAIR-GO" "20" "9.0754481643255e-19" "2" "0.000186004113430411" "indoleacetic acid biosynthesis" "TAIR-GO" "20" "1.60167888078495e-14" "2" "0.00170694103634529" "photosynthesis" "TAIR-GO" "20" "0.000247162247730944" "3" "0.0246325979526597" "sulfate assimilation" "TAIR-GO" "20" "1.08641999864563e-09" "2" "0.00841043650946319" "transcription initiation" "TAIR-GO" "20" "4.24507512153957e-10" "2" "0.00841043650946319" "tryptophan biosynthesis" "TAIR-GO" "20" "0.000130697512754342" "2" "0.0700142891725537" "tryptophan catabolism" "TAIR-GO" "20" "0" "2" "0" "ammonia assimilation cycle" "AraCyc" "20" "8.98917523063333e-09" "2" "0.0138988300350703" "glutamine biosynthesis I" "AraCyc" "20" "7.45472901201657e-10" "2" "0.00633832420558994" "IAA biosynthesis" "AraCyc" "20" "1.77305810452121e-06" "2" "0.0318261791484763" "IAA biosynthesis I" "AraCyc" "20" "2.73664371402626e-09" "2" "0.0138988300350703" "nitrate assimilation pathway" "AraCyc" "20" "4.45882371569339e-07" "2" "0.0189832509743565" "Pentose phosphate pathway" "KEGG" "20" "0.000576398250610228" "3" "0.0593095054005189" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "20" "0.0213272578072322" "2" "0.202862731724747" "photorespiration" "TAIR-GO" "19" "1.00484022363186e-15" "3" "4.98717001425847e-05" "alanine biosynthesis II" "AraCyc" "19" "0.000130614263154635" "2" "0.188929626647458" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "19" "0.00122660472712615" "3" "0.0474341068463554" "secondary metabolism" "FunCat" "19" "0.00148906801643907" "4" "0.0497766128990793" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "19" "0.00564015989504002" "4" "0.0679360279059095" "Branched-chain amino acids from aspartate" "BioPath" "18" "0.0160147535185817" "3" "0.0834487373776819" "glucose and glucose-1-phosphate degradation" "AraCyc" "18" "6.49908348009221e-09" "2" "0.0395741268918191" "leucine biosynthesis" "AraCyc" "18" "9.51187929796346e-08" "3" "0.0132353676057357" "starch biosynthesis" "AraCyc" "18" "0" "2" "0" "Alanine and aspartate metabolism" "KEGG" "18" "0.000839905663437673" "2" "0.100092918875125" "calmodulin binding" "TAIR-GO" "17" "1.13809748175958e-06" "2" "0.0347835534701441" "photosystem I subunit precursor" "BioPath" "16" "5.16889232461808e-14" "2" "0.00273333306850832" "phenylalanine degradation I" "AraCyc" "16" "0.0176383511592688" "2" "0.220777820151807" "transport " "FunCat" "16" "9.92401019851543e-24" "3" "0" "response to water deprivation" "TAIR-GO" "15" "0" "2" "0" "galactose degradation I" "AraCyc" "15" "5.36878264363218e-12" "4" "1.46172109289133e-05" "superpathway of serine and glycine biosynthesis II" "AraCyc" "15" "0.000101538299760154" "4" "0.00866639416039476" "stress response" "FunCat" "15" "0" "2" "0" "ascorbic acid biosynthesis" "BioPath" "14" "0.040342600100418" "2" "0.164914775224981" "cysteine biosynthesis II" "AraCyc" "14" "0.000463596803793716" "5" "0.00191883245865578" "transport ATPases" "FunCat" "14" "0.00101700424846261" "2" "0.0911131455323384" "transport facilitation" "FunCat" "14" "0" "2" "3.72122349937911e-05" "ATP synthesis" "KEGG" "14" "0.0442259922705237" "2" "0.175079854015996" "Glyoxylate and dicarboxylate metabolism" "KEGG" "14" "0.0098582793812322" "3" "0.0171680570800989" "Valine, leucine and isoleucine biosynthesis" "KEGG" "14" "0.0164969322532299" "2" "0.100092918875125" "photosystem II" "TAIR-GO" "13" "2.37114915538563e-08" "2" "0.00170694103634529" "starch catabolism" "TAIR-GO" "13" "1.14184409172378e-11" "2" "0.000186004113430411" "homocysteine and cysteine interconversion" "AraCyc" "13" "5.12820258346025e-05" "2" "0.0189832509743565" "starch degradation" "AraCyc" "13" "0.00231161381595101" "2" "0.0576264206616441" "Ferredoxin" "BioPath" "12" "7.8043361950411e-06" "2" "0.0187593192208034" "cyanate degradation" "AraCyc" "12" "2.57287863290109e-07" "2" "0.0395741268918191" "C-compound and carbohydrate utilization " "FunCat" "12" "4.08130376732841e-18" "2" "0" "degradation " "FunCat" "12" "0.000458576882222564" "2" "0.055117360385864" "nucleotide metabolism" "FunCat" "12" "0" "2" "0" "chlorophyll A apoprotein" "BioPath" "10" "4.84439046430333e-09" "1" "0.0129905897566542" "light harvesting complex" "BioPath" "10" "0.000467081461892134" "1" "0.0567454116395882" "mRNA processing in chloroplast" "BioPath" "10" "0.002439095750782" "3" "0.00646754641315629" "Other cell wall metabolism related enzymes" "BioPath" "10" "2.23588900053982e-08" "1" "0.00453199879609448" "Transcriptional regulators (chloroplast)" "BioPath" "10" "2.23588900053982e-08" "1" "0.00453199879609448" "aging" "TAIR-GO" "10" "0.00159075088941147" "1" "0.0732440607067663" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "5.85817714881799e-05" "1" "0.0292949062012336" "cell communication" "TAIR-GO" "10" "0" "1" "0" "chlorophyll catabolism" "TAIR-GO" "10" "1.54622965480471e-06" "1" "0.00948620978495097" "chloroplast ATP synthase complex" "TAIR-GO" "10" "8.73851395439042e-09" "1" "0.00328607267060393" "chloroplast envelope" "TAIR-GO" "10" "0" "1" "0" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "galactolipid biosynthesis" "TAIR-GO" "10" "0.000315711816724658" "1" "0.0292949062012336" "glycolipid biosynthesis" "TAIR-GO" "10" "2.09717126105636e-05" "1" "0.0182597201352783" "hypersensitive response" "TAIR-GO" "10" "0.000452732440926485" "1" "0.0423069010070427" "indole glucosinolate biosynthesis" "TAIR-GO" "10" "0" "1" "0" "lipid biosynthesis" "TAIR-GO" "10" "0.000315711816724658" "1" "0.0292949062012336" "photosystem I reaction center" "TAIR-GO" "10" "8.73851395439042e-09" "1" "0.00948620978495097" "positive regulation of transcription" "TAIR-GO" "10" "1.04061391625566e-06" "1" "0.00948620978495097" "proton transport" "TAIR-GO" "10" "5.85817714881799e-05" "1" "0.0292949062012336" "regulation of transcription" "TAIR-GO" "10" "0" "1" "0" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to red light" "TAIR-GO" "10" "0" "1" "0" "response to stress" "TAIR-GO" "10" "2.74961943961422e-05" "1" "0.0182597201352783" "shade avoidance" "TAIR-GO" "10" "0" "1" "0" "sulfate reduction" "TAIR-GO" "10" "8.73851395439042e-09" "1" "0.00328607267060393" "sulfate reduction, APS pathway" "TAIR-GO" "10" "0" "1" "0" "glycosylglyceride biosynthesis" "AraCyc" "10" "0.00820542560972323" "1" "0.0622875234689772" "histidine biosynthesis" "AraCyc" "10" "0.0355845272947199" "1" "0.251027231379958" "histidine biosynthesis I" "AraCyc" "10" "0.0166946848235313" "1" "0.228132641186012" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "peptidoglycan biosynthesis" "AraCyc" "10" "1.9366842383457e-05" "1" "0.0798190211809618" "serine biosynthesis" "AraCyc" "10" "2.61031789220527e-05" "4" "1.46172109289133e-05" "sucrose degradation III" "AraCyc" "10" "0.0304769286946188" "1" "0.251027231379958" "tyrosine degradation" "AraCyc" "10" "0.000445245114399572" "1" "0.11857088914186" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "0.000366500501218803" "1" "0.0622875234689772" "C-compound, carbohydrate anabolism" "FunCat" "10" "0.000399676194545124" "1" "0.132762450225780" "Novobiocin biosynthesis" "KEGG" "10" "0.0011628129911296" "1" "0.078258244965568" "Peptidoglycan biosynthesis" "KEGG" "10" "3.07208235238233e-06" "1" "0.0121220620376716" "carotenid biosynthesis" "LitPath" "10" "0.0178560383359494" "2" "0.0168544561723447" "chlorophyll catabolism" "LitPath" "10" "3.72323577424928e-07" "1" "0.00793601916395676" "MEP (methylerythritol P) pathway, plastids" "LitPath" "10" "0.00130856863983023" "2" "0.00923837203307952" "oxylipin pathway" "LitPath" "10" "1.91988685595819e-09" "1" "0.00273697655323419" "calcium ion transport" "TAIR-GO" "9" "3.74600130722792e-08" "1" "0.00328607267060393" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "hyperosmotic salinity response" "TAIR-GO" "9" "0.00927136697961093" "1" "0.109255785324526" "nitrogen compound metabolism" "TAIR-GO" "9" "1.83313626352945e-06" "1" "0.00948620978495097" "response to abscisic acid stimulus" "TAIR-GO" "9" "0.0355685830239907" "1" "0.148840842727255" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "1.65096905148282e-07" "1" "0.0104511887034587" "glutamate degradation I" "AraCyc" "9" "0.00174904185210782" "1" "0.0798190211809618" "Membrane Transport" "KEGG" "9" "0.00918836832155595" "1" "0.188404807897470" "Other ion-coupled transporters" "KEGG" "9" "0.000383495929781352" "1" "0.0677854909081332" "Taurine and hypotaurine metabolism" "KEGG" "9" "1.46475368769006e-06" "1" "0.0121220620376716" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "Oxygen-evolving enhancer protein" "BioPath" "8" "0.00049115830672419" "2" "0.00273333306850832" "abscisic acid mediated signaling" "TAIR-GO" "8" "0.000320211335702665" "1" "0.0182597201352783" "carotenoid biosynthesis" "TAIR-GO" "8" "0.0325935823373802" "1" "0.0732440607067663" "photosynthetic electron transport" "TAIR-GO" "8" "0.00159527062178685" "1" "0.0423069010070427" "photosynthetic electron transport in photosystem I" "TAIR-GO" "8" "1.67811843906747e-05" "1" "0.00948620978495097" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "response to cold" "TAIR-GO" "8" "0.00790285176785454" "1" "0.0570356546574405" "response to salt stress" "TAIR-GO" "8" "8.72755247930391e-05" "1" "0.0182597201352783" "starch biosynthesis" "TAIR-GO" "8" "0.0274624800859149" "1" "0.0570356546574405" "glycine degradation I" "AraCyc" "8" "0.00074301299153321" "2" "0.0138988300350703" "N-Glycan biosynthesis" "KEGG" "8" "0.0150494737121492" "1" "0.136717461663358" "Streptomycin biosynthesis" "KEGG" "8" "0.0150494737121492" "1" "0.078258244965568" "photosystem II assembly" "TAIR-GO" "7" "3.10699307922250e-05" "1" "0.00948620978495097" "photosystem II stabilization" "TAIR-GO" "7" "4.70007504140362e-06" "1" "0.00328607267060393" "response to pest, pathogen or parasite" "TAIR-GO" "7" "2.79622718383233e-09" "1" "0.00328607267060393" "STRESS DATA SET" "quantDE" "2.725341" "maxDE" "11.25654" "STRESS DATA SET" "Lipid signaling" "AcylLipid" "49" "9.04176133910927e-23" "6" "0.000339897076883383" "jasmonic acid biosynthesis" "TAIR-GO" "39" "1.18979790619881e-33" "5" "1.46769659243728e-06" "jasmonic acid biosynthesis" "AraCyc" "39" "1.44996864015092e-38" "5" "1.29984912993981e-07" "lipoxygenase pathway" "AraCyc" "39" "1.24320713227781e-47" "5" "6.93024035913281e-09" "response to wounding" "TAIR-GO" "33" "3.6276210362201e-22" "4" "7.07803036053462e-05" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "28" "6.71501772318647e-05" "4" "0.0360084514146701" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "27" "2.2510133593937e-24" "3" "5.43003696316008e-05" "Photosystem I" "BioPath" "24" "9.90241946086202e-12" "4" "0.000362955625838048" "Photosystems " "BioPath" "24" "3.96929240770442e-06" "4" "0.00595147121839282" "Purine metabolism" "KEGG" "22" "9.15619215234237e-16" "3" "0.000591707149517282" "Glutathione metabolism" "BioPath" "20" "1.28535747242484e-07" "2" "0.0414503285096935" "Photosystem II" "BioPath" "20" "5.43443759660708e-11" "3" "0.00083186762839504" "Selenoamino acid metabolism" "KEGG" "20" "2.49461272234505e-17" "2" "0.000952979365531312" "Sulfur metabolism" "KEGG" "20" "6.20782141670718e-19" "2" "0.000374529010724609" "oxylipin pathway" "LitPath" "20" "0" "2" "0" "indoleacetic acid biosynthesis" "TAIR-GO" "18" "1.04266359304916e-20" "2" "8.84993657269714e-05" "IAA biosynthesis" "AraCyc" "18" "1.15914581342329e-14" "2" "0.000613380296689558" "IAA biosynthesis I" "AraCyc" "18" "1.11700919128856e-17" "2" "0.000241726119142541" "plant / fungal specific systemic sensing and response " "FunCat" "18" "1.76947653772326e-19" "2" "0.000123915980004379" "plant hormonal regulation" "FunCat" "18" "1.76947653772326e-19" "2" "0.000123915980004379" "response to jasmonic acid stimulus" "TAIR-GO" "17" "1.16825242597976e-16" "2" "0.000300585578041335" "Nitrogen metabolism" "KEGG" "15" "2.48234704940589e-10" "2" "0.00115395622076028" "Photosystem II reaction center" "BioPath" "12" "2.46824577499199e-12" "2" "0.000148701647890608" "Photosynthesis" "KEGG" "12" "4.36579289462959e-09" "2" "0.00126373909692906" "Chlorophyll biosynthesis and breakdown" "BioPath" "10" "0.000895097497252213" "1" "0.052589317420262" "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" "10" "0.0139868251714663" "1" "0.134793519162793" "starch metabolism" "BioPath" "10" "2.63384541234232e-05" "1" "0.0442376709639316" "chlorophyll catabolism" "TAIR-GO" "10" "2.72585803672894e-11" "1" "0.00132308827671920" "chloroplast envelope" "TAIR-GO" "10" "0" "1" "0" "galactolipid biosynthesis" "TAIR-GO" "10" "1.24031782450585e-08" "1" "0.00429140183192190" "glucosinolate biosynthesis" "TAIR-GO" "10" "1.89137298780774e-06" "1" "0.0115349506127978" "glycolipid biosynthesis" "TAIR-GO" "10" "5.1012740280236e-10" "1" "0.00261024084544393" "lipid biosynthesis" "TAIR-GO" "10" "1.24031782450585e-08" "1" "0.00429140183192190" "response to stress" "TAIR-GO" "10" "6.96208324359929e-10" "1" "0.00261024084544393" "sulfate assimilation" "TAIR-GO" "10" "3.53057081821458e-07" "1" "0.0115349506127978" "colanic acid building blocks biosynthesis" "AraCyc" "10" "0.00602708935886065" "1" "0.200141975088529" "dissimilatory sulfate reduction" "AraCyc" "10" "2.34166452743029e-08" "1" "0.00429810858293198" "dTDP-rhamnose biosynthesis" "AraCyc" "10" "0.000498646758834455" "1" "0.132051469479731" "galactose degradation I" "AraCyc" "10" "1.77260621021496e-12" "1" "0.00429810858293198" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "9.26075031801414e-09" "1" "0.0150805065832703" "glucose conversion" "AraCyc" "10" "0.000241159135715846" "1" "0.117243696307575" "glucosinolate biosynthesis from homomethionine" "AraCyc" "10" "2.11382040610134e-09" "1" "0.00208611450384678" "glycosylglyceride biosynthesis" "AraCyc" "10" "6.37339887185914e-08" "1" "0.00429810858293198" "lactose degradation IV" "AraCyc" "10" "1.77260621021496e-12" "1" "0.00429810858293198" "peptidoglycan biosynthesis" "AraCyc" "10" "3.05397425437005e-11" "1" "0.0056765245561733" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "sucrose biosynthesis" "AraCyc" "10" "8.64927678096597e-06" "1" "0.0343885994858505" "sucrose degradation III" "AraCyc" "10" "4.58154270910176e-07" "1" "0.0225524136809425" "sulfate assimilation III" "AraCyc" "10" "0.00515150498957199" "1" "0.0846549189695586" "trehalose biosynthesis II" "AraCyc" "10" "0.00566381060177069" "1" "0.189359204990739" "trehalose biosynthesis III" "AraCyc" "10" "9.3812237145155e-05" "1" "0.0802642098857851" "UDP-glucose conversion" "AraCyc" "10" "0.000192814977312429" "1" "0.112409334196517" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "1.03765140780855e-09" "1" "0.00429810858293198" "biogenesis of chloroplast" "FunCat" "10" "0.000312373282293328" "1" "0.0424583930664213" "C-compound, carbohydrate anabolism" "FunCat" "10" "9.93869965628296e-11" "1" "0.00453726056379525" "nitrogen and sulfur utilization " "FunCat" "10" "5.84672765540353e-11" "1" "0.00149731188491360" "secondary metabolism" "FunCat" "10" "6.54750228981273e-06" "1" "0.041197233468425" "Starch and sucrose metabolism" "KEGG" "10" "0.000738061014677505" "1" "0.0884507559905206" "Synthesis of membrane lipids in plastids" "AcylLipid" "10" "0.00262811195469571" "1" "0.0322124267876119" "chlorophyll and phytochromobilin metabolism" "LitPath" "10" "0.000419043613792810" "1" "0.0533988769487149" "chlorophyll catabolism" "LitPath" "10" "1.60794852212700e-14" "1" "0.000362774046346945" "Glucosinolate Metabolism" "LitPath" "10" "1.18697544448109e-05" "1" "0.0188022538346452" "response to pathogenic bacteria" "TAIR-GO" "9" "1.53378911592455e-08" "1" "0.00429140183192190" "Benzoate degradation via CoA ligation" "KEGG" "9" "0.000651387691632336" "1" "0.11801546370285" "Cyanoamino acid metabolism" "KEGG" "9" "3.17856503761513e-08" "1" "0.0117102943343867" "Tryptophan metabolism" "KEGG" "9" "4.91201608568037e-07" "1" "0.0211081165014555" "chlorophyll binding" "TAIR-GO" "8" "0.000615088566166539" "1" "0.0300295698558134" "nonphotochemical quenching" "TAIR-GO" "8" "6.07693699814673e-11" "1" "0.000447109445225977" "PSII associated light-harvesting complex II" "TAIR-GO" "8" "1.48865985815436e-11" "1" "0.000447109445225977" "abscisic acid biosynthesis" "TAIR-GO" "7" "0.000205105800666526" "1" "0.0180419647621884" "response to pest, pathogen or parasite" "TAIR-GO" "7" "5.93996112580465e-13" "1" "0.000447109445225977" "response to water deprivation" "TAIR-GO" "7" "0" "1" "0" "stress response" "FunCat" "7" "0" "1" "0" "HORMONE DATA SET" "quantDE" "1.812235" "maxDE" "8.6235074" "HORMONE DATA SET" "Phenylpropanoid Metabolism" "BioPath" "102" "2.30830034139845e-31" "16" "3.51498197596715e-07" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "86" "1.41266763520344e-59" "12" "2.18336356782696e-10" "Shikimate pathway" "LitPath" "86" "1.72239348276341e-37" "12" "1.99377927335429e-07" "tryptophan biosynthesis" "AraCyc" "72" "4.80576749923946e-76" "11" "1.04474564225567e-13" "tryptophan biosynthesis" "TAIR-GO" "68" "2.55661174585906e-62" "9" "3.20754540472557e-11" "Trp biosyntesis" "LitPath" "68" "3.30886875197714e-48" "9" "6.44616175233333e-09" "Lipid signaling" "AcylLipid" "63" "1.04911985653588e-26" "9" "0.000279277236113642" "response to wounding" "TAIR-GO" "62" "3.59995638196959e-44" "8" "2.16995034361080e-08" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "58" "6.87959930391533e-47" "7" "4.27164952436871e-08" "jasmonic acid biosynthesis" "TAIR-GO" "49" "7.97705261746015e-36" "7" "1.08339425294092e-07" "jasmonic acid biosynthesis" "AraCyc" "49" "1.99129781056407e-45" "7" "2.52157957965288e-09" "lipoxygenase pathway" "AraCyc" "49" "9.6501880508028e-58" "7" "3.20394713170376e-11" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "48" "0.000444457645013212" "6" "0.108508108416434" "response to pathogenic bacteria" "TAIR-GO" "48" "0" "7" "0" "Glutathione metabolism" "BioPath" "40" "8.94910793819904e-12" "4" "0.0254382716245277" "response to jasmonic acid stimulus" "TAIR-GO" "32" "6.68959148215812e-33" "4" "1.06875506675756e-06" "Purine metabolism" "KEGG" "32" "1.66125112813247e-16" "4" "0.000914579580064718" "Selenoamino acid metabolism" "KEGG" "30" "4.85847869377828e-20" "3" "0.000516144101996646" "Sulfur metabolism" "KEGG" "30" "2.11570840910307e-22" "3" "0.000148610072357604" "sulfate assimilation III" "AraCyc" "29" "2.68796069440366e-12" "3" "0.00698790782073947" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "29" "8.98998731414143e-23" "4" "7.45525591896674e-05" "alanine biosynthesis II" "AraCyc" "24" "6.87433970807325e-16" "4" "0.000237735267070668" "phenylalanine biosynthesis II" "AraCyc" "24" "5.9580419888793e-18" "4" "0.000124615977903332" "amino acid metabolism" "FunCat" "21" "4.87150186492047e-06" "4" "0.00527694449045775" "Chlorophyll biosynthesis and breakdown" "BioPath" "20" "4.92174300481123e-05" "2" "0.0454517410164207" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "20" "0.0326920129665165" "2" "0.199337446184698" "tryptophan catabolism" "TAIR-GO" "20" "0" "2" "0" "glucosinolate biosynthesis from tryptophan" "AraCyc" "20" "1.90745545774873e-26" "2" "1.26423281506701e-05" "IAA biosynthesis" "AraCyc" "20" "9.55491494475685e-14" "2" "0.00238274604338993" "IAA biosynthesis I" "AraCyc" "20" "4.64916606063941e-17" "2" "0.000957763236353837" "gamma-Hexachlorocyclohexane degradation" "KEGG" "20" "2.2051238838812e-15" "2" "0.00119453579926395" "Glucosinolate Metabolism" "LitPath" "20" "0.0253878108251134" "2" "0.118817615806982" "oxylipin pathway" "LitPath" "20" "0" "2" "0" "tyrosine biosynthesis I" "AraCyc" "18" "3.13406604669157e-17" "3" "3.31710035888038e-05" "nucleotide metabolism" "FunCat" "18" "0" "3" "0" "defense response" "TAIR-GO" "17" "5.52297593884029e-05" "3" "0.00490959651356095" "methionine biosynthesis II" "AraCyc" "15" "5.93505997948022e-10" "2" "0.00304505387153762" "stress response" "FunCat" "15" "0" "3" "0" "biosynthesis of proto- and siroheme" "AraCyc" "14" "0.000690720164039851" "2" "0.0708453176421517" "chlorophyll biosynthesis" "AraCyc" "14" "0.00803004589938634" "2" "0.122568982450664" "lignin biosynthesis" "AraCyc" "14" "0.00460004189342923" "3" "0.0190544948743885" "flavonoid biosynthesis" "AraCyc" "12" "4.17983857548251e-05" "2" "0.0245589835750657" "Fructose and mannose metabolism" "KEGG" "12" "0.000839090417464245" "2" "0.0205449039683711" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "12" "0.0094499468190865" "2" "0.133109639191599" "sterol biosynthesis" "BioPath" "10" "0.0410855153389512" "1" "0.132111817096540" "anthranilate synthase complex" "TAIR-GO" "10" "3.419926715298e-11" "1" "0.00129043782971725" "aromatic amino acid family biosynthesis" "TAIR-GO" "10" "0.00367329165077691" "1" "0.0886998563820096" "aromatic amino acid family biosynthesis, anthranilate pathway" "TAIR-GO" "10" "0" "1" "0" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "10" "0.000718688507665656" "1" "0.0673672103926058" "chlorophyll catabolism" "TAIR-GO" "10" "7.79901728643022e-09" "1" "0.00378050246390903" "chloroplast envelope" "TAIR-GO" "10" "0" "1" "0" "galactolipid biosynthesis" "TAIR-GO" "10" "2.62800033033367e-06" "1" "0.0120196819369716" "glycolipid biosynthesis" "TAIR-GO" "10" "1.29391680555262e-07" "1" "0.0073841087572177" "lipid biosynthesis" "TAIR-GO" "10" "2.62800033033367e-06" "1" "0.0120196819369716" "porphyrin biosynthesis" "TAIR-GO" "10" "0.000718688507665656" "1" "0.0777988221233655" "response to biotic stimulus" "TAIR-GO" "10" "0" "1" "0" "response to stress" "TAIR-GO" "10" "1.73956347685031e-07" "1" "0.0073841087572177" "sterol biosynthesis" "TAIR-GO" "10" "0.0498937618326715" "1" "0.161539840490976" "sulfate assimilation" "TAIR-GO" "10" "5.72192249443278e-05" "1" "0.0313658363758559" "cysteine biosynthesis I" "AraCyc" "10" "0.0148458432862584" "1" "0.233575404542859" "dissimilatory sulfate reduction" "AraCyc" "10" "1.05000681358205e-06" "1" "0.0106617942155644" "glycosylglyceride biosynthesis" "AraCyc" "10" "2.72133880500169e-06" "1" "0.0106617942155644" "sterol biosynthesis" "AraCyc" "10" "0.00413624787706279" "1" "0.0791913314308966" "biogenesis of chloroplast" "FunCat" "10" "0.00393503409487703" "1" "0.148909634357465" "nitrogen and sulfur utilization " "FunCat" "10" "1.66804530994355e-09" "1" "0.00632724769898452" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.000206675605551202" "1" "0.0401908815829893" "Fatty acid metabolism" "KEGG" "10" "0.00440356178574113" "1" "0.0698971449011255" "Fluorene degradation" "KEGG" "10" "2.15733861215547e-06" "1" "0.0152585810320671" "Porphyrin and chlorophyll metabolism" "KEGG" "10" "0.000955541115894653" "1" "0.0462688075202077" "Tryptophan metabolism" "KEGG" "10" "8.93179765600311e-05" "1" "0.0698971449011255" "Synthesis of membrane lipids in plastids" "AcylLipid" "10" "0.0244761657614491" "1" "0.0915084651892574" "chlorophyll catabolism" "LitPath" "10" "3.66383795827278e-06" "1" "0.0118194956936368" "Phe/Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "hyperosmotic salinity response" "TAIR-GO" "9" "0.000190509145543317" "1" "0.0481123703321383" "response to abscisic acid stimulus" "TAIR-GO" "9" "0.00104096619727100" "1" "0.0673672103926058" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "homocysteine and cysteine interconversion" "AraCyc" "9" "5.00970816116326e-06" "1" "0.0218204203815481" "transport " "FunCat" "9" "9.09854401081253e-16" "2" "1.29923225239711e-06" "transport facilitation" "FunCat" "9" "0" "2" "1.29923225239711e-06" "Glutathione metabolism" "KEGG" "9" "0.0112488906103116" "1" "0.100627547199637" "hemicellulose biosynthesis" "BioPath" "8" "0.00554342640293166" "1" "0.0569220032720843" "phenylalanine degradation I" "AraCyc" "8" "0.0151141804339609" "2" "0.0245589835750657" "Glycerolipid metabolism" "KEGG" "8" "0.0136723344484744" "1" "0.0663160118720943" "Phe biosynthesis" "LitPath" "8" "3.91291029818775e-06" "2" "0.00443590344805765" "abscisic acid biosynthesis" "TAIR-GO" "7" "0.00615833646269511" "1" "0.0481123703321383" "histone acetylation" "TAIR-GO" "7" "0" "1" "0" "response to pest, pathogen or parasite" "TAIR-GO" "7" "4.34336914556003e-11" "1" "0.00129043782971725" "response to water deprivation" "TAIR-GO" "7" "0" "1" "0" "salicylic acid biosynthesis" "TAIR-GO" "7" "8.89315327874584e-08" "1" "0.00129043782971725" "transcription factor TFIID complex" "TAIR-GO" "7" "0" "1" "0" "transport ATPases" "FunCat" "7" "0.000391390230120236" "1" "0.049260553259968" "Basal transcription factors" "KEGG" "7" "0.00115837169455592" "1" "0.0735409035377929" "MUTANT DATA SET" "quantDE" "2.435466" "maxDE" "7.96429251" "MUTANT DATA SET" "Phenylpropanoid Metabolism" "BioPath" "78" "4.93415292626214e-37" "10" "1.68827681597410e-06" "tryptophan biosynthesis" "AraCyc" "70" "3.22318884881845e-100" "10" "1.36287575169034e-17" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "68" "1.82119280431777e-60" "9" "2.00353676443819e-10" "tryptophan biosynthesis" "TAIR-GO" "68" "1.68639617846683e-76" "9" "1.88595494295920e-13" "Shikimate pathway" "LitPath" "68" "4.26456259593027e-36" "9" "4.28550304576068e-07" "Trp biosyntesis" "LitPath" "68" "2.16596664272139e-63" "9" "1.64826563710711e-11" "response to pathogenic bacteria" "TAIR-GO" "48" "0" "7" "0" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "42" "7.18893692771103e-44" "5" "4.3745439961771e-08" "Glucosinolate Metabolism" "LitPath" "40" "2.61503114859384e-18" "4" "0.000446049440611333" "response to wounding" "TAIR-GO" "39" "2.40841480795365e-27" "5" "5.10496615032978e-06" "jasmonic acid biosynthesis" "AraCyc" "26" "2.74022733561316e-26" "4" "2.23293785967761e-07" "lipoxygenase pathway" "AraCyc" "26" "7.54264868052734e-32" "4" "2.13805945802479e-08" "Lipid signaling" "AcylLipid" "26" "2.32847646040859e-08" "4" "0.0261793179527221" "jasmonic acid biosynthesis" "TAIR-GO" "22" "3.06643981915770e-13" "3" "0.000666667470551526" "tryptophan catabolism" "TAIR-GO" "20" "0" "2" "0" "glucosinolate biosynthesis from tryptophan" "AraCyc" "20" "5.52567751311423e-34" "2" "5.14581349333471e-07" "IAA biosynthesis" "AraCyc" "20" "7.16765874519898e-21" "2" "0.000107594237795342" "IAA biosynthesis I" "AraCyc" "20" "2.32032134850107e-24" "2" "4.17834384599448e-05" "response to jasmonic acid stimulus" "TAIR-GO" "19" "1.10590319500694e-18" "2" "0.000345699488109077" "nucleotide metabolism" "FunCat" "16" "0" "2" "0" "amino acid metabolism" "FunCat" "15" "4.15585823586455e-08" "2" "0.0097908548594022" "Benzoate degradation via CoA ligation" "KEGG" "11" "2.59848528487474e-05" "2" "0.00993748446247137" "Inositol phosphate metabolism" "KEGG" "11" "6.69567563839824e-05" "2" "0.0125681939585926" "Nicotinate and nicotinamide metabolism" "KEGG" "11" "6.37406931469907e-06" "2" "0.00792925527538763" "Chlorophyll biosynthesis and breakdown" "BioPath" "10" "0.00284432791015780" "1" "0.055786796680851" "Flavonoid and anthocyanin metabolism" "BioPath" "10" "0.000237319686594508" "1" "0.134172465048197" "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" "10" "0.0359501321973339" "1" "0.142183333331900" "anthranilate synthase complex" "TAIR-GO" "10" "2.66884036179282e-13" "1" "0.00049124916978371" "chlorophyll catabolism" "TAIR-GO" "10" "6.94300661899232e-11" "1" "0.00145270470962557" "chloroplast envelope" "TAIR-GO" "10" "0" "1" "0" "galactolipid biosynthesis" "TAIR-GO" "10" "3.03962079587451e-08" "1" "0.00470534708244814" "glycolipid biosynthesis" "TAIR-GO" "10" "1.27940597629360e-09" "1" "0.00286398409132200" "lipid biosynthesis" "TAIR-GO" "10" "3.03962079587451e-08" "1" "0.00470534708244814" "response to stress" "TAIR-GO" "10" "1.74273220539281e-09" "1" "0.00286398409132200" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "1.52555441452419e-12" "1" "0.000393384149565995" "glycosylglyceride biosynthesis" "AraCyc" "10" "7.44289617613921e-10" "1" "0.00135559537456488" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "10" "1.53361027856152e-08" "1" "0.0139101664088572" "Ascorbate and aldarate metabolism" "KEGG" "10" "9.88212037756656e-08" "1" "0.00700908750483925" "Fluorene degradation" "KEGG" "10" "5.79127767986687e-10" "1" "0.00252986498628408" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "2.78788906711466e-09" "1" "0.00325665095274107" "Purine metabolism" "KEGG" "10" "4.05180009529376e-05" "1" "0.0371491043189756" "Selenoamino acid metabolism" "KEGG" "10" "7.84546345269863e-07" "1" "0.0100081980786757" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "10" "0.000105818378008525" "1" "0.0904389252628913" "Sulfur metabolism" "KEGG" "10" "1.33708277298513e-07" "1" "0.00544702894988083" "Synthesis of membrane lipids in plastids" "AcylLipid" "10" "0.000109211741310516" "1" "0.0322124267876119" "chlorophyll catabolism" "LitPath" "10" "3.58630034676756e-08" "1" "0.00413568958323511" "oxylipin pathway" "LitPath" "10" "1.65437701565826e-10" "1" "0.00141193234889066" "hyperosmotic salinity response" "TAIR-GO" "9" "4.25089388896597e-06" "1" "0.0197152965514516" "N-terminal protein myristoylation" "TAIR-GO" "9" "4.78286345023807e-05" "1" "0.0237564305600682" "response to abscisic acid stimulus" "TAIR-GO" "9" "2.80925198468377e-05" "1" "0.0281060322773344" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "homocysteine and cysteine interconversion" "AraCyc" "9" "2.79039161269507e-09" "1" "0.00286007876977143" "methionine biosynthesis II" "AraCyc" "9" "5.81627736773219e-08" "1" "0.00488117493437630" "sulfate assimilation III" "AraCyc" "9" "0.000672515748323157" "1" "0.0298132569870011"