Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP76C3 (At2g45580)	save all data as Tab Delimited Table
_________________________________________
Pathways co-expressed in the 2 applicable data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
monoterpene biosynthesis	LitPath	50	5
monoterpene biosynthesis	AraCyc	40	4
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP76C3 (At2g45580)
max. difference between log2-ratios:				7.3
max. difference between log2-ratios excluding lowest and highest 5%:				3.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
mono-/sesqui-/di-terpene biosynthesis	LitPath	30	0.000	3	0.001
terpenoid metabolism	LitPath	30	0.000	3	0.002
Cell Wall Carbohydrate Metabolism	BioPath	20	0.000	5	0.032
monoterpene biosynthesis	LitPath	20	0.000	2	0.000
Lipid signaling	AcylLipid	12	0.001	2	0.102
pectin metabolism	BioPath	10	0.000	4	0.004
Phenylpropanoid Metabolism	BioPath	10	0.003	3	0.037
sucrose metabolism	BioPath	10	0.000	1	0.009
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
N-terminal protein myristoylation	TAIR-GO	10	0.000	1	0.000
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
Galactose metabolism	KEGG	10	0.000	1	0.000
Starch and sucrose metabolism	KEGG	10	0.000	1	0.001
Synthesis of membrane lipids in endomembrane system	AcylLipid	7	0.003	1	0.077
Pathways co-expressed in the Stress data set						CYP76C3 (At2g45580)
max. difference between log2-ratios:				2.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
						Link to stress heatmap
there are no co-expressed pathways with r-value greater than 0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP76C3 (At2g45580)
max. difference between log2-ratios:				1.9
max. difference between log2-ratios excluding lowest and highest 5%:				0.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	71	0.000	16	0.000
pectin metabolism	BioPath	53	0.000	13	0.000
Starch and sucrose metabolism	KEGG	42	0.000	6	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	30	0.000	3	0.001
terpenoid metabolism	LitPath	30	0.000	3	0.001
sucrose metabolism	BioPath	16	0.000	2	0.002
Galactose metabolism	KEGG	16	0.000	2	0.000
C-compound and carbohydrate utilization	FunCat	14	0.000	2	0.000
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
N-terminal protein myristoylation	TAIR-GO	10	0.000	1	0.001
pentacyclic triterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.001
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
Biosynthesis of steroids	KEGG	10	0.000	1	0.010
Lipid signaling	AcylLipid	10	0.001	1	0.261
monoterpene biosynthesis	LitPath	10	0.000	1	0.002
triterpene biosynthesis	LitPath	10	0.000	1	0.008
lactose degradation IV	AraCyc	8	0.000	2	0.000
C-compound and carbohydrate metabolism	FunCat	8	0.034	2	0.190
Oxidative phosphorylation	KEGG	8	0.000	2	0.002
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP76C3 (At2g45580)
max. difference between log2-ratios:				3.4
max. difference between log2-ratios excluding lowest and highest 5%:				1.1
						Link to mutants heatmap
there are no co-expressed pathways with more than 6 annotation points
page created by Juergen Ehlting	03/06/06