"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN TWO DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Lipid signaling" "AcylLipid" "123" "29" "" "" "cellulose biosynthesis" "BioPath" "120" "20" "" "" "secondary metabolism" "FunCat" "75" "18" "" "" "transport " "FunCat" "72" "19" "" "" "lipases pathway" "AraCyc" "62" "10" "" "" "triacylglycerol degradation" "AraCyc" "61.5" "23" "" "" "sorbitol fermentation" "AraCyc" "60" "15" "" "" "nucleotide metabolism" "FunCat" "55" "11" "" "" "nucleotide metabolism" "FunCat" "55" "11" "" "" "intracellular signalling" "FunCat" "51.5" "13" "" "" "lipid, fatty acid and isoprenoid degradation" "FunCat" "49" "7" "" "" "trans-zeatin biosynthesis" "AraCyc" "48" "9" "" "" "hemicellulose biosynthesis" "BioPath" "44" "5" "" "" "TCA cycle variation IV" "AraCyc" "43" "9" "" "" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "42" "8" "" "" "alanine biosynthesis II" "AraCyc" "42" "7" "" "" "phenylalanine biosynthesis II" "AraCyc" "42" "7" "" "" "Ligand-Receptor Interaction" "KEGG" "40" "20" "" "" "mixed acid fermentation" "AraCyc" "40" "8" "" "" "Ion channels" "KEGG" "38" "19" "" "" "Glycerophospholipid metabolism" "KEGG" "34" "6" "" "" "jasmonic acid biosynthesis" "TAIR-GO" "34" "6" "" "" "jasmonic acid biosynthesis" "TAIR-GO" "34" "6" "" "" "defense response" "TAIR-GO" "33.5" "5" "" "" "plant / fungal specific systemic sensing and response " "FunCat" "33" "7" "" "" "plant hormonal regulation" "FunCat" "33" "7" "" "" "C-compound and carbohydrate utilization " "FunCat" "31" "9" "" "" "lignin biosynthesis" "AraCyc" "26" "5" "" "" "lignin biosynthesis" "AraCyc" "26" "5" "" "" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "22.5" "3" "" "" "response to pathogenic bacteria" "TAIR-GO" "22.5" "3" "" "" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "21" "3" "" "" "salycilic acid biosynthesis" "BioPath" "20" "2" "" "" "gibberellic acid catabolism" "TAIR-GO" "20" "2" "" "" "porphyrin biosynthesis" "TAIR-GO" "20" "3" "" "" "salicylic acid biosynthesis" "TAIR-GO" "20" "2" "" "" "salicylic acid biosynthesis" "TAIR-GO" "20" "2" "" "" "triacylglycerol biosynthesis" "AraCyc" "20" "2" "" "" "giberelin catabolism" "LitPath" "20" "2" "" "" "ORGAN DATA SET" "quantDE" "0" "maxDE" "0" "ORGAN DATA SET" "STRESS DATA SET" "quantDE" "2.979945" "maxDE" "6.244177" "STRESS DATA SET" "HORMONE DATA SET" "quantDE" "0" "maxDE" "3.9931353" "HORMONE DATA SET" "Lipid signaling" "AcylLipid" "48" "7.01257891620745e-06" "13" "0.00446738002120245" "Inositol phosphate metabolism" "KEGG" "46" "2.73800250466051e-16" "14" "1.99630028331580e-06" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "42" "0.00172066353880140" "8" "0.0239091428323385" "Leaf Glycerolipid Biosynthesis" "BioPath" "42" "0.0149386224404914" "7" "0.0738749810792538" "Benzoate degradation via CoA ligation" "KEGG" "42" "3.87546311681391e-15" "13" "3.63290952144854e-06" "Nicotinate and nicotinamide metabolism" "KEGG" "42" "2.1231259569684e-17" "13" "1.31101796176705e-06" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "40" "2.4062841979255e-07" "4" "0.0594717208358634" "secondary metabolism" "FunCat" "36" "9.83275252911885e-21" "7" "0.000137264311525126" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "34" "9.21198873683342e-20" "6" "6.79971508662962e-06" "Chlorophyll biosynthesis and breakdown" "BioPath" "30" "6.33468916456358e-12" "3" "0.00924006382320417" "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" "30" "5.24369975748008e-08" "3" "0.0564793806491997" "Propanoate metabolism" "KEGG" "30" "5.97382083957815e-17" "5" "0.00068169053859453" "Synthesis of membrane lipids in plastids" "AcylLipid" "30" "2.44232675130780e-11" "3" "0.0182700253984310" "chlorophyll and phytochromobilin metabolism" "LitPath" "30" "1.06568515320757e-07" "3" "0.0283690977636778" "triacylglycerol degradation" "AraCyc" "29.5" "1.8840244236335e-21" "8" "9.09568500587978e-06" "Phenylpropanoid pathway" "LitPath" "28" "0.00109755156677601" "5" "0.0591145626596634" "Glycerolipid metabolism" "KEGG" "26" "1.99196906754184e-10" "3" "0.032658633234202" "Glycan Biosynthesis and Metabolism" "KEGG" "25" "1.58245845977404e-06" "7" "0.00208160014033789" "ethylene biosynthesis" "TAIR-GO" "24" "1.04333848266204e-23" "4" "2.77001994799769e-06" "biosynthesis of proto- and siroheme" "AraCyc" "24" "5.99818919853557e-11" "3" "0.0237733183925943" "cellulose biosynthesis" "BioPath" "20" "3.13902249871124e-06" "3" "0.0267452562428641" "cellular response to phosphate starvation" "TAIR-GO" "20" "2.875056415864e-17" "2" "0.00222949841629121" "galactolipid biosynthesis" "TAIR-GO" "20" "3.21956148918663e-19" "2" "0.000430748987586888" "lipid biosynthesis" "TAIR-GO" "20" "3.21956148918663e-19" "2" "0.000430748987586888" "glycosylglyceride biosynthesis" "AraCyc" "20" "8.63896431834071e-18" "2" "0.000622358773611194" "Fructose and mannose metabolism" "KEGG" "20" "3.85966902217753e-05" "3" "0.0902877198841905" "Ion channels" "KEGG" "20" "1.23854336927505e-09" "10" "1.12995722299069e-06" "Ligand-Receptor Interaction" "KEGG" "20" "2.09574232731624e-09" "10" "1.73207271975873e-06" "Porphyrin and chlorophyll metabolism" "KEGG" "20" "6.24651433075603e-07" "2" "0.077145171657235" "phytochromobilin biosynthesis" "LitPath" "20" "1.63171925504299e-14" "2" "0.00140399071085210" "systemic acquired resistance" "TAIR-GO" "19.5" "5.78205015459301e-19" "3" "5.07355327937081e-05" "intracellular signalling" "FunCat" "19" "1.40595739262579e-08" "5" "0.00285819717036903" "defense response" "TAIR-GO" "16.5" "9.48956144328248e-06" "3" "0.00490959651356095" "hemicellulose biosynthesis" "BioPath" "16" "5.72474155266866e-09" "2" "0.00710946005191429" "fructose degradation (anaerobic)" "AraCyc" "16" "0.000371901928567596" "4" "0.0267517598575659" "lignin biosynthesis" "AraCyc" "16" "0.000179195662980208" "4" "0.00618695329842292" "phospholipid biosynthesis II" "AraCyc" "16" "8.38711274903066e-09" "3" "0.00254213972250162" "sorbitol fermentation" "AraCyc" "16" "0.000782163978960107" "4" "0.0319292974313736" "plant / fungal specific systemic sensing and response " "FunCat" "16" "7.85708102679514e-10" "4" "9.71824223471426e-05" "plant hormonal regulation" "FunCat" "16" "7.85708102679514e-10" "4" "9.71824223471426e-05" "de novo biosynthesis of purine nucleotides I" "AraCyc" "15" "0.00548535302381473" "4" "0.0851055933875626" "lipases pathway" "AraCyc" "15" "3.51465677446243e-07" "3" "0.00478116856733701" "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" "14" "0.0268467565089753" "2" "0.165506453778822" "core phenylpropanoid metabolism" "BioPath" "14" "0.00920803892045856" "2" "0.106753596785434" "chlorophyll biosynthesis" "AraCyc" "14" "0.00277136803296748" "2" "0.165062984207888" "biogenesis of chloroplast" "FunCat" "14" "0.0187578308484042" "2" "0.215510890653418" "lipid, fatty acid and isoprenoid degradation" "FunCat" "14" "1.06105230100807e-07" "2" "0.0326122335696938" "Glycerophospholipid metabolism" "KEGG" "14" "2.89478294973757e-05" "2" "0.0519662474113274" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "12.5" "1.03914971442769e-10" "2" "0.000430748987586888" "response to pathogenic bacteria" "TAIR-GO" "12.5" "1.03914971442769e-10" "2" "0.000430748987586888" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "12" "0.00156034094214198" "4" "0.000828050235644793" "trans-zeatin biosynthesis" "AraCyc" "12" "1.59444430014302e-11" "2" "0.000976211315444525" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "12" "0.00258093607887498" "2" "0.0916840482714222" "Alanine and aspartate metabolism" "KEGG" "12" "0.00270416415060369" "2" "0.106654738623845" "beta-Alanine metabolism" "KEGG" "12" "4.9777254922732e-05" "2" "0.0362573118322453" "Butanoate metabolism" "KEGG" "12" "0.000379420746514202" "2" "0.0639768549880675" "Nucleotide sugars metabolism" "KEGG" "12" "2.42988428255398e-06" "4" "0.000509774986428592" "Taurine and hypotaurine metabolism" "KEGG" "12" "2.87557763569980e-12" "2" "0.000479133777733638" "response to auxin stimulus" "TAIR-GO" "11" "2.73060719265556e-07" "2" "0.00325783975604055" "gluconeogenesis" "AraCyc" "11" "0.0114019598208234" "2" "0.120851283185359" "Phylloquinone biosynthesis" "BioPath" "10" "6.97284150822274e-12" "1" "0.00909257016284828" "salycilic acid biosynthesis" "BioPath" "10" "6.2990298891203e-10" "1" "0.00376029753644749" "aging" "TAIR-GO" "10" "1.8045769067256e-06" "1" "0.0313658363758559" "gibberellic acid catabolism" "TAIR-GO" "10" "1.31469011195909e-07" "1" "0.0120196819369716" "jasmonic acid biosynthesis" "TAIR-GO" "10" "0.00318290087166642" "2" "0.0289891871014387" "lignin biosynthesis" "TAIR-GO" "10" "6.28544550459611e-05" "1" "0.039396692552946" "lipid metabolism" "TAIR-GO" "10" "6.61094268109574e-10" "1" "0.00378050246390903" "phenylpropanoid metabolism" "TAIR-GO" "10" "1.51508635897077e-06" "1" "0.0176099511763453" "phospholipid metabolism" "TAIR-GO" "10" "2.68471497455510e-12" "1" "0.00129043782971725" "porphyrin biosynthesis" "TAIR-GO" "10" "9.57501730119585e-05" "1" "0.0777988221233655" "response to wounding" "TAIR-GO" "10" "0.0202582119738919" "3" "0.00701780972145114" "salicylic acid biosynthesis" "TAIR-GO" "10" "2.15059070336266e-13" "1" "0.00129043782971725" "jasmonic acid biosynthesis" "AraCyc" "10" "0.000238513466732925" "2" "0.0116802030370663" "lipoxygenase pathway" "AraCyc" "10" "4.5412929179629e-06" "2" "0.00354334750672458" "menaquinone biosynthesis" "AraCyc" "10" "7.27295425724625e-11" "1" "0.0230489707468959" "mixed acid fermentation" "AraCyc" "10" "0.00275588906175267" "2" "0.0674045472415164" "salicylic acid biosynthesis" "AraCyc" "10" "7.4294078018946e-08" "1" "0.0101267808204283" "triacylglycerol biosynthesis" "AraCyc" "10" "4.90347927552204e-08" "1" "0.0101267808204283" "aerobic respiration" "FunCat" "10" "1.94659634303309e-05" "1" "0.0575525897534944" "C-compound and carbohydrate utilization " "FunCat" "10" "1.22943626388280e-16" "3" "0" "nucleotide metabolism" "FunCat" "10" "0" "2" "0" "respiration" "FunCat" "10" "1.94659634303309e-05" "1" "0.0575525897534944" "Biosynthesis of Polyketides and Nonribosomal Peptides" "KEGG" "10" "2.08283647705108e-07" "1" "0.0255829342417402" "Diterpenoid biosynthesis" "KEGG" "10" "0.000912327278456779" "1" "0.071212494261594" "Prostaglandin and leukotriene metabolism" "KEGG" "10" "0.00267481661909523" "4" "0.0929688961984317" "Ubiquinone biosynthesis" "KEGG" "10" "6.48461750969914e-08" "1" "0.0607927392963046" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "10" "0.00108188181980219" "1" "0.090355278491885" "degradation of abscisic acid" "LitPath" "10" "2.93141828591127e-07" "1" "0.0074700296295571" "Gibberellin metabolism" "LitPath" "10" "0.0189700846340566" "1" "0.126290571507061" "giberelin catabolism" "LitPath" "10" "4.33571036389978e-11" "1" "0.00130332216820676" "phylloquinone biosynthesis" "LitPath" "10" "5.41671885819557e-05" "1" "0.17847771892727" "phylloquinone biosynthesis, salicylic acid biosynthesis" "LitPath" "10" "0" "1" "0" "plastochinone and phylloquinone biosynthesis" "LitPath" "10" "4.48959750079088e-08" "1" "0.0584176309239764" "systemic acquired resistance, salicylic acid mediated signaling pathway" "TAIR-GO" "9.5" "1.09468003938554e-11" "2" "4.54055126213617e-05" "arabinose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "calcium ion transport" "TAIR-GO" "9" "2.39580281263174e-11" "1" "0.00129043782971725" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "9" "0.00220826933213980" "1" "0.136107548892822" "metal ion transport" "TAIR-GO" "9" "0" "1" "0" "mRNA processing" "TAIR-GO" "9" "0" "1" "0" "N-terminal protein myristoylation" "TAIR-GO" "9" "0.000271726528917217" "1" "0.0574543154513271" "nucleotide metabolism" "TAIR-GO" "9" "1.77736137924947e-10" "1" "0.00378050246390903" "phosphorylation" "TAIR-GO" "9" "0" "1" "0" "protein amino acid phosphorylation" "TAIR-GO" "9" "5.26447874869152e-07" "1" "0.0120196819369716" "RNA processing" "TAIR-GO" "9" "0" "1" "0" "asparagine degradation I" "AraCyc" "9" "6.64524654161171e-05" "1" "0.0605239525775896" "phenylalanine degradation I" "AraCyc" "9" "0.00229556250748242" "1" "0.164695698111282" "TCA cycle variation IV" "AraCyc" "9" "0.045828859835782" "1" "0.345008168134865" "Membrane Transport" "KEGG" "9" "0.000301890354641853" "1" "0.196674438157629" "Other ion-coupled transporters" "KEGG" "9" "7.80110803990975e-06" "1" "0.071212494261594" "response to ethylene stimulus" "TAIR-GO" "8" "2.57351982090767e-05" "2" "0.0123926165715015" "alanine biosynthesis II" "AraCyc" "8" "0.00207450724042308" "2" "0.0287220137217411" "phenylalanine biosynthesis II" "AraCyc" "8" "0.000559042496172819" "2" "0.0203865559559171" "transport " "FunCat" "8" "3.40624020193656e-11" "3" "0" "disease, virulence and defense " "FunCat" "7" "2.05600931042421e-06" "1" "0.0575525897534944" "resistance proteins " "FunCat" "7" "0" "1" "0" "MUTANT DATA SET" "quantDE" "0" "maxDE" "8.263560094" "MUTANT DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "307.5" "6.00822129876175e-31" "81" "1.53641970373326e-08" "C-compound and carbohydrate metabolism" "FunCat" "165" "8.4500830621107e-06" "41" "0.0157998536439587" "Ribosome" "KEGG" "137" "0.0257841268507407" "27" "0.386668151737288" "Phenylpropanoid Metabolism" "BioPath" "133" "0.00341516332675807" "27" "0.205772172206433" "pectin metabolism" "BioPath" "118.5" "1.81221214943377e-22" "50" "6.93939717549995e-11" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "82" "4.60843999707723e-06" "13" "0.0466864733183945" "Lipid signaling" "AcylLipid" "75" "0.00449752312754645" "16" "0.281446441073344" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "72" "5.75511816958094e-17" "12" "0.00134457286025328" "terpenoid metabolism" "LitPath" "72" "8.35542126788495e-17" "12" "0.00191591776330044" "Nucleotide Metabolism" "KEGG" "71" "1.04040186117889e-11" "14" "0.00999062150510528" "Starch and sucrose metabolism" "KEGG" "69" "8.80998117325386e-08" "14" "0.00883127811231122" "cellulose biosynthesis" "BioPath" "66" "1.81582710497279e-12" "11" "0.0167719222234507" "transport " "FunCat" "64" "0" "16" "0" "Biosynthesis of prenyl diphosphates" "BioPath" "60" "1.45753146489397e-05" "9" "0.075111725650789" "Purine metabolism" "KEGG" "59" "2.28278608835516e-09" "11" "0.0182510218036245" "Biosynthesis of steroids" "KEGG" "57" "1.3577587724323e-06" "9" "0.0172232845625987" "biogenesis of cell wall" "FunCat" "54" "1.66819476050115e-07" "16" "0.000669982486990146" "Pyruvate metabolism" "KEGG" "53" "0.00107704779986531" "9" "0.208737774905870" "transport facilitation" "FunCat" "50" "0" "14" "0" "lipases pathway" "AraCyc" "47" "5.84567155744825e-15" "7" "0.00566435676574145" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "46" "3.88446529333421e-06" "5" "0.284681632027156" "sorbitol fermentation" "AraCyc" "44" "0.00182022641933292" "11" "0.0579102229440154" "lactose degradation IV" "AraCyc" "43" "0" "10" "0" "Translation factors" "KEGG" "41" "0.00543221787964153" "15" "0.0139416412117756" "Pyrimidine metabolism" "KEGG" "40" "6.18211136768943e-09" "9" "0.00629347150618306" "Flavonoid and anthocyanin metabolism" "BioPath" "39" "0.000117088915517628" "11" "0.0707506670356326" "starch metabolism" "BioPath" "37" "5.8614279088363e-05" "5" "0.230954344538364" "trans-zeatin biosynthesis" "AraCyc" "36" "8.23476753598781e-32" "7" "2.24932231140291e-08" "nucleotide metabolism" "FunCat" "36" "0" "8" "0" "Citrate cycle (TCA cycle)" "KEGG" "36" "8.77450250279628e-05" "6" "0.126273440418097" "lipid, fatty acid and isoprenoid degradation" "FunCat" "35" "2.93797591100097e-09" "5" "0.0836535723922657" "alanine biosynthesis II" "AraCyc" "34" "1.0205723220307e-09" "5" "0.0520789928316134" "cellulose biosynthesis" "AraCyc" "34" "0.00347098429155314" "6" "0.213154021058002" "phenylalanine biosynthesis II" "AraCyc" "34" "2.84421099784006e-12" "5" "0.0291766874093331" "TCA cycle -- aerobic respiration" "AraCyc" "34" "0.00627948832739531" "8" "0.071370935254751" "TCA cycle variation IV" "AraCyc" "34" "0.00436513392023876" "8" "0.0565234124125661" "TCA cycle variation VIII" "AraCyc" "34" "0.0221809653182342" "8" "0.0884317046269896" "intracellular signalling" "FunCat" "32.5" "0.00202330023134272" "8" "0.179655788812208" "triacylglycerol degradation" "AraCyc" "32" "1.81722379110182e-07" "15" "0.000127658350502259" "C-compound, carbohydrate catabolism" "FunCat" "32" "4.34040564210265e-06" "8" "0.0410492155697645" "energy" "FunCat" "32" "0" "7" "0" "secondary metabolism" "FunCat" "32" "0.0422504158457786" "10" "0.0800146426790794" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "30" "0.0143584077278114" "4" "0.407483757661335" "aromatic amino acid family biosynthesis" "TAIR-GO" "30" "4.64131194286367e-13" "3" "0.00873392839032824" "dTDP-rhamnose biosynthesis" "AraCyc" "30" "0.00123306107426625" "6" "0.196684180498733" "mixed acid fermentation" "AraCyc" "30" "0.0005426175837877" "6" "0.087210176967594" "trehalose biosynthesis III" "AraCyc" "30" "3.47145979386640e-05" "8" "0.0065551787700061" "transcription" "FunCat" "30" "6.4169058482119e-18" "8" "4.02647079260255e-06" "galactose degradation I" "AraCyc" "29" "0" "6" "2.04698601215799e-07" "Protein export" "KEGG" "29" "1.27993363368545e-06" "8" "0.00192395299483924" "ascorbic acid biosynthesis" "BioPath" "28" "0.000105402217141193" "4" "0.157014082481268" "hemicellulose biosynthesis" "BioPath" "28" "7.28995883671282e-06" "3" "0.172890625571677" "RNA synthesis " "FunCat" "28" "2.18502606042535e-06" "7" "0.00912304829303533" "Terpenoid biosynthesis" "KEGG" "28" "1.28252502935960e-05" "4" "0.070200068246703" "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" "28" "0.00916250228819319" "4" "0.116801657921570" "proanthocyanidin biosynthesis" "TAIR-GO" "26" "0" "3" "0" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "25" "2.20471647045455e-14" "4" "0.000291852216249771" "Cyanoamino acid metabolism" "KEGG" "25" "3.23684452094111e-06" "6" "0.0112689818101880" "aspartate/ornithin cycle / nitric oxid from glutamate" "BioPath" "24" "1.00166079399844e-08" "4" "0.0346849027058786" "biosynthesis of pyrimidine ribonucleotides" "AraCyc" "24" "5.48346713972586e-06" "5" "0.0358865007167504" "de novo biosynthesis of pyrimidine ribonucleotides" "AraCyc" "24" "3.60171494834687e-06" "5" "0.0291766874093331" "degradation " "FunCat" "24" "9.71571002629234e-05" "5" "0.0717330470465701" "mevalonate pathway, cytosol" "LitPath" "24" "0.00155188132551810" "3" "0.120244828049658" "gibberellin biosynthesis" "AraCyc" "23" "2.68815851483156e-06" "5" "0.00095064157481851" "de novo biosynthesis of purine nucleotides II" "AraCyc" "22" "0.00220820123393177" "5" "0.188354608148730" "sucrose degradation III" "AraCyc" "22" "4.87883578882695e-06" "5" "0.00557844396413331" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "22" "0" "6" "0" "starch biosynthesis" "AraCyc" "21" "0" "3" "0" "C-compound and carbohydrate utilization " "FunCat" "21" "0" "6" "0" "Chloroplastic protein import via envelope membrane" "BioPath" "20" "0.00144675641432858" "5" "0.038453475544208" "GDP-carbohydrate biosynthesis" "BioPath" "20" "1.31721357160501e-06" "3" "0.0388636047870981" "Thylakoid biogenesis and photosystem assembly" "BioPath" "20" "7.02007612493565e-06" "2" "0.0607590762738435" "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" "20" "1.03956780783122e-07" "2" "0.0340901855808512" "(deoxy)ribose phosphate degradation" "AraCyc" "20" "7.9371915837539e-08" "4" "0.00438271313633371" "sucrose biosynthesis" "AraCyc" "20" "0.00352257022011143" "4" "0.0634408161975640" "tryptophan biosynthesis" "AraCyc" "20" "0.046852989025687" "4" "0.156149103395897" "tyrosine biosynthesis I" "AraCyc" "20" "5.07699599612197e-09" "2" "0.0692433404437301" "pyrimidine nucleotide metabolism" "FunCat" "20" "5.32978951667814e-06" "4" "0.0386440792761450" "Glycerophospholipid metabolism" "KEGG" "20" "0.0128236714634213" "4" "0.0824070790135228" "Ligand-Receptor Interaction" "KEGG" "20" "0.0128236714634213" "10" "0.0135347639651715" "sequiterpene biosynthesis" "LitPath" "20" "0" "2" "0" "brassinosteroid biosynthesis" "TAIR-GO" "19" "7.19096193070255e-06" "2" "0.0340901855808512" "steroid biosynthesis" "TAIR-GO" "19" "7.19096193070255e-06" "2" "0.0340901855808512" "response to light" "TAIR-GO" "18" "0.0206024119753083" "3" "0.194325262480129" "abscisic acid biosynthesis" "AraCyc" "18" "2.49441491902928e-12" "3" "0.000694669515408167" "ascorbate glutathione cycle" "AraCyc" "18" "0.0031346310130212" "3" "0.0937491036049779" "formylTHF biosynthesis" "AraCyc" "18" "0.000923147992835286" "4" "0.0421625402575694" "leucine biosynthesis" "AraCyc" "18" "2.12985448020198e-05" "3" "0.0937491036049779" "non-phosphorylated glucose degradation" "AraCyc" "18" "0.00563677007824853" "5" "0.138508881436943" "stress response" "FunCat" "18" "0" "3" "0" "DNA polymerase" "KEGG" "18" "9.16208165484409e-09" "5" "0.00389216744525702" "Folate biosynthesis" "KEGG" "18" "2.83172429326888e-05" "4" "0.0194916925528496" "Ion channels" "KEGG" "18" "0.0339331907150427" "9" "0.0262361796970323" "abscisic acid biosynthesis" "LitPath" "18" "9.75480673777496e-05" "3" "0.0396357236652083" "defense response" "TAIR-GO" "17" "0.0113248149717809" "2" "0.123431461021042" "peptidoglycan biosynthesis" "AraCyc" "17" "1.12206542970472e-09" "4" "0.000707104432609883" "plant / fungal specific systemic sensing and response " "FunCat" "17" "0.0424959600982384" "3" "0.170060521195288" "plant hormonal regulation" "FunCat" "17" "0.0424959600982384" "3" "0.170060521195288" "cytokinin biosynthesis" "TAIR-GO" "16" "3.13062061196124e-13" "2" "0.000895466255359965" "tryptophan biosynthesis" "TAIR-GO" "16" "0.00337028242347956" "2" "0.0841212617737255" "detoxification" "FunCat" "16" "0" "6" "0" "Basal transcription factors" "KEGG" "16" "0.0224713707311676" "6" "0.0641248734179522" "Prolin/Hydroxyproline from glutamate" "BioPath" "14" "0.000776344495117668" "3" "0.0388636047870981" "jasmonic acid biosynthesis" "TAIR-GO" "14" "0.0219512322244047" "2" "0.10966483160568" "ureide biosynthesis" "AraCyc" "14" "8.01399676400116e-08" "3" "0.0121329510439537" "brassinosteroid modulation" "LitPath" "14" "2.98637378136498e-05" "6" "0.00358101737912653" "gibberellic acid biosynthesis" "TAIR-GO" "13" "0.00349733799440192" "2" "0.0267576439494878" "cell growth / morphogenesis " "FunCat" "13" "6.34987294570421e-08" "2" "0.012895297643103" "second messenger mediated signal transduction" "FunCat" "13" "3.53610616975149e-10" "2" "0.00564178915639946" "tRNA synthesis " "FunCat" "13" "1.26108286070806e-06" "2" "0.0377931142205331" "Tic apparatus" "BioPath" "12" "1.47112490180504e-05" "3" "0.0162718033271775" "trehalose metabolism" "BioPath" "12" "0.00152972120803072" "3" "0.0944864734411156" "abscisic acid biosynthesis" "TAIR-GO" "12" "0.000383726312654409" "2" "0.0203688083903055" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "12" "0.0202994040900197" "2" "0.0965441518964114" "anthocyanin biosynthesis" "AraCyc" "12" "0.00177733720503799" "2" "0.115185829509155" "folate biosynthesis" "AraCyc" "12" "0.00577698141054915" "3" "0.0615182896175834" "galactokinase, colanic acid building blocks biosynthesis" "AraCyc" "12" "1.08587529111899e-06" "2" "0.0341477730373899" "galactokinase, galactose degradation I" "AraCyc" "12" "1.08587529111899e-06" "2" "0.0341477730373899" "galactokinase, lactose degradation IV" "AraCyc" "12" "1.08587529111899e-06" "2" "0.0341477730373899" "histidine biosynthesis I" "AraCyc" "12" "0.0394715046979416" "2" "0.229475970972200" "sugar, glucoside, polyol and carboxylate catabolism " "FunCat" "12" "0.0056051927953719" "3" "0.0860416671287113" "Aminosugars metabolism" "KEGG" "12" "0.0218290479117567" "3" "0.166854624634257" "response to UV" "TAIR-GO" "11" "0.0317380330641587" "2" "0.0423525431012967" "general transcription activities" "FunCat" "11" "0.00547778341248467" "4" "0.0167255933441895" "N-Glycan biosynthesis" "KEGG" "11" "0.0463395687017391" "2" "0.285191072361186" "Thiamine metabolism" "KEGG" "11" "5.61952842303136e-05" "2" "0.0417685388234341" "Lysin from aspartate" "BioPath" "10" "9.701443142931e-05" "1" "0.144989831028746" "salycilic acid biosynthesis" "BioPath" "10" "0.000694724350320881" "1" "0.0955983609584067" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "10" "0.0385551559933488" "1" "0.19816916223406" "acyl-CoA binding" "TAIR-GO" "10" "2.42503781565514e-09" "1" "0.00383288596424267" "anther dehiscence" "TAIR-GO" "10" "0" "1" "0" "anthranilate synthase complex" "TAIR-GO" "10" "5.08613052936211e-09" "1" "0.00383288596424267" "aromatic amino acid family biosynthesis, anthranilate pathway" "TAIR-GO" "10" "0" "1" "0" "cell death" "TAIR-GO" "10" "2.21289956870933e-05" "1" "0.0211636622466506" "cytochrome b6f complex" "TAIR-GO" "10" "3.65378284930615e-05" "1" "0.0487319019830521" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "defense response to pathogenic bacteria, incompatible interaction" "TAIR-GO" "10" "2.21289956870933e-05" "1" "0.0338480973080709" "gibberellic acid catabolism" "TAIR-GO" "10" "0.000111688985912086" "1" "0.0338480973080709" "glucosinolate biosynthesis" "TAIR-GO" "10" "0.0103818781307569" "1" "0.083856927006385" "hypersensitive response" "TAIR-GO" "10" "0.000291210836213581" "1" "0.0487319019830521" "indoleacetic acid biosynthesis" "TAIR-GO" "10" "3.65378284930615e-05" "1" "0.0338480973080709" "isoprenoid biosynthesis" "TAIR-GO" "10" "0.000201834137173676" "1" "0.0338480973080709" "lipid transport" "TAIR-GO" "10" "0.000166673795538597" "1" "0.0654972872796941" "microtubule cytoskeleton" "TAIR-GO" "10" "0" "1" "0" "monoterpenoid biosynthesis" "TAIR-GO" "10" "1.69903461313411e-05" "1" "0.0211636622466506" "oxygen binding" "TAIR-GO" "10" "5.08613052936211e-09" "1" "0.00383288596424267" "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" "TAIR-GO" "10" "1.66723355631665e-10" "1" "0.00383288596424267" "pollen maturation" "TAIR-GO" "10" "0" "1" "0" "porphyrin biosynthesis" "TAIR-GO" "10" "0.0235982924681923" "2" "0.0423525431012967" "programmed cell death" "TAIR-GO" "10" "0" "1" "0" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "response to biotic stimulus" "TAIR-GO" "10" "0" "1" "0" "response to hypoxia" "TAIR-GO" "10" "1.66723355631665e-10" "1" "0.00383288596424267" "response to pathogenic bacteria" "TAIR-GO" "10" "2.21289956870933e-05" "1" "0.0338480973080709" "starch biosynthesis" "TAIR-GO" "10" "0.00233947666919280" "1" "0.0654972872796941" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "0.00172687441805578" "1" "0.063821470467403" "methylglyoxal degradation" "AraCyc" "10" "0.0166293548978510" "2" "0.198937425814575" "monoterpene biosynthesis" "AraCyc" "10" "7.42411654696872e-05" "1" "0.0344338400701214" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "10" "0.0190126417858504" "2" "0.169490468058077" "oxidative branch of the pentose phosphate pathway" "AraCyc" "10" "0.0190126417858504" "2" "0.169490468058077" "plant monoterpene biosynthesis" "AraCyc" "10" "4.27260520478761e-07" "1" "0.0123951885739925" "triacylglycerol biosynthesis" "AraCyc" "10" "0.0144764272110498" "1" "0.137356836187721" "tyrosine degradation" "AraCyc" "10" "0.00789572146480057" "1" "0.308423917787994" "biosynthesis of derivatives of dehydroquinic acid, shikimic acid and chorismic acid" "FunCat" "10" "4.30297528945711e-10" "1" "0.0685189992138406" "biosynthesis of lysine" "FunCat" "10" "2.98160242091219e-06" "1" "0.105601466927666" "electron transport and membrane-associated energy conservation " "FunCat" "10" "0.00367182231793663" "1" "0.280448956803323" "metabolism of the aspartate family" "FunCat" "10" "0.00136187956908263" "1" "0.23504612465135" "Lysine biosynthesis" "KEGG" "10" "0.0167885834413488" "1" "0.358419318261808" "One carbon pool by folate" "KEGG" "10" "0.0149473107068086" "2" "0.171189346591607" "giberelin catabolism" "LitPath" "10" "5.55386249222781e-05" "1" "0.0325960874268510" "Phe/Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "Tyr biosynthesis" "LitPath" "10" "0" "1" "0" "brassinosteroid metabolism" "TAIR-GO" "9" "4.87406448371008e-11" "1" "0.00383288596424267" "cellular response to sulfate starvation" "TAIR-GO" "9" "4.56306628871557e-08" "1" "0.00383288596424267" "glucosinolate catabolism" "TAIR-GO" "9" "4.56306628871557e-08" "1" "0.00383288596424267" "glycolysis" "TAIR-GO" "9" "4.56306628871557e-08" "1" "0.00383288596424267" "methylglyoxal catabolism" "TAIR-GO" "9" "2.28908602179449e-08" "1" "0.00383288596424267" "pollen germination" "TAIR-GO" "9" "2.63601247800031e-06" "1" "0.0110295642510053" "brassinosteroid degradation" "LitPath" "9" "4.08611564174937e-07" "1" "0.0325960874268510" "Protein prenylation" "BioPath" "8" "0.0265334386383172" "3" "0.00912729174381642" "Sequestration of phenylpropanoids (cytosol --> vacuole)" "BioPath" "8" "1.24939566648300e-05" "1" "0.0193148321046783" "chloroplast organization and biogenesis" "TAIR-GO" "8" "3.15918943342923e-05" "2" "0.00408048795810859" "fatty acid elongation" "TAIR-GO" "8" "0.00156198339872260" "1" "0.0654972872796941" "L-ascorbic acid biosynthesis" "TAIR-GO" "8" "2.02463782980844e-08" "1" "0.00383288596424267" "maintenance of dormancy" "TAIR-GO" "8" "0" "1" "0" "regulation of cell shape" "TAIR-GO" "8" "0" "1" "0" "wax biosynthesis" "TAIR-GO" "8" "0.00643323222212463" "1" "0.0654972872796941" "coenzyme A biosynthesis" "AraCyc" "8" "1.96735167501697e-07" "2" "0.0050462096728397" "amino acid detoxification" "FunCat" "8" "0" "1" "0" "protein folding and stabilization " "FunCat" "8" "1.55258367513696e-05" "2" "0.012895297643103" "transported compounds (substrates)" "FunCat" "8" "0" "2" "0" "calcium-mediated signaling" "TAIR-GO" "7" "5.43713666249110e-06" "1" "0.0110295642510053" "histone acetylation" "TAIR-GO" "7" "0" "1" "0" "iron-sulfur cluster assembly" "TAIR-GO" "7" "0" "1" "0" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "0.0476353905307271" "1" "0.083856927006385" "photoreactive repair" "TAIR-GO" "7" "4.66997607540138e-07" "1" "0.00383288596424267" "polysaccharide biosynthesis" "TAIR-GO" "7" "0" "1" "0" "response to pathogenic fungi" "TAIR-GO" "7" "0.000166922172834493" "1" "0.0110295642510053" "secondary metabolism" "TAIR-GO" "7" "0" "1" "0" "transcription factor TFIID complex" "TAIR-GO" "7" "0" "1" "0" "mannosyl-chito-dolichol biosynthesis" "AraCyc" "7" "7.08512017345332e-05" "1" "0.0344338400701214" "cytoskeleton" "FunCat" "7" "0" "1" "0" "directional cell growth (morphogenesis)" "FunCat" "7" "9.43322334065105e-07" "1" "0.03708039418512" "RNA modification " "FunCat" "7" "1.31483705038515e-05" "1" "0.0133891868613710" "tRNA modification " "FunCat" "7" "0" "1" "0"