"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN TWO DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "transport " "FunCat" "172" "34" "" "" "Glycolysis / Gluconeogenesis" "KEGG" "117" "22" "" "" "transport facilitation" "FunCat" "110" "21" "" "" "Citrate cycle (TCA cycle)" "KEGG" "80" "13" "" "" "nucleotide metabolism" "FunCat" "76" "17" "" "" "Glycerolipid metabolism" "KEGG" "73" "10" "" "" "TCA cycle -- aerobic respiration" "AraCyc" "68" "12" "" "" "TCA cycle variation VIII" "AraCyc" "68" "12" "" "" "Carotenoid and abscisic acid metabolism" "LitPath" "65" "9" "" "" "energy" "FunCat" "61" "13" "" "" "mixed acid fermentation" "AraCyc" "50" "11" "" "" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "44" "5" "" "" "plant / fungal specific systemic sensing and response " "FunCat" "42" "5" "" "" "plant hormonal regulation" "FunCat" "42" "5" "" "" "C-compound and carbohydrate utilization " "FunCat" "31" "9" "" "" "transcription" "FunCat" "30" "7" "" "" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "27" "6" "" "" "abscisic acid biosynthesis" "AraCyc" "24" "4" "" "" "abscisic acid biosynthesis" "AraCyc" "24" "4" "" "" "monoterpene biosynthesis" "AraCyc" "20" "2" "" "" "diterpene biosynthesis" "LitPath" "20" "2" "" "" "monoterpene biosynthesis" "AraCyc" "20" "2" "" "" "flavonoid biosynthesis" "AraCyc" "18" "4" "" "" "flavonoid biosynthesis" "AraCyc" "18" "4" "" "" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "15" "2" "" "" "ORGAN DATA SET" "quantDE" "0" "maxDE" "0" "ORGAN DATA SET" "STRESS DATA SET" "quantDE" "0" "maxDE" "0" "STRESS DATA SET" "HORMONE DATA SET" "quantDE" "0" "maxDE" "0.4150375" "HORMONE DATA SET" "Cell Wall Carbohydrate Metabolism" "BioPath" "132" "2.13888547750120e-34" "41" "4.07511481872848e-10" "pectin metabolism" "BioPath" "72" "6.38808484867507e-36" "29" "1.78702176403720e-12" "Ribosome" "KEGG" "44" "0.0303273656063216" "8" "0.415828324876378" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "32" "5.45512273979697e-13" "5" "0.00614458025342074" "terpenoid metabolism" "LitPath" "32" "6.44699167582711e-13" "5" "0.00724284589855753" "Fructose and mannose metabolism" "KEGG" "30" "4.86016102103074e-13" "5" "0.0030489930824883" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "27" "8.42625770298873e-10" "9" "0.000356261932761624" "cellulose biosynthesis" "BioPath" "26" "3.46389255118412e-09" "5" "0.0181183800122646" "nucleotide metabolism" "FunCat" "24" "0" "6" "0" "Miscellaneous acyl lipid metabolism" "AcylLipid" "22" "0.0278984634838701" "9" "0.15955423523883" "(deoxy)ribose phosphate degradation" "AraCyc" "20" "1.25754282934379e-20" "4" "4.2341387903169e-06" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "20" "2.42431675675476e-11" "2" "0.0242037183777829" "pyrimidine nucleotide metabolism" "FunCat" "20" "2.00178738077454e-14" "4" "0.000556201569635715" "Glycolysis / Gluconeogenesis" "KEGG" "20" "0.00138827671032559" "5" "0.034763462662979" "Nucleotide Metabolism" "KEGG" "20" "0.000275182952627659" "4" "0.0932143416584376" "Pyrimidine metabolism" "KEGG" "20" "4.27950916361768e-09" "4" "0.00814306169441358" "Flavonoid and anthocyanin metabolism" "BioPath" "19" "1.30665165562581e-06" "5" "0.0439128204709383" "biogenesis of cell wall" "FunCat" "18" "0.00213441075537122" "7" "0.00548356505643176" "transport " "FunCat" "18" "0" "5" "0" "Starch and sucrose metabolism" "KEGG" "18" "0.00970209681424815" "6" "0.00924026403211805" "hemicellulose biosynthesis" "BioPath" "16" "1.97830287387803e-08" "2" "0.0372578838670798" "acetate fermentation" "AraCyc" "16" "0.000201965226988816" "4" "0.0299154086337013" "fructose degradation (anaerobic)" "AraCyc" "16" "9.99444640227844e-05" "4" "0.022302629057196" "glycerol degradation II" "AraCyc" "16" "2.61986767055807e-06" "4" "0.00557876508303786" "glycolysis IV" "AraCyc" "16" "0.000109505770473885" "4" "0.0237110064680969" "non-phosphorylated glucose degradation" "AraCyc" "16" "7.28207741996425e-11" "4" "0.00119861661081867" "sorbitol fermentation" "AraCyc" "16" "0.000219597966381463" "4" "0.0266977141057537" "Glycan Biosynthesis and Metabolism" "KEGG" "16" "0.00159708541173055" "2" "0.325074823231176" "Glycerolipid metabolism" "KEGG" "16" "2.17999892396628e-05" "2" "0.0861338275515695" "gibberellin biosynthesis" "AraCyc" "14" "5.59081021273218e-10" "2" "0.00309575901518353" "C-compound, carbohydrate catabolism" "FunCat" "14" "0.000120448138378999" "3" "0.0972298242727056" "plant / fungal specific systemic sensing and response " "FunCat" "14" "1.03449282726061e-05" "2" "0.0455026274970183" "plant hormonal regulation" "FunCat" "14" "1.03449282726061e-05" "2" "0.0455026274970183" "transport facilitation" "FunCat" "14" "0" "4" "0" "Galactose metabolism" "KEGG" "14" "6.06850410235486e-05" "3" "0.0158566980097210" "Ligand-Receptor Interaction" "KEGG" "14" "3.21525832252106e-06" "6" "0.00101280101342073" "Nitrogen metabolism" "KEGG" "13" "0.00403536806773649" "2" "0.0800890721413031" "abscisic acid biosynthesis" "AraCyc" "12" "2.35260016501487e-14" "2" "0.000160588302955609" "mixed acid fermentation" "AraCyc" "12" "8.08296783242124e-05" "3" "0.0118304848472733" "TCA cycle -- aerobic respiration" "AraCyc" "12" "0.00148291890631463" "2" "0.119869594130759" "TCA cycle variation IV" "AraCyc" "12" "0.00120788219720765" "2" "0.108741904386140" "TCA cycle variation VII" "AraCyc" "12" "0.048054137104923" "2" "0.269655847130723" "TCA cycle variation VIII" "AraCyc" "12" "0.00315372024506968" "2" "0.131401081840642" "Citrate cycle (TCA cycle)" "KEGG" "12" "0.00391034836206034" "2" "0.140719327768636" "Ion channels" "KEGG" "12" "4.9234884562787e-05" "5" "0.00421129294545303" "Purine metabolism" "KEGG" "12" "0.0468836005745011" "3" "0.122635343623459" "abscisic acid biosynthesis" "LitPath" "12" "1.48327091993329e-07" "2" "0.00804149503321021" "Carotenoid and abscisic acid metabolism" "LitPath" "12" "0.0184984206545877" "2" "0.113658468058932" "flavonoid biosynthesis" "AraCyc" "11" "1.97782110128043e-05" "3" "0.00464151332739169" "C-compound, carbohydrate anabolism" "FunCat" "11" "2.38945769422757e-05" "3" "0.00765850974916451" "transcription" "FunCat" "11" "1.73265413558226e-07" "3" "0.00233819861483387" "trehalose metabolism" "BioPath" "10" "8.3661887243579e-08" "2" "0.0211071570553158" "gibberellic acid biosynthesis" "TAIR-GO" "10" "6.58027416318991e-08" "1" "0.00996934063077562" "gibberellic acid mediated signaling" "TAIR-GO" "10" "3.03891339126092e-11" "1" "0.00191136492483288" "glucosinolate biosynthesis" "TAIR-GO" "10" "6.09031154243456e-09" "1" "0.00521157027529579" "monoterpenoid biosynthesis" "TAIR-GO" "10" "1.54252034655461e-12" "1" "0.00115703093657462" "oxygen binding" "TAIR-GO" "10" "1.91284784596766e-16" "1" "0.000196291951562624" "response to wounding" "TAIR-GO" "10" "1.81515110622546e-05" "1" "0.0380149723167368" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "7.61507548029249e-10" "1" "0.00382238260865478" "monoterpene biosynthesis" "AraCyc" "10" "1.42093337514404e-11" "1" "0.00194392356989012" "serine-isocitrate lyase pathway" "AraCyc" "10" "0.01526642682726" "2" "0.108741904386140" "trehalose biosynthesis II" "AraCyc" "10" "0.0161728239269088" "2" "0.161806336574189" "trehalose biosynthesis III" "AraCyc" "10" "0.000344296574789559" "2" "0.0481413394323022" "energy" "FunCat" "10" "1.15139749729759e-12" "2" "7.78316544612481e-05" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "2" "0" "Diterpenoid biosynthesis" "KEGG" "10" "0.000192695553561609" "1" "0.0539162286258063" "diterpene biosynthesis" "LitPath" "10" "1.20280601180053e-10" "1" "0.00321920575547070" "Gibberellin metabolism" "LitPath" "10" "0.0347975635492292" "1" "0.254793888722249" "monoterpene biosynthesis" "LitPath" "10" "6.68078468711438e-06" "1" "0.0288118797878323" "sequiterpene biosynthesis" "LitPath" "10" "1.20280601180053e-10" "1" "0.00321920575547070" "gibberellic acid catabolism" "TAIR-GO" "9" "3.52416434384670e-10" "1" "0.00191136492483288" "RNA synthesis " "FunCat" "9" "0.0059446916407968" "2" "0.107405620169701" "Flavonoid biosynthesis" "KEGG" "9" "8.1038608471895e-05" "3" "0.00132568727500053" "UDP-carbohydrate metabolism" "BioPath" "8" "0.0115333382746304" "2" "0.0834638152011442" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "8" "6.9109153249726e-13" "1" "0.000583670764692331" "proanthocyanidin biosynthesis" "TAIR-GO" "8" "2.16226607058211e-11" "1" "0.000583670764692331" "biosynthesis of proto- and siroheme" "AraCyc" "8" "0.0406609859338491" "2" "0.0878114351299068" "trans-zeatin biosynthesis" "AraCyc" "8" "2.88389865874687e-07" "2" "0.000849688621170038" "triacylglycerol degradation" "AraCyc" "8" "0.00184545741611061" "3" "0.0466004284488734" "C-compound and carbohydrate utilization " "FunCat" "8" "7.36631541729453e-11" "3" "0" "Aminosugars metabolism" "KEGG" "8" "0.000183146315603324" "2" "0.0275915467822935" "Glyoxylate and dicarboxylate metabolism" "KEGG" "8" "0.0190717752882293" "2" "0.0579130149055395" "Streptomycin biosynthesis" "KEGG" "8" "0.000183146315603324" "2" "0.00713965614413598" "cytokinin biosynthesis" "TAIR-GO" "7" "4.13220770706525e-09" "1" "0.00115703093657462" "flavonoid biosynthesis" "TAIR-GO" "7" "6.4968405391355e-07" "1" "0.00394340438958177" "iron-sulfur cluster assembly" "TAIR-GO" "7" "0" "1" "0" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "1.81707056859406e-06" "1" "0.00521157027529579" "RNA modification " "FunCat" "7" "3.31311510915123e-09" "1" "0.00183611948479035" "tRNA modification " "FunCat" "7" "0" "1" "0" "tRNA synthesis " "FunCat" "7" "1.11908265635586e-05" "1" "0.0334429019895858" "triterpene biosynthesis" "LitPath" "7" "0.0107318811451758" "1" "0.108076903664888" "MUTANT DATA SET" "quantDE" "0" "maxDE" "0.055839036" "MUTANT DATA SET" "C-compound and carbohydrate metabolism" "FunCat" "240" "0.0164306129296682" "46" "0.150091360373308" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "217" "3.88508009072785e-21" "28" "1.64502539545382e-05" "Intermediary Carbon Metabolism" "BioPath" "188" "0.000335474883820002" "34" "0.0233382275916458" "transport " "FunCat" "154" "0" "29" "0" "Photosystems " "BioPath" "150" "0.00999902899397602" "19" "0.254296341665574" "biogenesis of chloroplast" "FunCat" "140" "9.47190006324208e-21" "21" "5.49106491428802e-05" "protein synthesis" "FunCat" "120" "0.0410728627948863" "25" "0.0636977655896258" "Carbon fixation" "KEGG" "110" "1.56065103337800e-08" "19" "0.00321807821232806" "Isoprenoid Biosynthesis in the Cytosol and in Mitochondria" "BioPath" "102" "0.0206881045754269" "12" "0.205542540328971" "Pyruvate metabolism" "KEGG" "102" "0.000827652184400113" "16" "0.0779702026355381" "Chlorophyll biosynthesis and breakdown" "BioPath" "100" "1.16654318459543e-13" "12" "0.00107544353743184" "chlorophyll and phytochromobilin metabolism" "LitPath" "100" "1.70348190945888e-14" "12" "0.00137886345285040" "Glycolysis / Gluconeogenesis" "KEGG" "97" "0.00545145462797057" "17" "0.0771327283111335" "Glutathione metabolism" "BioPath" "96" "0.00599346993389469" "14" "0.133526723505652" "transport facilitation" "FunCat" "96" "0" "17" "0" "Oxidative phosphorylation" "KEGG" "91" "1.30568076769202e-08" "22" "0.00113974001034602" "photosynthesis" "FunCat" "86" "1.79708626197403e-10" "13" "0.00482629353430934" "Biosynthesis of steroids" "KEGG" "85" "0.00584194976361557" "9" "0.223892879942526" "chlorophyll biosynthesis" "AraCyc" "80" "5.17077433692616e-08" "10" "0.188104604114210" "Sulfur metabolism" "KEGG" "79" "1.06535102713966e-16" "10" "0.000296149471208728" "additional photosystem II components" "BioPath" "72" "0.000586904035996367" "9" "0.08510842692897" "Glutamate metabolism" "KEGG" "71" "0.00390055781538651" "9" "0.164838944408107" "chlorophyll biosynthesis" "TAIR-GO" "70" "3.13359560196020e-20" "7" "0.000820328376214096" "Citrate cycle (TCA cycle)" "KEGG" "68" "9.66116105611288e-06" "11" "0.0301698122217841" "Selenoamino acid metabolism" "KEGG" "68" "3.27337595331676e-07" "8" "0.0491104537229787" "Chlorophyll a/b binding proteins" "BioPath" "66" "4.34596745832476e-13" "8" "0.00138589105057144" "development" "TAIR-GO" "65" "0.00074504817935027" "8" "0.152314865821556" "Porphyrin and chlorophyll metabolism" "KEGG" "64" "2.78045171057757e-06" "7" "0.0661305442591797" "Cysteine metabolism" "KEGG" "63" "9.05790143202229e-09" "9" "0.00850063579896545" "sulfate assimilation III" "AraCyc" "62" "7.85140560855149e-05" "9" "0.0266885929138872" "cysteine biosynthesis I" "AraCyc" "60" "9.6433187318055e-08" "10" "0.0345531140861592" "Shikimate pathway" "LitPath" "58" "0.0473545209590592" "9" "0.120437012808106" "Glycerolipid metabolism" "KEGG" "57" "0.00139433306102514" "8" "0.0839217627600913" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "56" "8.58477661932813e-05" "6" "0.198579730565907" "sterol biosynthesis" "BioPath" "56" "0.000723810015453132" "6" "0.112228457668499" "fatty acid biosynthesis" "TAIR-GO" "56" "3.20576957831604e-13" "7" "0.00149714577700688" "Calvin cycle" "AraCyc" "56" "7.37182944548275e-07" "10" "0.02876112532616" "TCA cycle -- aerobic respiration" "AraCyc" "56" "0.000868735482230549" "10" "0.111353050595018" "TCA cycle variation VIII" "AraCyc" "56" "0.00672140918349275" "10" "0.139526934621839" "Ascorbate and aldarate metabolism" "KEGG" "56" "1.94682120643345e-06" "8" "0.0151301037148093" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "55" "8.43150341890682e-05" "10" "0.0274560135698077" "Carotenoid and abscisic acid metabolism" "LitPath" "53" "1.91041295477348e-07" "7" "0.0155489149679137" "nucleotide metabolism" "FunCat" "52" "0" "11" "0" "Pentose phosphate pathway" "KEGG" "52" "0.00495494877266198" "12" "0.0124442368874525" "energy" "FunCat" "51" "0" "11" "0" "sterol biosynthesis" "TAIR-GO" "50" "1.13992096946593e-05" "5" "0.114055611282738" "gluconeogenesis" "AraCyc" "50" "0.0219274909601476" "9" "0.162003960072587" "transported compounds (substrates)" "FunCat" "50" "0" "8" "0" "chlorophyll biosynthesis" "LitPath" "50" "4.9227972984414e-17" "5" "0.00113505979293572" "Alanine and aspartate metabolism" "KEGG" "47" "0.00500960872568632" "6" "0.247162982961093" "Carotenoid biosynthesis" "BioPath" "46" "3.21831725675037e-12" "5" "0.00381903089496291" "growth" "TAIR-GO" "46" "0.00188707494508073" "6" "0.103314488458449" "carotenoid biosynthesis" "AraCyc" "46" "9.6737146660959e-14" "5" "0.00180493943830807" "carotenid biosynthesis" "LitPath" "46" "8.63060524617049e-13" "5" "0.00464157803898443" "Protein folding / chaperonins (chloroplast)" "BioPath" "44" "1.22591696766683e-13" "6" "0.00331294147613093" "Protein folding and associated processing" "KEGG" "43" "1.07536555909804e-05" "7" "0.0540877638832536" "ATP-dependent proteolysis" "TAIR-GO" "42" "1.00217000532011e-25" "9" "1.90988377220271e-07" "chlorophyll binding" "TAIR-GO" "42" "1.39076502433094e-08" "5" "0.0145166177079179" "acetyl-CoA assimilation" "AraCyc" "42" "0.00802986840281444" "7" "0.120027795712292" "leucine biosynthesis" "AraCyc" "42" "5.47294131131948e-18" "8" "0.000233311448915227" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "42" "3.7426638399084e-06" "6" "0.0362325933082067" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "41" "0.0027321842486574" "5" "0.105022034134252" "aerobic respiration" "FunCat" "40" "1.68966023417352e-07" "6" "0.00421069116150172" "nitrogen and sulfur metabolism" "FunCat" "40" "0.00237199349793395" "5" "0.0754990729021742" "respiration" "FunCat" "40" "1.68966023417352e-07" "6" "0.00421069116150172" "Methionine metabolism" "KEGG" "40" "0.000342612415598234" "4" "0.229004462388180" "brassinosteroid biosynthesis" "LitPath" "40" "0.0317003367005286" "4" "0.274492997731952" "sterol and brassinosteroid biosynthesis" "LitPath" "40" "0.000101119950397889" "4" "0.0925537278770992" "degradation " "FunCat" "39" "4.12847815609197e-06" "8" "0.0125504831080050" "stress response" "FunCat" "39" "0" "6" "0" "Chloroplastic protein turnover" "BioPath" "38" "2.16299847726176e-15" "8" "9.59639369779592e-06" "protein folding" "TAIR-GO" "38" "0" "5" "0" "glyoxylate cycle" "AraCyc" "38" "0.00144274834185537" "6" "0.0584246685116481" "mixed acid fermentation" "AraCyc" "38" "0.0188797035760862" "8" "0.0888045911823698" "photorespiration" "AraCyc" "38" "0.000150148552500474" "6" "0.28441291383298" "calmodulin binding" "TAIR-GO" "37" "7.78972139380383e-11" "5" "0.0145166177079179" "threonine degradation" "AraCyc" "37" "1.04522646772613e-12" "10" "0.000108606905526287" "ascorbic acid biosynthesis" "BioPath" "36" "0.00233749402347352" "5" "0.108666602774151" "Butanoate metabolism" "KEGG" "35" "0.0404075927332376" "5" "0.225477404649028" "N-Glycan biosynthesis" "KEGG" "35" "1.36813893198712e-07" "7" "0.00513777198037155" "aerobic respiration -- electron donors reaction list" "AraCyc" "34" "4.3236013926313e-07" "10" "0.000186541336811994" "tryptophan biosynthesis" "AraCyc" "34" "0.0119627017764497" "6" "0.103180810557217" "fatty acid oxidation pathway" "AraCyc" "33" "0.0130996139608000" "4" "0.169215093888076" "Bile acid biosynthesis" "KEGG" "33" "0.000107818306475508" "5" "0.0370025639243506" "protein biosynthesis" "TAIR-GO" "32" "0" "6" "0" "response to UV" "TAIR-GO" "32" "0.000537354709570193" "4" "0.0571664610475469" "electron transport" "TAIR-GO" "31" "0.0473048440137965" "5" "0.114055611282738" "unidimensional cell growth" "TAIR-GO" "31" "0.00115788755102169" "4" "0.0571664610475469" "isoleucine degradation I" "AraCyc" "31" "0.0355952248863979" "5" "0.166484685708164" "isoleucine degradation III" "AraCyc" "31" "1.13938916570418e-08" "5" "0.00597747870286134" "lactose degradation IV" "AraCyc" "31" "0" "8" "0" "leucine degradation I" "AraCyc" "31" "0.0355952248863979" "5" "0.166484685708164" "leucine degradation II" "AraCyc" "31" "1.13938916570418e-08" "5" "0.00597747870286134" "Cyanoamino acid metabolism" "KEGG" "31" "0.0101633118499015" "5" "0.225477404649028" "phenylpropanoid metabolism" "TAIR-GO" "30" "1.34723543022136e-09" "3" "0.0096988732905864" "transport routes " "FunCat" "30" "2.31708273465802e-05" "6" "0.0136781344732874" "Benzoate degradation via hydroxylation" "KEGG" "30" "8.88404056477057e-06" "3" "0.0688654134551313" "Fluorene degradation" "KEGG" "30" "0.00370252945169662" "4" "0.0884862970912213" "gamma-Hexachlorocyclohexane degradation" "KEGG" "30" "0.0319324760054983" "4" "0.137923412935367" "mevalonate pathway, cytosol" "LitPath" "30" "7.31437167400662e-05" "3" "0.0985331117360833" "beta-Alanine metabolism" "KEGG" "29" "0.0462303423928043" "5" "0.100197623259283" "Chloroplastic protein import via envelope membrane" "BioPath" "28" "0.00327976451491322" "6" "0.0234110473907752" "ClpP protease complex " "BioPath" "28" "8.76028640598113e-16" "7" "3.36594386762887e-06" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "28" "0.00622285250229939" "4" "0.0448728154767672" "carotene biosynthesis" "TAIR-GO" "28" "0" "3" "0" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "28" "0" "7" "0" "photorespiration" "TAIR-GO" "28" "1.58242404197202e-17" "4" "0.000147669141052140" "homocysteine and cysteine interconversion" "AraCyc" "28" "1.60324866192293e-08" "4" "0.0122341067884561" "plant / fungal specific systemic sensing and response " "FunCat" "28" "0.032377529936458" "3" "0.337212968509819" "plant hormonal regulation" "FunCat" "28" "0.032377529936458" "3" "0.337212968509819" "regulation of transcription" "TAIR-GO" "27" "0" "3" "0" "protein degradation " "FunCat" "27" "0.000133135994486890" "6" "0.0188424639907735" "Cytochrome b6/f complex" "BioPath" "26" "2.13047036280033e-07" "3" "0.0429439394499686" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "26" "2.02766402198358e-13" "3" "0.000670438728084213" "electron transport and membrane-associated energy conservation " "FunCat" "26" "2.35271051352642e-10" "6" "5.51910896221982e-05" "flower development" "TAIR-GO" "25" "2.2840944525676e-10" "3" "0.00373991995257502" "ascorbate glutathione cycle" "AraCyc" "25" "0.00865683704703151" "5" "0.0295437645503113" "methylglyoxal degradation" "AraCyc" "25" "9.27309198142869e-08" "5" "0.0146537501003610" "Delta-pH pathway" "BioPath" "24" "0" "3" "0" "light harvesting complex" "BioPath" "24" "1.37243079074874e-07" "3" "0.007651702786419" "polyamine biosynthesis III" "AraCyc" "24" "0.000149980871478762" "3" "0.081170168830932" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "24" "0.0477013331147099" "3" "0.191599389048806" "response to pathogenic bacteria" "TAIR-GO" "23" "2.81104493578551e-09" "3" "0.00373991995257502" "valine degradation II" "AraCyc" "23" "0.000146549796568898" "5" "0.0397365146693662" "C-compound and carbohydrate utilization " "FunCat" "23" "0" "6" "0" "photosystem I" "TAIR-GO" "22" "1.51850915442892e-06" "3" "0.0195827580811766" "methionine biosynthesis II" "AraCyc" "22" "0.00698723816782595" "3" "0.136281188462559" "starch biosynthesis" "AraCyc" "22" "0" "3" "0" "superpathway of serine and glycine biosynthesis II" "AraCyc" "22" "0.00499247023283216" "4" "0.260390776700992" "TCA cycle variation II" "AraCyc" "22" "0.0129330334735748" "4" "0.117032893267902" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "22" "0.00456231562926797" "3" "0.158770309980313" "channel / pore class transport" "FunCat" "22" "5.14957593928152e-05" "4" "0.0684903425419573" "proteasome regulatory particle, base subcomplex (sensu Eukaryota)" "TAIR-GO" "21" "0.00251040470160320" "3" "0.0766183517081893" "galactose degradation I" "AraCyc" "21" "1.8131049742987e-12" "6" "2.39272177203226e-06" "Other cell wall metabolism related enzymes" "BioPath" "20" "0" "2" "0" "glutathione biosynthesis" "TAIR-GO" "20" "0" "2" "0" "isoprenoid biosynthesis" "TAIR-GO" "20" "5.26060432154843e-05" "2" "0.0385686681192207" "methionine biosynthesis" "TAIR-GO" "20" "5.5749832813983e-08" "2" "0.0176714192192333" "response to pathogenic fungi" "TAIR-GO" "20" "1.54276646852617e-11" "2" "0.00506744428232586" "cysteine biosynthesis II" "AraCyc" "20" "0.0269118725184914" "4" "0.29305762865514" "glutathione biosynthesis" "AraCyc" "20" "0" "2" "0" "isoleucine biosynthesis I" "AraCyc" "20" "0.00264233210129308" "4" "0.0942986642683325" "methionine degradation I" "AraCyc" "20" "0.00109507747517461" "2" "0.200860389743070" "oxidative branch of the pentose phosphate pathway" "AraCyc" "20" "0.000125053627921654" "6" "0.0017061307270817" "phospholipid desaturation pathway" "AraCyc" "20" "3.26267827370919e-05" "2" "0.0306089877918182" "serine biosynthesis" "AraCyc" "20" "3.18430876169238e-08" "4" "0.00154367618397222" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "20" "1.03049513217070e-05" "2" "0.0838305276409993" "valine biosynthesis" "AraCyc" "20" "0.00264233210129308" "4" "0.0942986642683325" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "20" "0" "3" "0" "glyoxylate cycle" "FunCat" "20" "0" "3" "0" "lipid transport " "FunCat" "20" "2.05610942361716e-10" "3" "0.0235845965022852" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "20" "0.000916235832796763" "2" "0.176955039378281" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "20" "1.43005793256943e-05" "2" "0.0616879852300282" "Androgen and estrogen metabolism" "KEGG" "20" "3.3318930532425e-05" "2" "0.0949334168514302" "phytochromobilin biosynthesis" "LitPath" "20" "0.00288520138965813" "2" "0.0985638931982756" "Tyr biosynthesis" "LitPath" "20" "0" "2" "0" "hypersensitive response" "TAIR-GO" "19" "0.000330161411717809" "2" "0.067438462947855" "detoxification" "FunCat" "19" "0" "4" "0" "transcription" "FunCat" "19" "0.000463454117094371" "4" "0.0520445253028057" "Thylakoid biogenesis and photosystem assembly" "BioPath" "18" "0.0344497832071697" "2" "0.088228549813339" "Translation (chloroplast)" "BioPath" "18" "0.000123398695157250" "3" "0.0155939907174078" "carotenoid biosynthesis" "TAIR-GO" "18" "0.0247433605152730" "2" "0.144972778647112" "chloroplast organization and biogenesis" "TAIR-GO" "18" "6.73792901878873e-09" "3" "0.0096988732905864" "indoleacetic acid biosynthesis" "TAIR-GO" "18" "3.42686996442273e-05" "2" "0.0385686681192207" "photosynthesis light harvesting" "TAIR-GO" "18" "0.00410959870286672" "2" "0.144972778647112" "arginine degradation III" "AraCyc" "18" "0.00228765351456679" "2" "0.158232120005987" "IAA biosynthesis I" "AraCyc" "18" "0.0132429311437135" "2" "0.158232120005987" "electron / hydrogen transport " "FunCat" "17" "3.36133780208812e-06" "3" "0.00654282083169506" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "17" "0" "4" "0" "L-serine biosynthesis" "TAIR-GO" "16" "0" "2" "0" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "4-hydroxyproline degradation" "AraCyc" "16" "0.0129496696890965" "3" "0.081170168830932" "ascorbate biosynthesis" "AraCyc" "16" "0.000590154603918676" "2" "0.158232120005987" "glucose and glucose-1-phosphate degradation" "AraCyc" "16" "0.0129496696890965" "2" "0.338651422557285" "chloroplast transport " "FunCat" "16" "0.0100521150796996" "2" "0.191852421618014" "Limonene and pinene degradation" "KEGG" "16" "4.60110250571653e-08" "3" "0.00855817015658206" "Replication complex" "KEGG" "16" "0.00102581506424819" "4" "0.0240484426242607" "response to abiotic stimulus" "TAIR-GO" "15" "0" "2" "0" "alanine degradation III" "AraCyc" "15" "3.20806286787722e-10" "2" "0.00393051070596702" "biosynthesis of secondary products derived from primary amino acids" "FunCat" "15" "0.00126040031062008" "3" "0.100549746918770" "Glycosphingolipid metabolism" "KEGG" "15" "0.000279974152358754" "3" "0.0302163277095451" "lipid biosynthesis" "TAIR-GO" "14" "0.0233750630458383" "2" "0.0385686681192207" "photosystem II" "TAIR-GO" "14" "0.000674694141885498" "2" "0.0385686681192207" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "14" "0.0352260260805388" "3" "0.136281188462559" "plastoquinone biosynthesis" "AraCyc" "14" "1.27581445436994e-05" "2" "0.0138661325055619" "biosynthesis of nonprotein amino acids" "FunCat" "14" "1.49166392243409e-07" "2" "0.0130276062713254" "polyprenyl diphosphate biosynthesis" "LitPath" "14" "0.00146000382441957" "2" "0.138797808113335" "glutamate degradation I" "AraCyc" "13" "0.027625532735433" "2" "0.118872525699677" "cytoplasmic and nuclear protein degradation" "FunCat" "13" "2.12432237921567e-05" "2" "0.0130276062713254" "transmembrane signal transduction" "FunCat" "13" "8.48977480315524e-08" "3" "0.00248453467336878" "Plastoquinone biosynthesis" "BioPath" "12" "0" "2" "0" "Tic apparatus" "BioPath" "12" "0.00278779053938827" "3" "0.0272649501184554" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "12" "3.69788099369367e-07" "2" "0.00368179194939956" "energy conversion and regeneration " "FunCat" "12" "1.1990869890811e-09" "2" "0.00368179194939956" "1,2-Dichloroethane degradation" "KEGG" "12" "1.33806439536669e-06" "2" "0.0160199284017923" "Vitamin B6 metabolism" "KEGG" "12" "0.0151901442571106" "3" "0.0173607430681589" "response to oxidative stress" "TAIR-GO" "11" "0.00117052284525234" "2" "0.0385686681192207" "brassinosteroid biosynthesis" "BioPath" "10" "0.0139132833931939" "1" "0.069627133772735" "ERD1 protease (ClpC-like)" "BioPath" "10" "0" "1" "0" "Oxygen-evolving enhancer protein" "BioPath" "10" "0.0359822174161506" "1" "0.186000219904240" "Regulatory enzymes" "BioPath" "10" "0.0139132833931939" "1" "0.069627133772735" "Transcriptional regulators (chloroplast)" "BioPath" "10" "0.000257121162489141" "1" "0.0259949146939628" "biotin binding" "TAIR-GO" "10" "0.000185491752453772" "1" "0.0295751733263125" "carotenoid biosynthesis/TAS" "TAIR-GO" "10" "0" "1" "0" "cell communication" "TAIR-GO" "10" "0" "1" "0" "cellular response to sulfate starvation" "TAIR-GO" "10" "9.9390215048934e-05" "1" "0.0295751733263125" "chlorophyll catabolism" "TAIR-GO" "10" "0.0107247167296889" "1" "0.0785906314142859" "chloroplast ATP synthase complex" "TAIR-GO" "10" "0.000185491752453772" "1" "0.0295751733263125" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "0.0107247167296889" "1" "0.0785906314142859" "cysteine biosynthesis" "TAIR-GO" "10" "0.0107247167296889" "1" "0.0785906314142859" "etioplast organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "glycine catabolism" "TAIR-GO" "10" "0" "1" "0" "glyoxysome organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "magnesium chelatase complex" "TAIR-GO" "10" "9.7138407517121e-06" "1" "0.0295751733263125" "methionine biosynthesis from L-homoserine via cystathione" "TAIR-GO" "10" "0" "1" "0" "methylation-dependent chromatin silencing" "TAIR-GO" "10" "0" "1" "0" "pectin biosynthesis" "TAIR-GO" "10" "2.30942380778743e-05" "1" "0.0785906314142859" "photoinhibition" "TAIR-GO" "10" "0.00428159343320627" "1" "0.0785906314142859" "phytochromobilin biosynthesis" "TAIR-GO" "10" "0.0107247167296889" "1" "0.0785906314142859" "plastid organization and biogenesis" "TAIR-GO" "10" "0.00301412023070652" "1" "0.139509843609338" "plastoquinone biosynthesis" "TAIR-GO" "10" "0.000185491752453772" "1" "0.0295751733263125" "positive regulation of transcription" "TAIR-GO" "10" "0.00805981994019913" "1" "0.0785906314142859" "posttranscriptional gene silencing" "TAIR-GO" "10" "0" "1" "0" "protein binding" "TAIR-GO" "10" "0.0227967336189209" "1" "0.206803960602750" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "response to cadmium ion" "TAIR-GO" "10" "0" "1" "0" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to salicylic acid stimulus" "TAIR-GO" "10" "0" "1" "0" "response to toxin" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "xenobiotic catabolism" "TAIR-GO" "10" "0" "1" "0" "glycine degradation I" "AraCyc" "10" "0.0347417014940178" "3" "0.0401533370870583" "glycosylglyceride desaturation pathway" "AraCyc" "10" "0.0420089810188108" "1" "0.120046179781995" "peptidoglycan biosynthesis" "AraCyc" "10" "0.0284060196378224" "1" "0.368233389468586" "proline biosynthesis I" "AraCyc" "10" "0.00846584579342506" "3" "0.0254271975432022" "degradation of lipids, fatty acids and isoprenoids" "FunCat" "10" "0" "1" "0" "detoxification by modification" "FunCat" "10" "3.43419730011717e-05" "1" "0.0642932919163897" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "phospholipid biosynthesis " "FunCat" "10" "0.0136623136857759" "1" "0.115558977561454" "regulation of nucleotide metabolism" "FunCat" "10" "0" "2" "0" "chlorophyll a biosynthesis" "LitPath" "10" "0" "1" "0" "chlorophyll catabolism" "LitPath" "10" "0.011633944622956" "1" "0.0759262168721542" "diterpene biosynthesis" "LitPath" "10" "0.000203910175122586" "1" "0.0284775893753177" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "acetate metabolism" "TAIR-GO" "9" "0" "1" "0" "DNA methylation" "TAIR-GO" "9" "0" "1" "0" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "glyoxylate cycle" "TAIR-GO" "9" "0" "1" "0" "induced systemic resistance, jasmonic acid mediated signaling pathway" "TAIR-GO" "9" "0" "1" "0" "jasmonic acid and ethylene-dependent systemic resistance" "TAIR-GO" "9" "0.000329948960010660" "1" "0.0295751733263125" "jasmonic acid mediated signaling pathway" "TAIR-GO" "9" "0" "1" "0" "methylglyoxal catabolism" "TAIR-GO" "9" "0.000329948960010660" "1" "0.0295751733263125" "negative regulation of signal transduction" "TAIR-GO" "9" "0" "1" "0" "negative regulation of transcription" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "0.00742118494925813" "1" "0.0785906314142859" "nuclear heterochromatin" "TAIR-GO" "9" "0" "1" "0" "nuclear ubiquitin ligase complex" "TAIR-GO" "9" "0" "1" "0" "phosphoinositide-mediated signaling" "TAIR-GO" "9" "0" "1" "0" "phosphorylation" "TAIR-GO" "9" "0" "1" "0" "photomorphogenesis" "TAIR-GO" "9" "0.000329948960010660" "1" "0.0785906314142859" "pollen germination" "TAIR-GO" "9" "0.0136426633190273" "1" "0.0785906314142859" "pollen tube growth" "TAIR-GO" "9" "0.00365280774572983" "1" "0.139509843609338" "polyamine biosynthesis" "TAIR-GO" "9" "0.00742118494925813" "1" "0.0785906314142859" "protein amino acid adenylylation" "TAIR-GO" "9" "0" "1" "0" "putrescine biosynthesis" "TAIR-GO" "9" "8.53699658760769e-05" "1" "0.0295751733263125" "red, far-red light phototransduction" "TAIR-GO" "9" "0" "1" "0" "RNA interference, production of siRNA" "TAIR-GO" "9" "0" "1" "0" "seed germination" "TAIR-GO" "9" "3.03620761870119e-08" "1" "0" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "sphingosine biosynthesis" "TAIR-GO" "9" "0" "1" "0" "sulfur metabolism" "TAIR-GO" "9" "0" "1" "0" "trehalose biosynthesis" "TAIR-GO" "9" "0.000329948960010660" "1" "0.0295751733263125" "mannosyl-chito-dolichol biosynthesis" "AraCyc" "9" "6.4592090206873e-05" "2" "0.00393051070596702" "oxidation of fatty acids " "FunCat" "9" "1.92221495529046e-07" "1" "0.0238856252717296" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "chloroplast stroma protein import" "TAIR-GO" "8" "2.24789439391192e-05" "2" "0.00506744428232586" "fatty acid desaturation" "TAIR-GO" "8" "0.0229790062455007" "1" "0.0785906314142859" "nitrate assimilation" "TAIR-GO" "8" "0.0229790062455007" "1" "0.0785906314142859" "nonphotochemical quenching" "TAIR-GO" "8" "0.00177764099411541" "1" "0.0295751733263125" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "photosystem II antenna complex" "TAIR-GO" "8" "0.00437447919905605" "1" "0.0785906314142859" "transcription factor binding" "TAIR-GO" "8" "0" "1" "0" "accessory proteins of photosynthetic electron transport " "FunCat" "8" "1.62441013610260e-05" "1" "0.0238856252717296" "cell wall organization and biogenesis (sensu Magnoliophyta)" "TAIR-GO" "7" "0.0114609404061031" "1" "0.0785906314142859" "DNA-directed RNA polymerase II, holoenzyme" "TAIR-GO" "7" "0" "1" "0" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "protein amino acid glycosylation" "TAIR-GO" "7" "0" "1" "0" "protein amino acid N-linked glycosylation via asparagine" "TAIR-GO" "7" "0" "1" "0" "response to water deprivation" "TAIR-GO" "7" "0" "2" "0" "systemic acquired resistance, salicylic acid mediated signaling pathway" "TAIR-GO" "7" "0.00514299790106643" "1" "0.0785906314142859" "phosphoglycerate dehydrogenase, cysteine biosynthesis II" "AraCyc" "7" "7.59201857551234e-05" "1" "0.0249390591852375" "phosphoglycerate dehydrogenase, serine biosynthesis" "AraCyc" "7" "7.59201857551234e-05" "1" "0.0249390591852375" "cation transport (Na, K, Ca , NH4, etc.) " "FunCat" "7" "0.0312617620903452" "1" "0.0642932919163897" "heavy metal ion transport (Cu, Fe, etc.)" "FunCat" "7" "0.00402099723505923" "1" "0.0238856252717296" "ion transport " "FunCat" "7" "0" "1" "0" "rRNA synthesis " "FunCat" "7" "0.000405899702128156" "1" "0.0238856252717296"