"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN ALL DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"ORGAN DATA SET"	"quantDE"	"3.286471"	"maxDE"	"6.1138048"	"ORGAN DATA SET"
"Glucosyltransferases for benzoic acids"	"BioPath"	"10"	"8.66696851602999e-15"	"1"	"0.00013239930464379"
"Phenylpropanoid Metabolism"	"BioPath"	"10"	"1.38782973885776e-05"	"1"	"0.0230054427992564"
"fatty acid beta oxidation complex"	"BioPath"	"9"	"1.94627092111136e-13"	"1"	"0.000390327775173137"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"9"	"1.94440478778599e-08"	"1"	"0.00376029753644749"
"development"	"TAIR-GO"	"9"	"2.27083459633970e-10"	"1"	"0.00191782831263210"
"flower development"	"TAIR-GO"	"9"	"1.65504405965087e-18"	"1"	"3.10939227358021e-05"
"seed germination"	"TAIR-GO"	"9"	"1.18003894572625e-27"	"1"	"0"
"fatty acid oxidation pathway"	"AraCyc"	"9"	"2.35206833247188e-11"	"1"	"0.000444204028837319"
"isoleucine degradation I"	"AraCyc"	"9"	"2.35206833247188e-11"	"1"	"0.000713967102326546"
"isoleucine degradation III"	"AraCyc"	"9"	"1.91322731770352e-14"	"1"	"0.000172453981112158"
"leucine degradation I"	"AraCyc"	"9"	"2.35206833247188e-11"	"1"	"0.000713967102326546"
"leucine degradation II"	"AraCyc"	"9"	"1.91322731770352e-14"	"1"	"0.000172453981112158"
"valine degradation I"	"AraCyc"	"9"	"1.74444962184728e-11"	"1"	"0.00143911402250249"
"valine degradation II"	"AraCyc"	"9"	"1.3953942930256e-14"	"1"	"0.000353876714354286"
"oxidation of fatty acids "	"FunCat"	"9"	"5.16243867404370e-35"	"1"	"2.06050890448923e-07"
"Degradation of storage lipids and straight fatty acids"	"AcylLipid"	"9"	"0"	"1"	"0"
"STRESS DATA SET"	"quantDE"	"1.937457"	"maxDE"	"3.670912"	"STRESS DATA SET"
"C-compound and carbohydrate metabolism"	"FunCat"	"52"	"1.64451070109447e-25"	"8"	"7.99405177403296e-05"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"51"	"2.12733227403453e-06"	"9"	"0.0316444029241850"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"40"	"2.09734548994920e-12"	"4"	"0.00910778766473627"
"Starch and sucrose metabolism"	"KEGG"	"36"	"7.35130425353743e-30"	"5"	"6.4577775004267e-07"
"starch metabolism"	"BioPath"	"30"	"1.00517425596237e-21"	"6"	"2.31254594955445e-07"
"starch degradation"	"AraCyc"	"21"	"1.11100896725536e-27"	"3"	"9.07260732784563e-07"
"Carotenoid biosynthesis"	"BioPath"	"20"	"1.49052180764346e-17"	"2"	"0.000558254249247676"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"20"	"1.99746778211125e-08"	"2"	"0.0144899102578195"
"carotenoid biosynthesis"	"AraCyc"	"20"	"4.58257974228953e-25"	"2"	"1.69983251406484e-05"
"carotenid biosynthesis"	"LitPath"	"20"	"2.77865388858789e-18"	"2"	"0.00035807792981171"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"20"	"1.07508881551331e-13"	"2"	"0.00266813347663059"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"20"	"7.84532265677685e-09"	"2"	"0.00995356604202018"
"Transcription (chloroplast)"	"BioPath"	"18"	"3.81910527147213e-19"	"2"	"0.000123781738228028"
"transcription initiation"	"TAIR-GO"	"18"	"1.4054616158988e-21"	"2"	"4.18052357117744e-05"
"Streptomycin biosynthesis"	"KEGG"	"17"	"2.86173940778085e-22"	"2"	"2.30733256660443e-05"
"glycolysis and gluconeogenesis"	"FunCat"	"14"	"0.000102605125196021"	"2"	"0.0588307787378238"
"mRNA processing in chloroplast"	"BioPath"	"12"	"2.32078241156738e-11"	"2"	"0.000736149873366062"
"starch biosynthesis"	"AraCyc"	"12"	"0"	"2"	"0"
"Other cell wall metabolism related enzymes"	"BioPath"	"10"	"7.4231843286624e-15"	"1"	"0.000244934465095558"
"carotene biosynthesis"	"TAIR-GO"	"10"	"1.26761618501055e-14"	"1"	"0.000264856619182462"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"3.15688167078989e-14"	"1"	"0.000264856619182462"
"hypersensitive response"	"TAIR-GO"	"10"	"2.76361721104762e-11"	"1"	"0.00130147071471247"
"photosynthesis"	"TAIR-GO"	"10"	"1.05710742671037e-06"	"1"	"0.0152050364645065"
"photosynthesis light harvesting"	"TAIR-GO"	"10"	"9.77470375681205e-11"	"1"	"0.00240145600291688"
"photosystem I"	"TAIR-GO"	"10"	"1.07862592682189e-11"	"1"	"0.00181154331111561"
"photosystem II"	"TAIR-GO"	"10"	"3.25773455765962e-13"	"1"	"0.000872685460777355"
"photosystem II (sensu Viridiplantae)"	"TAIR-GO"	"10"	"4.84148697537271e-14"	"1"	"0.000526652889028794"
"xanthophyll cycle"	"TAIR-GO"	"10"	"0"	"1"	"0"
"xanthophyll metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"biosynthesis of proto- and siroheme"	"AraCyc"	"10"	"8.69787553103518e-07"	"1"	"0.0208709878529296"
"xanthophyll cycle"	"AraCyc"	"10"	"1.95593629097752e-19"	"1"	"2.89835870087282e-05"
"Biosynthesis of steroids"	"KEGG"	"10"	"4.97361703067241e-05"	"1"	"0.0185321296260179"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"2.16776722707021e-07"	"1"	"0.00661944665260201"
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	"10"	"8.01755970441418e-08"	"2"	"0.00760051580680611"
"chlorophyll catabolism"	"LitPath"	"10"	"1.36676682663652e-12"	"1"	"0.000581874631226725"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"1.13626869101490e-08"	"1"	"0.0039462467666891"
"Phytic acid biosynthesis"	"BioPath"	"9"	"5.2187166880415e-05"	"1"	"0.0502193318313307"
"myo-inositol biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"Inositol phosphate metabolism"	"KEGG"	"9"	"0.000505410185321524"	"1"	"0.0725931234020313"
"Chlorophyll a/b binding proteins"	"BioPath"	"8"	"0.00186348155242367"	"1"	"0.0353167977075559"
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	"8"	"0.00718202558332967"	"1"	"0.0805863208510075"
"light harvesting complex"	"BioPath"	"8"	"1.54008403589191e-07"	"1"	"0.00352856272131270"
"lipid biosynthesis"	"TAIR-GO"	"8"	"8.5003695253077e-09"	"1"	"0.000872685460777355"
"phospholipid biosynthesis"	"TAIR-GO"	"8"	"2.95490742492816e-11"	"1"	"0.000264856619182462"
"starch biosynthesis"	"TAIR-GO"	"8"	"1.06108936488114e-07"	"1"	"0.00181154331111561"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"8"	"7.30654906767366e-10"	"1"	"0.00217910741593779"
"lactose degradation IV"	"AraCyc"	"8"	"6.84150012492087e-13"	"1"	"0.000598560556356067"
"phospholipid biosynthesis II"	"AraCyc"	"8"	"5.92298314247231e-07"	"1"	"0.00626270904654738"
"trehalose biosynthesis I"	"AraCyc"	"8"	"0.00133244183841777"	"1"	"0.0646271200836398"
"trehalose biosynthesis II"	"AraCyc"	"8"	"0.000120379671066194"	"1"	"0.0348885915380802"
"trehalose biosynthesis III"	"AraCyc"	"8"	"2.26864009263442e-06"	"1"	"0.0130071909366127"
"C-compound, carbohydrate catabolism"	"FunCat"	"8"	"3.57349705472716e-06"	"2"	"0.00353327152225202"
"Galactose metabolism"	"KEGG"	"8"	"7.75710825911336e-06"	"1"	"0.00867398268026225"
"Glycerophospholipid metabolism"	"KEGG"	"8"	"1.02990085263556e-06"	"1"	"0.00482377615784707"
"Glycolysis / Gluconeogenesis"	"KEGG"	"8"	"0.00279736483600921"	"1"	"0.0481569694067029"
"Pentose phosphate pathway"	"KEGG"	"8"	"1.45554517477632e-05"	"1"	"0.0148840365120237"
"Phosphatidylinositol signaling system"	"KEGG"	"8"	"5.16335924640915e-06"	"1"	"0.0103793169282528"
"Signal Transduction"	"KEGG"	"8"	"7.10065660471987e-06"	"1"	"0.0109783407805342"
"gibberellic acid biosynthesis"	"TAIR-GO"	"7"	"3.16925255215729e-05"	"1"	"0.00463602968233662"
"photomorphogenesis"	"TAIR-GO"	"7"	"1.75517758540898e-11"	"1"	"0.000264856619182462"
"starch catabolism"	"TAIR-GO"	"7"	"1.86631470869367e-10"	"1"	"0.000264856619182462"
"acetyl-CoA assimilation"	"AraCyc"	"7"	"8.8163976257027e-05"	"1"	"0.0130071909366127"
"gluconeogenesis"	"AraCyc"	"7"	"0.000501737810783585"	"1"	"0.0248661342395547"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"7"	"2.45553848849707e-06"	"1"	"0.00683635068553257"
"mRNA synthesis "	"FunCat"	"7"	"5.75574595388362e-06"	"1"	"0.0177482067330880"
"RNA synthesis "	"FunCat"	"7"	"5.75574595388362e-06"	"1"	"0.0177482067330880"
"transcription"	"FunCat"	"7"	"1.38067231535233e-08"	"1"	"0.00489068009368575"
"transcriptional control"	"FunCat"	"7"	"1.20899484151124e-07"	"1"	"0.00358061028899519"
"HORMONE DATA SET"	"quantDE"	"1.429345"	"maxDE"	"3.9322906"	"HORMONE DATA SET"
"biogenesis of chloroplast"	"FunCat"	"16"	"1.34677334509156e-09"	"2"	"0.00399302532753427"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"10"	"7.55304743018073e-06"	"1"	"0.0244004688252375"
"Chloroplastic protein import via envelope membrane"	"BioPath"	"10"	"2.39467607961683e-11"	"2"	"6.59056046040984e-05"
"Delta-pH pathway"	"BioPath"	"10"	"9.8920510332294e-19"	"1"	"5.61846910532787e-05"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"10"	"3.62545845513075e-05"	"1"	"0.0362278005262169"
"Intermediary Carbon Metabolism"	"BioPath"	"10"	"0.0158928643832103"	"1"	"0.155862393180017"
"mRNA processing in chloroplast"	"BioPath"	"10"	"7.54858428912086e-14"	"1"	"0.00120836145161146"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"10"	"3.76583316692088e-11"	"1"	"0.00142447215594938"
"Phenylpropanoid Metabolism"	"BioPath"	"10"	"0.048255680122449"	"1"	"0.180307976009156"
"Translation (chloroplast)"	"BioPath"	"10"	"2.73648810126330e-15"	"1"	"0.000389350406285737"
"aromatic amino acid family biosynthesis"	"TAIR-GO"	"10"	"3.21110807764958e-12"	"1"	"0.00129110488743421"
"aromatic amino acid family biosynthesis, shikimate pathway"	"TAIR-GO"	"10"	"3.36939517463655e-13"	"1"	"0.000940242643224858"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"8.38995887543490e-18"	"1"	"8.68853042407226e-05"
"pentose-phosphate shunt"	"TAIR-GO"	"10"	"6.57977958592629e-14"	"1"	"0.000940242643224858"
"acetate fermentation"	"AraCyc"	"10"	"3.31571609195195e-07"	"1"	"0.0197493360233946"
"Calvin cycle"	"AraCyc"	"10"	"2.88748788180673e-09"	"1"	"0.00643958883593563"
"fructose degradation (anaerobic)"	"AraCyc"	"10"	"1.84489781491536e-07"	"1"	"0.0170876493076245"
"glycolysis I"	"AraCyc"	"10"	"0.000138792513374151"	"1"	"0.0631396369275309"
"glycolysis IV"	"AraCyc"	"10"	"1.98950206307768e-07"	"1"	"0.0176065497069284"
"mannitol degradation"	"AraCyc"	"10"	"4.19488185816084e-12"	"1"	"0.00281445264850405"
"sorbitol degradation"	"AraCyc"	"10"	"6.58573380494674e-12"	"1"	"0.00304339370950024"
"sorbitol fermentation"	"AraCyc"	"10"	"3.55822426971199e-07"	"1"	"0.0186645902777250"
"amino acid metabolism"	"FunCat"	"10"	"0.00684157193929101"	"1"	"0.106689881249566"
"glycolysis and gluconeogenesis"	"FunCat"	"10"	"0.00299498761318374"	"1"	"0.131881553912366"
"pentose-phosphate pathway "	"FunCat"	"10"	"5.42237505223523e-10"	"1"	"0.00553644894266921"
"protein modification "	"FunCat"	"10"	"2.97806255012586e-13"	"1"	"0.00321483779732179"
"Carbon fixation"	"KEGG"	"10"	"8.61342887443672e-08"	"1"	"0.0162666883605691"
"Fructose and mannose metabolism"	"KEGG"	"10"	"3.36282543946339e-09"	"1"	"0.00836191779202458"
"Glycolysis / Gluconeogenesis"	"KEGG"	"10"	"3.30713571448794e-07"	"1"	"0.0224176854082316"
"Pentose phosphate pathway"	"KEGG"	"10"	"2.07008345892761e-10"	"1"	"0.00668188731086791"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"10"	"5.60422261118228e-09"	"1"	"0.00733305728920212"
"chorismate biosynthesis"	"LitPath"	"10"	"9.50967950762583e-14"	"1"	"0.00231632824980773"
"Shikimate pathway"	"LitPath"	"10"	"9.62424577658524e-09"	"1"	"0.0188414241313220"
"acetate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"glyoxylate cycle"	"TAIR-GO"	"9"	"0"	"1"	"0"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"9"	"8.92076885297027e-06"	"1"	"0.0202779574320199"
"transport "	"FunCat"	"8"	"1.30826085971075e-15"	"2"	"1.34985169080219e-07"
"MUTANT DATA SET"	"quantDE"	"2.095643"	"maxDE"	"5.395094608"	"HORMONE DATA SET"