"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"secondary metabolism"	"TAIR-GO"	30	5		
"Transcription"	"KEGG"	29	6		
"ORGAN DATA SET"	"quantDE"	2.355823	"maxDE"	7.791194	"ORGAN DATA SET"
"Synthesis and storage of oil"	"AcylLipid"	38	5.85863724945956E-045	10	0.00000000000322681686478486
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	29	0.00234468986015028	7	0.445936154684038
"glycolysis and gluconeogenesis"	"FunCat"	28	0.0000000119203560485295	6	0.00780133360610823
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	26	0.0000000712918713533018	4	0.0315512447818611
"C-compound and carbohydrate metabolism"	"FunCat"	26	0.0247359539666296	9	0.0326204853460734
"amino acid metabolism"	"FunCat"	20	0.000746794885002674	2	0.336936839786363
"Phenylpropanoid pathway"	"LitPath"	20	0.0000000000847602715950306	5	0.000592742023486804
"acyl-CoA binding"	"TAIR-GO"	19	0	2	0
"lipid transport"	"TAIR-GO"	19	1.05540909206023E-032	2	0.0000124204516188117
"Pyruvate metabolism"	"KEGG"	18	0.0000000232820728009928	3	0.0113339045490353
"Intermediary Carbon Metabolism"	"BioPath"	16	0.000466248270396352	3	0.08858938579087
"Phenylpropanoid Metabolism"	"BioPath"	15	0.00728972183665398	3	0.114448487547869
"core phenylpropanoid metabolism"	"BioPath"	14	0.0000000156597279607455	2	0.0122600209475673
"lignin biosynthesis"	"AraCyc"	12	0.0000205329596758488	2	0.0352924136649828
"TCA cycle variation VII"	"AraCyc"	12	0.000558937807953108	2	0.108230822031146
"Branched-chain amino acids from aspartate"	"BioPath"	10	0.0000000731292126831281	1	0.0296521348695881
"Glutamate/glutamine from nitrogen fixation"	"BioPath"	10	0.0000000018520155049152	1	0.00835991987446661
"lignin biosynthesis"	"TAIR-GO"	10	0.0000000000036351017273827	1	0.00190302376163038
"ammonia assimilation cycle"	"AraCyc"	10	0.00000000133785905384979	1	0.00898896907276668
"glutamine biosynthesis I"	"AraCyc"	10	0.0000000003438426729023	1	0.00535675722703688
"glyoxylate cycle"	"AraCyc"	10	0.00000219565606468353	1	0.0544795502077376
"nitrate assimilation pathway"	"AraCyc"	10	0.0000000126356217386593	1	0.0111170768898149
"sorbitol fermentation"	"AraCyc"	10	0.00109535095923302	3	0.0228019191020812
"sucrose biosynthesis"	"AraCyc"	10	0.000000168165413796331	2	0.00402209751792247
"TCA cycle variation VIII"	"AraCyc"	10	0.000298725112724397	1	0.193724268434713
"threonine biosynthesis from homoserine"	"AraCyc"	10	0.00000000000038248490204607	1	0.00260603414472465
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	10	0.0000140143286988706	1	0.0642063051686725
"glyoxylate cycle"	"FunCat"	10	7.31835962276477E-016	1	0.00115391158653258
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	10	0.00101428750838	2	0.0468074851213004
"nitrogen and sulfur metabolism"	"FunCat"	10	0.0000178983767750347	1	0.0588275265984674
"Glutamate metabolism"	"KEGG"	10	0.000120495726736484	1	0.0977303617413431
"Glycan Biosynthesis and Metabolism"	"KEGG"	10	0.000218778358353476	1	0.181681931025555
"Glycine, serine and threonine metabolism"	"KEGG"	10	0.00000463557550097158	1	0.071942144136814
"Glyoxylate and dicarboxylate metabolism"	"KEGG"	10	0.000000574781762814642	1	0.0459141062027755
"Nitrogen metabolism"	"KEGG"	10	0.0000395550950787545	1	0.0584125629349012
"Peptidoglycan biosynthesis"	"KEGG"	10	0.00000000000021820074762183	1	0.00145405517596079
"Purine metabolism"	"KEGG"	10	0.000266318689124768	3	0.00598335961290781
"Vitamin B6 metabolism"	"KEGG"	10	0.0000000000000454940462940866	1	0.00300570775431705
"degradation of abscisic acid"	"LitPath"	10	0.0000000000000987823464367303	1	0.00140835526514272
"degradation "	"FunCat"	9	0.00000745147779279201	2	0.0140809250954789
"protein degradation "	"FunCat"	9	0.000000300676504519952	2	0.00579275911574138
"mixed acid fermentation"	"AraCyc"	8	0.000269067605110674	2	0.0193659591755226
"transport "	"FunCat"	8	0.00000000000108887223054044	2	0.00000750755749207925
"Carbon fixation"	"KEGG"	8	0.00903338491899445	2	0.0451011645640216
"Transcription"	"KEGG"	8	0.00329343876134261	2	0.0682409497540278
"secondary metabolism"	"TAIR-GO"	7	0	1	0
"STRESS DATA SET"	"quantDE"	3.469447E-018	"maxDE"	2.128103	"STRESS DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	30	0.00000000825474290162613	9	0.00337692852713978
"C-compound and carbohydrate metabolism"	"FunCat"	24	0.00115305722597472	6	0.0321739719726388
"nucleotide metabolism"	"FunCat"	16	0	4	0
"UDP-carbohydrate metabolism"	"BioPath"	14	7.64071942110991E-015	2	0.00191707815010089
"(deoxy)ribose phosphate degradation"	"AraCyc"	14	4.033478740749E-027	3	0.0000000152722282481411
"pyrimidine nucleotide metabolism"	"FunCat"	14	1.27210381537856E-015	3	0.0000358923854939397
"Nucleotide Metabolism"	"KEGG"	14	0.00000104213941525736	3	0.00543832103256998
"Pyrimidine metabolism"	"KEGG"	14	0.0000000000958330894263173	3	0.000494461543165449
"Streptomycin biosynthesis"	"KEGG"	14	6.49227011007564E-016	2	0.000211781268900677
"Phenylpropanoid Metabolism"	"BioPath"	13	0.00633180002914006	4	0.0465100212782157
"pectin metabolism"	"BioPath"	12	0.00000683535228617174	5	0.00649844341870445
"secondary metabolism"	"FunCat"	11	0.0000127278384663851	2	0.0331680243808857
"D-xylose metabolism"	"TAIR-GO"	10	1.24361882629943E-020	1	0.000065208381011973
"gibberellic acid biosynthesis"	"TAIR-GO"	10	0.0000000000000675284082808341	1	0.000590661340693183
"gibberellin biosynthesis"	"AraCyc"	10	2.39687994607952E-016	1	0.000537487177214745
"plant / fungal specific systemic sensing and response "	"FunCat"	10	0.0000000531285452693657	1	0.020664953490688
"plant hormonal regulation"	"FunCat"	10	0.0000000531285452693657	1	0.020664953490688
"transcription"	"FunCat"	10	0.00000000000898293353742849	2	0.000512937950597373
"Biosynthesis of Polyketides and Nonribosomal Peptides"	"KEGG"	10	0.000000000000717441644008393	1	0.00179151347754474
"Biosynthesis of vancomycin group antibiotics"	"KEGG"	10	9.27711877052044E-021	1	0.000087911762989887
"Diterpenoid biosynthesis"	"KEGG"	10	0.0000000117776372635637	1	0.0054643149039371
"Nucleotide sugars metabolism"	"KEGG"	10	0.000000000516332818188136	1	0.0135780918278383
"Polyketide sugar unit biosynthesis"	"KEGG"	10	9.27711877052044E-021	1	0.000087911762989887
"Gibberellin metabolism"	"LitPath"	10	0.0000000860523929906308	1	0.0236115736548236
"giberelin biosynthesis"	"LitPath"	10	0.00000000196047679296021	1	0.013977682102129
"Flavonoid and anthocyanin metabolism"	"BioPath"	9	0.00000104486731790076	2	0.0251754682720087
"flavonoid biosynthesis"	"TAIR-GO"	8	0.000000000000516062211714506	1	0.000227066879979349
"mRNA synthesis "	"FunCat"	8	0.00000420979333089652	1	0.0399765120293131
"RNA synthesis "	"FunCat"	8	0.00000420979333089652	1	0.0399765120293131
"transcriptional control"	"FunCat"	8	0.000000056203313004959	1	0.00840297400868138
"Starch and sucrose metabolism"	"KEGG"	8	0.015268659445799	3	0.00518706971289261
"Transcription"	"KEGG"	8	0.00188802221935459	2	0.0357199722814004
"Translation factors"	"KEGG"	8	0.00289944241877563	3	0.0084129180607283
"biotin biosynthesis"	"TAIR-GO"	7	4.93393179341934E-016	1	0.0000326597153245875
"iron-sulfur cluster assembly"	"TAIR-GO"	7	0	1	0
"biotin biosynthesis I"	"AraCyc"	7	0.000000000000533238952202754	1	0.000448655277160873
"Biotin metabolism"	"KEGG"	7	0.00000000000463697129410987	1	0.00128735500140215
"Nitrogen metabolism"	"KEGG"	7	0.00206575970639124	1	0.0364602315357538
"HORMONE DATA SET"	"quantDE"	1.370204	"maxDE"	2.2333456	"HORMONE DATA SET"
"MUTANT DATA SET"	"quantDE"	0.8595637	"maxDE"	6.490524124	"HORMONE DATA SET"
"Synthesis and storage of oil"	"AcylLipid"	16	1.40348224331699E-022	5	0.0000000224532380020772
"Transcription"	"KEGG"	13	0.0000000000021849113489801	2	0.00184511144438427
"secondary metabolism"	"FunCat"	12	0.0000000081620638996786	2	0.0091404543014866
"gibberellic acid biosynthesis"	"TAIR-GO"	10	0.0000000000000258596373319779	1	0.00100637567966791
"gibberellin biosynthesis"	"AraCyc"	10	0.0000000000000246095788803923	1	0.00202283621911169
"plant / fungal specific systemic sensing and response "	"FunCat"	10	0.000000000337325844426883	1	0.00825869501803906
"plant hormonal regulation"	"FunCat"	10	0.000000000337325844426883	1	0.00825869501803906
"Diterpenoid biosynthesis"	"KEGG"	10	0.00000000000032896800204895	1	0.00066683761635743
"Gibberellin metabolism"	"LitPath"	10	0.0000000000173969695003005	1	0.00344112183428118
"giberelin biosynthesis"	"LitPath"	10	0.000000000000325292269531763	1	0.00198937964363037
"DNA-directed RNA polymerase II, core complex"	"TAIR-GO"	9	0	1	0
"transcription from RNA polymerase II promoter"	"TAIR-GO"	9	0	1	0
"RNA polymerase"	"KEGG"	9	0.000000000708550673593472	1	0.00747576809803539
"Carbon fixation"	"KEGG"	8	0.00000396293207970201	2	0.00112771246125366
"transport "	"FunCat"	7	0.0000000000000960223662626657	1	0.000155689511925906
"transport ATPases"	"FunCat"	7	0.00000840083301817179	1	0.022602375973018
"transport facilitation"	"FunCat"	7	0	1	0.000155689511925906
"Oxidative phosphorylation"	"KEGG"	7	0.00000565546767903903	1	0.0236713456526556