"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "lipoxygenase pathway" "AraCyc" "80" "9" "" "" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "66" "8" "" "" "oxylipin pathway" "LitPath" "60" "6" "" "" "chlorophyll catabolism" "TAIR-GO" "50" "5" "" "" "chlorophyll catabolism" "LitPath" "50" "5" "" "" "ORGAN DATA SET" "quantDE" "5.206616" "maxDE" "6.8295956" "ORGAN DATA SET" "Photosystems " "BioPath" "351" "3.18950986121156e-174" "50" "1.34724578828193e-28" "additional photosystem II components" "BioPath" "150" "8.21369679976926e-78" "20" "2.23405254429178e-13" "Chlorophyll a/b binding proteins" "BioPath" "138" "5.98699932263239e-122" "17" "5.22171260010152e-19" "Photosynthesis" "KEGG" "133" "2.67009139297834e-165" "21" "1.05380712154552e-29" "Photosystem I" "BioPath" "123" "7.61528480859153e-37" "20" "1.8875956983664e-09" "biogenesis of chloroplast" "FunCat" "93" "5.78578962218872e-33" "15" "5.20922844473666e-09" "photosynthesis" "FunCat" "90" "2.30441595224222e-45" "13" "3.12443018306963e-09" "Photosystem II" "BioPath" "69" "4.48890210615123e-14" "9" "0.00115186002722769" "photosystem I" "TAIR-GO" "67" "0" "8" "0" "chlorophyll binding" "TAIR-GO" "60" "5.46512783753619e-44" "7" "1.88002419127196e-07" "transport " "FunCat" "58" "0" "9" "0" "photosystem II" "TAIR-GO" "51" "0" "6" "0" "glycolysis and gluconeogenesis" "FunCat" "51" "0.00427841694222361" "7" "0.161713037185443" "Carbon fixation" "KEGG" "51" "3.22708021698366e-21" "6" "0.000653217564588824" "photosynthesis" "TAIR-GO" "50" "1.23453147720482e-24" "6" "0.00012516024484568" "light harvesting complex" "BioPath" "48" "0" "6" "0" "respiration" "FunCat" "46" "3.84683641259701e-29" "7" "7.51756442772636e-08" "aerobic respiration" "FunCat" "40" "8.07781828386284e-23" "5" "2.87191378311784e-05" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "36" "0" "4" "0" "energy" "FunCat" "34" "0" "5" "0" "transport facilitation" "FunCat" "32" "0" "5" "0" "acetate fermentation" "AraCyc" "30" "1.89002186122233e-05" "4" "0.125032343009792" "fructose degradation (anaerobic)" "AraCyc" "30" "5.79750186472002e-06" "4" "0.0980543532995728" "glycolysis IV" "AraCyc" "30" "6.76498578708743e-06" "4" "0.103190782225601" "sorbitol fermentation" "AraCyc" "30" "2.17308830814079e-05" "4" "0.113857026616564" "Porphyrin and chlorophyll metabolism" "KEGG" "30" "7.29810063962649e-14" "4" "0.000319005584071322" "chlorophyll and phytochromobilin metabolism" "LitPath" "30" "1.46700600110243e-10" "3" "0.00704722163911669" "photosystem I reaction center" "BioPath" "28" "5.05710518485260e-19" "6" "9.27787938639615e-07" "photosynthesis light harvesting" "TAIR-GO" "28" "6.55077480280928e-19" "3" "0.000844628752732351" "Pentose phosphate pathway" "KEGG" "28" "2.64535238430752e-12" "4" "0.00229508420849811" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "27" "0.000913375376746312" "3" "0.114141421042071" "photosystem I subunit precursor" "BioPath" "26" "0" "5" "0" "pentose-phosphate shunt" "TAIR-GO" "26" "7.37685777262865e-13" "3" "0.00490340389990009" "Calvin cycle" "AraCyc" "26" "1.28588562163529e-07" "3" "0.0590794593471342" "Oxygen-evolving enhancer protein" "BioPath" "24" "2.18012810953659e-18" "3" "0.000240077832323762" "electron transport" "TAIR-GO" "22" "4.87600821526531e-05" "3" "0.0325014155616155" "photosynthetic electron transport" "TAIR-GO" "22" "4.08239938714461e-16" "3" "0.000199865337798454" "photorespiration" "AraCyc" "22" "5.13730452429941e-08" "6" "0.000268138988835778" "mRNA synthesis " "FunCat" "21" "2.05218987572437e-06" "3" "0.0320702201958269" "RNA synthesis " "FunCat" "21" "2.05218987572437e-06" "3" "0.0320702201958269" "transcription" "FunCat" "21" "2.05631751021102e-13" "3" "0.00289468319739864" "transcriptional control" "FunCat" "21" "1.06258071057697e-10" "3" "0.00153740145010632" "Cytochrome b6/f complex" "BioPath" "20" "2.98304576705752e-08" "2" "0.0348761987746466" "Plastocyanin" "BioPath" "20" "0" "2" "0" "photosynthetic water oxidation" "TAIR-GO" "20" "0" "2" "0" "fatty acid oxidation pathway" "AraCyc" "20" "2.57609268587110e-06" "2" "0.035793470615114" "gluconeogenesis" "AraCyc" "20" "0.00349558669846296" "3" "0.0970335551668337" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "20" "0" "3" "0" "pentose-phosphate pathway " "FunCat" "20" "5.67212470777131e-06" "2" "0.0675803281706993" "Biosynthesis of steroids" "KEGG" "20" "0.00268210694006888" "2" "0.0890640703501445" "Glycolysis / Gluconeogenesis" "KEGG" "20" "0.0133464177472245" "3" "0.101289336023880" "Nitrogen metabolism" "KEGG" "20" "2.70788926453447e-05" "3" "0.0058562111085517" "Glycan Biosynthesis and Metabolism" "KEGG" "19" "0.00101777961311735" "3" "0.0566184152915344" "Carotenoid biosynthesis" "BioPath" "18" "0.00236147186006093" "2" "0.0603610323551738" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "photosynthesis light harvesting in photosystem I" "TAIR-GO" "18" "1.28607036490381e-10" "2" "0.0069778055218333" "carotenoid biosynthesis" "AraCyc" "18" "7.45782697970328e-08" "2" "0.00573271758091857" "transported compounds (substrates)" "FunCat" "18" "0" "3" "0" "carotenid biosynthesis" "LitPath" "18" "3.68439513244419e-11" "2" "0.00190565916998297" "Carotenoid and abscisic acid metabolism" "LitPath" "18" "1.96674197252741e-07" "2" "0.0131327508114779" "photosystem II assembly" "TAIR-GO" "17" "1.23085460856775e-18" "2" "0.000240410491382891" "photosystem II stabilization" "TAIR-GO" "17" "0" "2" "0" "lipoxygenase pathway" "AraCyc" "17" "4.05230548693455e-08" "2" "0.0099221854108641" "Early light-inducible proteins" "BioPath" "16" "4.0361595772124e-06" "2" "0.0165130540787971" "photosystem II type II chlorophyll a /b binding protein" "BioPath" "16" "1.3596974631445e-09" "2" "0.00229110987804436" "Transcription (chloroplast)" "BioPath" "16" "5.97346564963792e-05" "2" "0.0165130540787971" "photorespiration" "TAIR-GO" "16" "1.25529915378079e-11" "3" "7.00186070318204e-05" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "response to high light intensity" "TAIR-GO" "16" "2.85602411881881e-14" "2" "0.000240410491382891" "response to jasmonic acid stimulus" "TAIR-GO" "16" "9.16225152388392e-08" "2" "0.0069778055218333" "transcription initiation" "TAIR-GO" "16" "1.29759917523096e-06" "2" "0.0106577115832939" "glycine degradation I" "AraCyc" "16" "1.49339538274636e-13" "3" "0.000242338137799343" "mannitol degradation" "AraCyc" "16" "3.9845764386889e-06" "2" "0.0717609212034158" "sorbitol degradation" "AraCyc" "16" "7.02284346716986e-06" "2" "0.0788871404485059" "Fructose and mannose metabolism" "KEGG" "16" "0.0025875289409546" "2" "0.0890640703501445" "ATP synthase components" "BioPath" "14" "0.00365908364010811" "2" "0.0467600500423081" "photosystem II antenna complex" "TAIR-GO" "14" "3.98877177456511e-14" "2" "0.000240410491382891" "ascorbate glutathione cycle" "AraCyc" "14" "5.21368892081202e-05" "2" "0.0225256320685346" "glyceraldehyde 3-phosphate degradation" "AraCyc" "14" "0.000207032448854506" "2" "0.0584404460676664" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "2.94987178244795e-16" "2" "9.27387813101425e-05" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "14" "0.0398788672213870" "2" "0.0675803281706993" "electron transport and membrane-associated energy conservation " "FunCat" "14" "3.76378812807345e-08" "2" "0.00635700654796605" "ATP synthesis" "KEGG" "14" "0.000872092193515338" "2" "0.0638918335678133" "response to abscisic acid stimulus" "TAIR-GO" "13" "0.00107395408521213" "3" "0.00490340389990009" "dTDP-rhamnose biosynthesis" "AraCyc" "13" "0.0415045268213445" "3" "0.0852278348135877" "galactose degradation I" "AraCyc" "13" "8.02931292442144e-12" "3" "7.15982666029832e-05" "glucose conversion" "AraCyc" "13" "0.0222199119281542" "3" "0.0689454385193705" "lactose degradation IV" "AraCyc" "13" "8.02931292442144e-12" "3" "7.15982666029832e-05" "UDP-glucose conversion" "AraCyc" "13" "0.0182124504483900" "3" "0.0639117257939028" "protein biosynthesis" "TAIR-GO" "12" "0" "2" "0" "formaldehyde assimilation I (serine pathway)" "AraCyc" "12" "0.0412320651920358" "2" "0.136389790033000" "oxidative branch of the pentose phosphate pathway" "AraCyc" "12" "1.36218052236328e-06" "2" "0.0125340026919938" "accessory proteins of photosynthetic electron transport " "FunCat" "12" "0" "2" "0" "C-compound, carbohydrate anabolism" "FunCat" "12" "0.00178626882682042" "2" "0.0525750368031853" "Ferredoxin" "BioPath" "10" "0.00351737453827483" "2" "0.0348761987746466" "psbP family of thylakoid proteins" "BioPath" "10" "7.58590443530654e-06" "3" "0.000672057569947198" "Regulatory enzymes" "BioPath" "10" "9.3788014244391e-05" "1" "0.0204757064976922" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "10" "0.0223878247741681" "1" "0.0862514706850732" "aging" "TAIR-GO" "10" "0.00244368388908149" "1" "0.0850668313935435" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "9.56647791217842e-05" "1" "0.0343713933886885" "carotene biosynthesis" "TAIR-GO" "10" "1.17673242120933e-06" "1" "0.0112078973709991" "chlorophyll catabolism" "TAIR-GO" "10" "2.6323966198806e-06" "1" "0.0112078973709991" "chloroplast ATP synthase complex" "TAIR-GO" "10" "1.54094205911283e-08" "1" "0.00389623945125494" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "2.63019153997499e-05" "1" "0.0214983098054961" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "2.6323966198806e-06" "1" "0.0112078973709991" "cytochrome b6f complex" "TAIR-GO" "10" "9.56647791217842e-05" "1" "0.0494683383212246" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "fatty acid oxidation" "TAIR-GO" "10" "0" "1" "0" "glucose metabolism" "TAIR-GO" "10" "9.56647791217842e-05" "1" "0.0343713933886885" "pentose-phosphate shunt, oxidative branch" "TAIR-GO" "10" "9.56647791217842e-05" "1" "0.0343713933886885" "photosynthesis light harvesting in photosystem II" "TAIR-GO" "10" "1.97042508859991e-05" "1" "0.0343713933886885" "photosynthesis, dark reaction" "TAIR-GO" "10" "0" "1" "0" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "4.92134641847643e-11" "1" "0.00389623945125494" "proton transport" "TAIR-GO" "10" "9.56647791217842e-05" "1" "0.0343713933886885" "response to chemical substance" "TAIR-GO" "10" "0" "1" "0" "response to stress" "TAIR-GO" "10" "4.53688314729852e-05" "1" "0.0214983098054961" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "ammonia assimilation cycle" "AraCyc" "10" "0.000530407808243867" "1" "0.0455826032465481" "cysteine biosynthesis II" "AraCyc" "10" "0.00165272752640131" "4" "0.00162209573320986" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "8.04508675655417e-05" "1" "0.0892403318262821" "glutamine biosynthesis I" "AraCyc" "10" "0.000177519250121777" "1" "0.0279868462114310" "isoleucine degradation III" "AraCyc" "10" "0.000410520697811877" "1" "0.0774393581133147" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "10" "5.96608469201384e-06" "1" "0.0205116197727277" "leucine degradation II" "AraCyc" "10" "0.000410520697811877" "1" "0.0774393581133147" "nitrate assimilation pathway" "AraCyc" "10" "0.00296503992213512" "1" "0.0555450746629555" "octane oxidation" "AraCyc" "10" "0.0074519252128235" "1" "0.0555450746629555" "peptidoglycan biosynthesis" "AraCyc" "10" "4.85351131369816e-07" "1" "0.0363710021736228" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "10" "4.7561258305133e-09" "1" "0.0140319850629464" "serine biosynthesis" "AraCyc" "10" "6.68305247611366e-07" "4" "1.68455308366268e-06" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "starch degradation" "AraCyc" "10" "0.00245762547697010" "2" "0.0188315951458489" "sucrose biosynthesis" "AraCyc" "10" "0.0181570361327181" "1" "0.182655448527592" "sucrose degradation III" "AraCyc" "10" "0.00202283470122456" "1" "0.12735678006371" "superpathway of serine and glycine biosynthesis II" "AraCyc" "10" "0.00133986682806098" "4" "0.00131026429864523" "thiamine biosynthesis" "AraCyc" "10" "7.95077335829189e-08" "1" "0.0205116197727277" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "1.18516866120285e-05" "1" "0.0279868462114310" "electron / hydrogen transport " "FunCat" "10" "3.79871443367187e-06" "1" "0.0274140555918138" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "Benzoate degradation via hydroxylation" "KEGG" "10" "1.82263523148658e-05" "1" "0.0210827615119737" "Bile acid biosynthesis" "KEGG" "10" "0.000162159832852882" "1" "0.0514096694639741" "Fatty acid biosynthesis (path 2)" "KEGG" "10" "1.69429997116773e-06" "1" "0.0210827615119737" "Peptidoglycan biosynthesis" "KEGG" "10" "3.47950588472728e-08" "1" "0.00505144718507369" "RNA polymerase" "KEGG" "10" "0.0231579959444409" "1" "0.236045362614923" "Valine, leucine and isoleucine degradation" "KEGG" "10" "0.0285384635038359" "1" "0.193314678800851" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "10" "0.00803626361008784" "1" "0.201121471593159" "chlorophyll biosynthesis" "LitPath" "10" "8.45168374213388e-05" "1" "0.0191708223427874" "chlorophyll catabolism" "LitPath" "10" "6.15088388977187e-10" "1" "0.0017463361967854" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "10" "0.00858924862226958" "1" "0.0860462267914784" "MEP (methylerythritol P) pathway, plastids" "LitPath" "10" "5.36276620361875e-06" "1" "0.0191708223427874" "oxylipin pathway" "LitPath" "10" "2.47324608093568e-12" "1" "0.000590839382920397" "phytochromobilin biosynthesis" "LitPath" "10" "3.36308046292251e-06" "1" "0.0115192904263240" "calcium ion transport" "TAIR-GO" "9" "6.27748203854501e-08" "1" "0.00389623945125494" "carbohydrate biosynthesis" "TAIR-GO" "9" "0" "1" "0" "hyperosmotic salinity response" "TAIR-GO" "9" "0.0132561376291289" "1" "0.12605828835117" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "response to water deprivation" "TAIR-GO" "9" "0" "2" "0" "starch biosynthesis" "TAIR-GO" "9" "0.0146858724454955" "1" "0.0664645514409811" "sucrose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "homocysteine and cysteine interconversion" "AraCyc" "9" "0.000507906378848025" "1" "0.0555450746629555" "methionine biosynthesis II" "AraCyc" "9" "0.0053237412657732" "1" "0.0892403318262821" "Membrane Transport" "KEGG" "9" "0.000341534082100576" "1" "0.0905855133225188" "Other ion-coupled transporters" "KEGG" "9" "8.93904935109665e-06" "1" "0.0300096394462202" "carotenoid biosynthesis" "TAIR-GO" "8" "0.0437369869220449" "1" "0.0850668313935435" "photosynthetic electron transport in photosystem I" "TAIR-GO" "8" "2.59106352656571e-05" "1" "0.0112078973709991" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "wax biosynthesis" "TAIR-GO" "8" "0.0124612017661903" "1" "0.0664645514409811" "C-compound and carbohydrate transport " "FunCat" "8" "1.49103598099624e-08" "2" "0.000358532358839564" "N-Glycan biosynthesis" "KEGG" "8" "0.000789975908544588" "1" "0.0636356686804619" "photomorphogenesis" "TAIR-GO" "7" "1.19069948896946e-05" "1" "0.0112078973709991" "response to pest, pathogen or parasite" "TAIR-GO" "7" "4.30552883405262e-09" "1" "0.00389623945125494" "stress response" "FunCat" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "2.436391" "maxDE" "9.115862" "STRESS DATA SET" "Lipid signaling" "AcylLipid" "43" "2.26317959195295e-25" "5" "0.00123636678073901" "response to wounding" "TAIR-GO" "36" "2.85192454113551e-33" "4" "9.05858534858026e-06" "jasmonic acid biosynthesis" "TAIR-GO" "33" "2.34101013476223e-33" "4" "4.11996898602902e-06" "jasmonic acid biosynthesis" "AraCyc" "33" "2.15627372517742e-43" "4" "3.03761285803971e-07" "lipoxygenase pathway" "AraCyc" "33" "6.8460447037527e-51" "4" "2.91588075990804e-08" "response to jasmonic acid stimulus" "TAIR-GO" "26" "4.55887006500607e-36" "3" "1.12802217015926e-06" "oxylipin pathway" "LitPath" "20" "0" "2" "0" "Phenylpropanoid Metabolism" "BioPath" "18" "6.56195650297477e-06" "2" "0.0574679043773104" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "17" "1.80161156246884e-15" "2" "0.000696271444299002" "amino acid metabolism" "FunCat" "15" "8.08503572491267e-07" "3" "0.00087319469385162" "response to abscisic acid stimulus" "TAIR-GO" "11" "1.14085774941917e-09" "2" "0.000525153306380106" "Chlorophyll biosynthesis and breakdown" "BioPath" "10" "8.45169020799731e-07" "1" "0.0124474153959623" "Glucosyltransferases for benzoic acids" "BioPath" "10" "4.22673986751821e-10" "1" "0.00195319736574836" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "10" "0.00218143892735176" "1" "0.0690345022349854" "starch metabolism" "BioPath" "10" "1.41286919025297e-08" "1" "0.0103481284233773" "chlorophyll catabolism" "TAIR-GO" "10" "1.41977803615190e-13" "1" "0.000583670764692331" "response to stress" "TAIR-GO" "10" "3.90058638704759e-12" "1" "0.00115703093657462" "starch catabolism" "TAIR-GO" "10" "3.82938485953674e-15" "1" "0.000583670764692331" "starch degradation" "AraCyc" "10" "8.34291888160834e-11" "1" "0.00729682695802858" "C-compound and carbohydrate utilization " "FunCat" "10" "3.36223634241904e-23" "1" "1.8750631030852e-05" "energy" "FunCat" "10" "2.88685245173715e-21" "1" "5.61073795585996e-05" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "Starch and sucrose metabolism" "KEGG" "10" "7.19998046240943e-09" "1" "0.0327016711169908" "chlorophyll and phytochromobilin metabolism" "LitPath" "10" "4.13899406407389e-05" "1" "0.0209068727824792" "chlorophyll catabolism" "LitPath" "10" "8.6759093862801e-16" "1" "0.000129947188115150" "hyperosmotic salinity response" "TAIR-GO" "9" "2.2404188647868e-08" "1" "0.00822903536718457" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "homocysteine and cysteine interconversion" "AraCyc" "9" "4.36977593047337e-11" "1" "0.003214392051522" "methionine biosynthesis II" "AraCyc" "9" "9.89335161665858e-10" "1" "0.00548039981044546" "sulfate assimilation III" "AraCyc" "9" "2.05749560124125e-05" "1" "0.0332545815546815" "Flavonoid and anthocyanin metabolism" "BioPath" "8" "3.85914790021839e-06" "1" "0.0327652822845532" "response to dessication" "TAIR-GO" "8" "1.98505355156462e-11" "2" "1.03105928100454e-05" "cellulose biosynthesis" "AraCyc" "8" "6.72338445951065e-05" "2" "0.00639062703064054" "abscisic acid biosynthesis" "TAIR-GO" "7" "6.70617432898363e-06" "1" "0.00822903536718457" "response to pest, pathogen or parasite" "TAIR-GO" "7" "1.19814468253218e-14" "1" "0.000196291951562624" "response to water deprivation" "TAIR-GO" "7" "0" "1" "0" "stress response" "FunCat" "7" "0" "1" "0" "HORMONE DATA SET" "quantDE" "2.225728" "maxDE" "5.5420168" "HORMONE DATA SET" "Lipid signaling" "AcylLipid" "34" "7.72431038725543e-19" "4" "0.012270854164962" "secondary metabolism" "FunCat" "24" "6.00879445512718e-23" "6" "1.32427709100853e-07" "jasmonic acid biosynthesis" "TAIR-GO" "20" "1.03863526716087e-18" "2" "0.000572880035735575" "response to wounding" "TAIR-GO" "20" "2.39499065276838e-16" "2" "0.000894867776207958" "jasmonic acid biosynthesis" "AraCyc" "20" "1.13794153177947e-19" "2" "0.00084832413487688" "lipoxygenase pathway" "AraCyc" "20" "8.25759802554761e-24" "2" "0.000239270855878402" "oxylipin pathway" "LitPath" "20" "0" "2" "0" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "18" "0.00141727335389885" "3" "0.0446694384860388" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "16" "6.06854840807599e-07" "2" "0.0142597413498915" "auxin metabolism" "TAIR-GO" "13" "1.09123846351610e-19" "2" "6.4083255981034e-06" "transport " "FunCat" "13" "3.04950801017738e-28" "3" "0" "transport facilitation" "FunCat" "13" "0" "3" "0" "Glutathione metabolism" "BioPath" "12" "7.06508546585237e-05" "2" "0.0182180299838378" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "12" "7.61578548561759e-09" "2" "0.00311996029428766" "transport ATPases" "FunCat" "11" "4.67311756120056e-10" "2" "0.00151602091185498" "Glutathione metabolism" "KEGG" "11" "6.76971139121497e-08" "2" "0.00178002918411937" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "10" "0.000133405087174874" "1" "0.0748872715561938" "Biosynthesis of prenyl diphosphates" "BioPath" "10" "0.000123000857867766" "1" "0.050377619664887" "Chlorophyll biosynthesis and breakdown" "BioPath" "10" "2.53061661609979e-05" "1" "0.0296997584918981" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "10" "0.0272762531585730" "1" "0.149560788189397" "aromatic amino acid family biosynthesis" "TAIR-GO" "10" "2.75573941866595e-08" "1" "0.00677277654930064" "aromatic amino acid family biosynthesis, anthranilate pathway" "TAIR-GO" "10" "0" "1" "0" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "10" "3.23410751490728e-09" "1" "0.00496582399523017" "chlorophyll catabolism" "TAIR-GO" "10" "7.3870197485478e-15" "1" "0.000237058006678803" "cysteine biosynthesis" "TAIR-GO" "10" "7.3870197485478e-15" "1" "0.000237058006678803" "glucosinolate biosynthesis" "TAIR-GO" "10" "8.93197451104073e-10" "1" "0.00215307171163213" "response to biotic stimulus" "TAIR-GO" "10" "0" "1" "0" "response to jasmonic acid stimulus" "TAIR-GO" "10" "1.28467382447700e-11" "1" "0.00162362182823024" "response to stress" "TAIR-GO" "10" "2.08582738169459e-13" "1" "0.000471537884850618" "alanine biosynthesis II" "AraCyc" "10" "3.56933520460566e-08" "1" "0.0290552369981534" "chlorophyll biosynthesis" "AraCyc" "10" "0.000137783551218559" "3" "0.00216954709739397" "cysteine biosynthesis I" "AraCyc" "10" "4.80023880113011e-06" "1" "0.065313801136439" "glucosinolate biosynthesis from homomethionine" "AraCyc" "10" "4.1211816603811e-12" "1" "0.00110989056699078" "phenylalanine biosynthesis II" "AraCyc" "10" "5.05797343104592e-09" "1" "0.0228316934293597" "sulfate assimilation III" "AraCyc" "10" "4.0381598154644e-05" "1" "0.0484511253933626" "tyrosine biosynthesis I" "AraCyc" "10" "4.1211816603811e-12" "1" "0.00388759315760676" "amino acid metabolism" "FunCat" "10" "0.00412662523424698" "1" "0.175148622936544" "Cysteine metabolism" "KEGG" "10" "1.83343934591510e-08" "1" "0.0107149184701399" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "10" "2.06706653946432e-06" "1" "0.0260340969455534" "Selenoamino acid metabolism" "KEGG" "10" "1.19129617443758e-07" "1" "0.0131373392165531" "Sulfur metabolism" "KEGG" "10" "1.94856057933681e-08" "1" "0.00717918270252098" "chlorophyll and phytochromobilin metabolism" "LitPath" "10" "0.0252754018414317" "1" "0.0957629830508004" "chlorophyll catabolism" "LitPath" "10" "6.43101968723637e-12" "1" "0.000710474218872533" "Glucosinolate Metabolism" "LitPath" "10" "0.00141440113266708" "1" "0.0351225640874845" "Phe/Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" "10" "2.96084610176766e-05" "1" "0.0223476892880649" "Shikimate pathway" "LitPath" "10" "0.0213267179082737" "1" "0.132951901392603" "Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "IAA biosynthesis" "AraCyc" "9" "5.83718690564296e-08" "1" "0.00698260387860911" "Biodegradation of Xenobiotics" "KEGG" "9" "3.31607128398062e-20" "1" "3.33959099646267e-05" "Nicotinate and nicotinamide metabolism" "KEGG" "9" "3.65081606838284e-05" "1" "0.0833867466402475" "Pantothenate and CoA biosynthesis" "KEGG" "9" "1.36230841320413e-09" "1" "0.00594746813924932" "GDP-carbohydrate biosynthesis" "BioPath" "8" "3.04636512848584e-09" "2" "5.73098478004603e-05" "ascorbate biosynthesis" "AraCyc" "8" "7.83238412910987e-10" "2" "9.34454577542072e-05" "biosynthesis of proto- and siroheme" "AraCyc" "8" "0.000371546236592848" "2" "0.00932986697373024" "cellulose biosynthesis" "AraCyc" "8" "0.000507479784237503" "2" "0.0113352516109954" "Fructose and mannose metabolism" "KEGG" "8" "5.95137110656771e-05" "2" "0.00231772524959043" "Oxidative phosphorylation" "KEGG" "7" "0.000548778143909547" "1" "0.0681148883852621" "MUTANT DATA SET" "quantDE" "2.160147" "maxDE" "5.801221122" "MUTANT DATA SET" "Phenylpropanoid Metabolism" "BioPath" "20" "1.54585267799133e-06" "2" "0.0804571638247246" "Sulfur metabolism" "KEGG" "15" "3.7264507177964e-14" "2" "0.000225114025963531" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "12" "0.0184021249633285" "2" "0.0739038287748763" "Glutathione metabolism" "BioPath" "12" "3.85754544299581e-06" "2" "0.0074051849580872" "cysteine biosynthesis I" "AraCyc" "12" "1.38419351926768e-10" "2" "0.00087570454660813" "sulfate assimilation III" "AraCyc" "12" "2.28035216253442e-09" "2" "0.000532927898182725" "nitrogen and sulfur metabolism" "FunCat" "12" "1.08359848604009e-13" "2" "6.21191471502102e-05" "Lipid signaling" "AcylLipid" "12" "0" "2" "0" "Oxidative phosphorylation" "KEGG" "11" "4.119941742894e-07" "3" "0.000644743947178238" "core phenylpropanoid metabolism" "BioPath" "10" "3.18387020281968e-06" "1" "0.0290542415537624" "Flavonoid and anthocyanin metabolism" "BioPath" "10" "9.17808307563857e-08" "1" "0.042083009517457" "phenylpropanoid metabolism" "TAIR-GO" "10" "1.17055523227653e-11" "1" "0.00144410504129582" "response to pathogenic fungi" "TAIR-GO" "10" "7.14280616897389e-16" "1" "0.000294184504921992" "response to UV" "TAIR-GO" "10" "7.82117402989097e-09" "1" "0.00719438352234495" "response to wounding" "TAIR-GO" "10" "1.42490834398640e-06" "1" "0.0201680843900238" "flavonoid biosynthesis" "AraCyc" "10" "3.12696492863845e-10" "1" "0.00776214978290882" "lignin biosynthesis" "AraCyc" "10" "4.79038077552907e-07" "1" "0.0198828514596915" "lipoxygenase pathway" "AraCyc" "10" "2.66270847912636e-12" "1" "0.00152676092766416" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "10" "8.14242449908918e-09" "1" "0.0120224671282060" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "10" "2.21332868918584e-05" "1" "0.106463094751995" "Glucosinolate Metabolism" "LitPath" "10" "1.83048815564496e-07" "1" "0.00706242724540631" "oxylipin pathway" "LitPath" "10" "4.52508513466703e-19" "1" "4.34440722735586e-05" "Phenylpropanoid pathway" "LitPath" "10" "0.000269259872290440" "1" "0.105894766889967" "abscisic acid mediated signaling" "TAIR-GO" "9" "1.00984011441822e-12" "1" "0.000584769985055494" "negative regulation of signal transduction" "TAIR-GO" "9" "0" "1" "0" "negative regulation of transcription" "TAIR-GO" "9" "0" "1" "0" "phosphoinositide-mediated signaling" "TAIR-GO" "9" "0" "1" "0" "regulation of transcription" "TAIR-GO" "9" "0" "1" "0" "response to abiotic stimulus" "TAIR-GO" "9" "1.95519362148877e-17" "1" "9.86652666584618e-05" "response to cold" "TAIR-GO" "9" "1.12162821369948e-10" "1" "0.00200939468717241" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "sulfur metabolism" "TAIR-GO" "9" "0" "1" "0" "stress response" "FunCat" "9" "0" "1" "0" "Inositol phosphate metabolism" "KEGG" "9" "0.000295010951575495" "1" "0.102869407499286" "Phosphatidylinositol signaling system" "KEGG" "9" "3.10127452842108e-07" "1" "0.0153328793380479" "Signal Transduction" "KEGG" "9" "4.45716258861559e-07" "1" "0.0162068593495094"