"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Glucosinolate Metabolism" "LitPath" "360" "36" "" "" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "310" "47" "" "" "glucosinolate biosynthesis" "TAIR-GO" "200" "20" "" "" "Branched-chain amino acids from aspartate" "BioPath" "188" "30" "" "" "leucine biosynthesis" "AraCyc" "174" "27" "" "" "glucosinolate biosynthesis from homomethionine" "AraCyc" "150" "15" "" "" "leucine biosynthesis" "TAIR-GO" "144" "22" "" "" "Valine, leucine and isoleucine biosynthesis" "KEGG" "140" "20" "" "" "amino acid metabolism" "FunCat" "101" "13" "" "" "Flavonoid and anthocyanin metabolism" "BioPath" "90" "9" "" "" "sulfate assimilation III" "AraCyc" "81" "9" "" "" "Selenoamino acid metabolism" "KEGG" "80" "8" "" "" "Sulfur metabolism" "KEGG" "80" "8" "" "" "Pyruvate metabolism" "KEGG" "80" "8" "" "" "TCA cycle -- aerobic respiration" "AraCyc" "64" "12" "" "" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "60" "6" "" "" "TCA cycle variation IV" "AraCyc" "60" "10" "" "" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "56" "7" "" "" "Ascorbate and aldarate metabolism" "KEGG" "44" "5" "" "" "response to UV" "TAIR-GO" "40" "4" "" "" "homomethionine biosynthesis" "AraCyc" "40" "4" "" "" "Fluorene degradation" "KEGG" "40" "4" "" "" "gamma-Hexachlorocyclohexane degradation" "KEGG" "40" "4" "" "" "ORGAN DATA SET" "quantDE" "5.108885" "maxDE" "6.5902935" "ORGAN DATA SET" "Glucosinolate Metabolism" "LitPath" "130" "1.14703120782226e-180" "13" "7.79458227577174e-22" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "126" "1.16183337052466e-52" "17" "4.43497671142915e-09" "Glutathione metabolism" "BioPath" "60" "1.68945084589092e-28" "8" "1.24056387466225e-05" "glucosinolate biosynthesis" "TAIR-GO" "60" "1.75353431467078e-76" "6" "8.23071258913999e-11" "Selenoamino acid metabolism" "KEGG" "50" "2.76660686899713e-34" "5" "1.85640723778534e-05" "Sulfur metabolism" "KEGG" "50" "1.77275068347984e-38" "5" "2.64115218898967e-06" "Branched-chain amino acids from aspartate" "BioPath" "46" "6.44234496539117e-37" "7" "2.58744698323199e-08" "sulfate assimilation III" "AraCyc" "46" "2.42009442888143e-23" "5" "0.000241955330110873" "amino acid metabolism" "FunCat" "44" "9.24803625122223e-21" "5" "0.000714110219617898" "Phenylpropanoid Metabolism" "BioPath" "40" "0.00216731228846575" "4" "0.322383596193267" "glucosinolate biosynthesis from homomethionine" "AraCyc" "40" "4.70231569632826e-52" "4" "1.51894200557490e-08" "leucine biosynthesis" "AraCyc" "40" "1.17843274666939e-43" "6" "9.88207927220027e-08" "Valine, leucine and isoleucine biosynthesis" "KEGG" "36" "7.50277686073199e-23" "5" "2.26651153726283e-05" "Flavonoid and anthocyanin metabolism" "BioPath" "30" "1.36940120259959e-15" "3" "0.03069295516402" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "30" "3.92579686262175e-38" "3" "5.66267257966196e-07" "Purine metabolism" "KEGG" "30" "6.49545711799851e-10" "3" "0.0286941464981349" "dissimilatory sulfate reduction" "AraCyc" "26" "1.49351053372373e-23" "3" "1.85714912520160e-05" "Cysteine metabolism" "KEGG" "26" "1.91431571493755e-13" "3" "0.00167456029420067" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "22" "9.47629540017424e-05" "3" "0.126637659699031" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "indoleacetic acid biosynthesis" "TAIR-GO" "20" "4.74398062349061e-21" "2" "0.000211377981005940" "positive regulation of transcription" "TAIR-GO" "20" "5.50999189753797e-26" "2" "2.20215345965208e-05" "regulation of transcription" "TAIR-GO" "20" "0" "2" "0" "sulfate assimilation" "TAIR-GO" "20" "7.7969923663309e-16" "2" "0.00111335204852117" "glucosinolate biosynthesis from tryptophan" "AraCyc" "20" "1.3474334872947e-24" "2" "2.09204292526400e-05" "nitrogen and sulfur metabolism" "FunCat" "20" "6.1393791437377e-16" "2" "0.00119244216728078" "nitrogen and sulfur utilization " "FunCat" "20" "4.64755409545576e-22" "2" "0.000184598904660275" "Pyruvate metabolism" "KEGG" "20" "0.00469626545760601" "2" "0.165012746790250" "Lipid signaling" "AcylLipid" "20" "0.000265606547781609" "4" "0.0472043206624062" "Phenylalanine metabolism" "KEGG" "18" "0.000504296922106143" "3" "0.0888012509375278" "jasmonic acid biosynthesis" "TAIR-GO" "16" "1.18699022845856e-06" "2" "0.0154132544150949" "histidine biosynthesis" "AraCyc" "16" "3.04784341264627e-09" "2" "0.00899112651230456" "histidine biosynthesis I" "AraCyc" "16" "4.71907481984103e-10" "2" "0.00745439692919538" "jasmonic acid biosynthesis" "AraCyc" "16" "9.11909759895405e-07" "2" "0.0125834760398949" "lipoxygenase pathway" "AraCyc" "16" "1.37572247432902e-09" "2" "0.00383016068277008" "Alkaloid biosynthesis I" "KEGG" "16" "3.03194820304452e-07" "2" "0.00843260343170077" "Glutamate metabolism" "KEGG" "16" "0.00229645989639614" "2" "0.0505306322026238" "Novobiocin biosynthesis" "KEGG" "16" "3.29509887390184e-11" "2" "0.00177666770341905" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "16" "0.00156932392420206" "2" "0.0505306322026238" "Tyrosine metabolism" "KEGG" "16" "0.000139806996812521" "2" "0.0421550421099178" "secondary metabolism" "FunCat" "15" "1.3069904869561e-07" "3" "0.0037422478173441" "Glycan Biosynthesis and Metabolism" "KEGG" "14" "0.0213788202532579" "2" "0.123930761934136" "Miscellaneous acyl lipid metabolism" "AcylLipid" "14" "0.0280373350599416" "3" "0.201466310427252" "TCA cycle -- aerobic respiration" "AraCyc" "12" "0.0429224112689052" "2" "0.141106102264952" "TCA cycle variation IV" "AraCyc" "12" "0.0368320938926849" "2" "0.128351173282959" "Ion channels" "KEGG" "12" "0.000139366744619614" "3" "0.0146332559754726" "Ligand-Receptor Interaction" "KEGG" "12" "0.000184895106585343" "3" "0.0167627728160371" "Glutamate/glutamine from nitrogen fixation" "BioPath" "10" "0.000152174726690970" "1" "0.0314162778918116" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "10" "0.01162858806903" "2" "0.0265263342320622" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "10" "0.0129656926173076" "1" "0.138660204338891" "aging" "TAIR-GO" "10" "2.15817078907475e-06" "1" "0.0200469780810606" "amino acid biosynthesis" "TAIR-GO" "10" "7.45464882734128e-09" "2" "0.00111335204852117" "aspartate family amino acid biosynthesis" "TAIR-GO" "10" "8.42886897849711e-15" "2" "2.20215345965208e-05" "cysteine biosynthesis" "TAIR-GO" "10" "8.03371283275757e-10" "1" "0.00235508078323903" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "fatty acid biosynthesis" "TAIR-GO" "10" "0.00177346754569571" "1" "0.0661882707163873" "indole glucosinolate biosynthesis" "TAIR-GO" "10" "0" "1" "0" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "lignin biosynthesis" "TAIR-GO" "10" "7.4149927504803e-05" "1" "0.0253071641370135" "methionine biosynthesis" "TAIR-GO" "10" "7.45464882734128e-09" "1" "0.00462386186890874" "response to jasmonic acid stimulus" "TAIR-GO" "10" "8.67670357714215e-07" "1" "0.0153135715729257" "response to red light" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "0.000481389508644038" "1" "0.0509802621142702" "response to wounding" "TAIR-GO" "10" "0.0228371276014854" "1" "0.128452425709892" "shade avoidance" "TAIR-GO" "10" "0" "1" "0" "sulfate reduction" "TAIR-GO" "10" "3.28007969205405e-12" "1" "0.000799707950810691" "sulfate reduction, APS pathway" "TAIR-GO" "10" "0" "1" "0" "tryptophan biosynthesis" "TAIR-GO" "10" "0.00290654776054113" "1" "0.0826957733278632" "tryptophan catabolism" "TAIR-GO" "10" "3.28007969205405e-12" "1" "0.000799707950810691" "alanine biosynthesis II" "AraCyc" "10" "0.00173304848781528" "1" "0.152155077930222" "ammonia assimilation cycle" "AraCyc" "10" "2.42927731017785e-05" "1" "0.0242677415116977" "fatty acid oxidation pathway" "AraCyc" "10" "0.0071918978077399" "1" "0.0963710814434535" "glutamine biosynthesis I" "AraCyc" "10" "7.31503831406866e-06" "1" "0.0146796569597450" "homocysteine and cysteine interconversion" "AraCyc" "10" "4.42164957317023e-06" "1" "0.0297907167434929" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "homoserine biosynthesis" "AraCyc" "10" "1.94444744503513e-08" "2" "0.000674642727012645" "IAA biosynthesis" "AraCyc" "10" "0.00033605767627126" "1" "0.0421452703518127" "IAA biosynthesis I" "AraCyc" "10" "1.36520496799674e-05" "1" "0.0242677415116977" "lysine biosynthesis I" "AraCyc" "10" "9.68128321822436e-05" "2" "0.0106996955721269" "methionine biosynthesis II" "AraCyc" "10" "8.62939773784874e-05" "1" "0.0489209139607065" "nitrate assimilation pathway" "AraCyc" "10" "0.000167376942374521" "1" "0.0297907167434929" "octane oxidation" "AraCyc" "10" "0.000484739533369122" "1" "0.0297907167434929" "phenylalanine biosynthesis II" "AraCyc" "10" "0.000369042682678505" "1" "0.123476950278597" "phenylalanine degradation I" "AraCyc" "10" "0.00758560024007139" "1" "0.171933612786223" "serine biosynthesis" "AraCyc" "10" "1.94444744503513e-08" "2" "0.000674642727012645" "tyrosine degradation" "AraCyc" "10" "5.02799746438771e-07" "1" "0.0297907167434929" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "10" "3.77429263436611e-06" "1" "0.0213185138289729" "biogenesis of chloroplast" "FunCat" "10" "0.0102072885728645" "1" "0.142112461600779" "nucleotide metabolism" "FunCat" "10" "0" "1" "0" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.00655604724313574" "1" "0.0845533408201044" "Fluorene degradation" "KEGG" "10" "0.000119661744465623" "1" "0.0335112259193278" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "0.000432673785314952" "1" "0.0423325822083344" "Methionine metabolism" "KEGG" "10" "0.00091720033072227" "1" "0.056971024889416" "Peptidoglycan biosynthesis" "KEGG" "10" "1.28158759483627e-08" "1" "0.00362090097656062" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "10" "0.00769382581889778" "2" "0.0480705422196872" "oxylipin pathway" "LitPath" "10" "7.0298598880308e-12" "1" "0.000664694305785447" "photosynthesis" "FunCat" "9" "0.0020283494422052" "2" "0.0115879279250643" "photosystem I" "TAIR-GO" "7" "0.000109169114934392" "1" "0.0153135715729257" "photosystem II" "TAIR-GO" "7" "1.21677405166915e-05" "1" "0.00756551779417727" "photosystem II assembly" "TAIR-GO" "7" "1.23717176563903e-07" "1" "0.00235508078323903" "photosystem II stabilization" "TAIR-GO" "7" "1.65081415293609e-08" "1" "0.000799707950810691" "STRESS DATA SET" "quantDE" "3.353244" "maxDE" "6.93358" "STRESS DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "82" "7.79334843365517e-31" "13" "8.12221638958447e-07" "Glucosinolate Metabolism" "LitPath" "80" "3.19365054686919e-108" "8" "1.13698015765188e-14" "Branched-chain amino acids from aspartate" "BioPath" "64" "1.89392114281116e-71" "10" "9.62751411745269e-14" "glucosinolate biosynthesis" "TAIR-GO" "50" "3.12312724066816e-80" "5" "3.53094839878704e-11" "leucine biosynthesis" "AraCyc" "42" "4.66168422000091e-49" "7" "1.4968187203713e-09" "Valine, leucine and isoleucine biosynthesis" "KEGG" "42" "4.16692229306964e-34" "6" "2.52814172297281e-07" "glucosinolate biosynthesis from homomethionine" "AraCyc" "40" "6.033239998291e-54" "4" "9.87129914614348e-09" "Pyruvate metabolism" "KEGG" "30" "8.2706980418992e-10" "3" "0.0227806904883398" "TCA cycle -- aerobic respiration" "AraCyc" "26" "1.34350453036514e-09" "5" "0.00110111260381641" "TCA cycle variation VII" "AraCyc" "26" "1.15334587101612e-05" "5" "0.00838182777529145" "TCA cycle variation VIII" "AraCyc" "26" "8.91390218644165e-09" "5" "0.00137606707250173" "TCA cycle variation IV" "AraCyc" "24" "1.6634198028658e-08" "4" "0.00535244270060489" "Carbon fixation" "KEGG" "22" "2.32614799292877e-06" "3" "0.0162084487452959" "Flavonoid and anthocyanin metabolism" "BioPath" "20" "2.51166389553634e-10" "2" "0.0796186795386285" "amino acid metabolism" "FunCat" "20" "2.76028839382899e-07" "3" "0.00961222741724833" "Glycine, serine and threonine metabolism" "KEGG" "20" "1.52797577219276e-09" "3" "0.00195247064260915" "C-compound and carbohydrate metabolism" "FunCat" "18" "0.0113058203555321" "3" "0.171547660149496" "Alanine and aspartate metabolism" "KEGG" "17" "4.40412574422393e-08" "3" "0.00110347355979719" "aspartate degradation I" "AraCyc" "16" "1.15219801577042e-05" "2" "0.0274791860913391" "aspartate degradation II" "AraCyc" "16" "8.96762968080169e-09" "2" "0.0071151489919667" "sulfate assimilation III" "AraCyc" "16" "0.000882014138693603" "2" "0.0507595681390817" "secondary metabolism" "FunCat" "16" "5.77547218002059e-11" "2" "0.0128818330852131" "Cysteine metabolism" "KEGG" "16" "1.33681871493874e-07" "2" "0.00746999912562516" "glutamate degradation I" "AraCyc" "15" "5.1184125944368e-13" "2" "0.00082572707807681" "Glutamate metabolism" "KEGG" "15" "0.000365902765316416" "2" "0.0265737277229103" "acetyl-CoA assimilation" "AraCyc" "14" "0.000362275789433316" "3" "0.0083300283686399" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "14" "0.00695789602591643" "2" "0.188583444631768" "glyoxylate cycle" "AraCyc" "12" "0.000469729236837721" "2" "0.0197759198191186" "mixed acid fermentation" "AraCyc" "12" "0.00178774283888060" "2" "0.058724660968511" "phenylalanine degradation I" "AraCyc" "12" "0.000331868797462403" "2" "0.0303538426882762" "serine-isocitrate lyase pathway" "AraCyc" "12" "0.0287499786285847" "2" "0.106381159535233" "TCA cycle variation II" "AraCyc" "12" "1.72536764248297e-06" "2" "0.00848135226122836" "biogenesis of chloroplast" "FunCat" "12" "3.02603610232259e-05" "2" "0.0134736515815051" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "12" "0.000548603955757903" "2" "0.0500826389897352" "Valine, leucine and isoleucine degradation" "KEGG" "12" "0.000185877790792675" "3" "0.00175521073102466" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "10" "0.00103755532730416" "2" "0.0169566504674327" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "10" "0.00117896473555112" "1" "0.104901244297824" "sterol biosynthesis" "BioPath" "10" "0.00214470942685931" "1" "0.0820652479669416" "amino acid biosynthesis" "TAIR-GO" "10" "3.05444515896847e-13" "2" "7.58197319349912e-05" "aspartate family amino acid biosynthesis" "TAIR-GO" "10" "2.33410280361715e-19" "2" "1.40693137699994e-06" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "methionine biosynthesis" "TAIR-GO" "10" "3.05444515896847e-13" "1" "0.000777071169825264" "response to UV" "TAIR-GO" "10" "6.75523160127274e-08" "1" "0.00947301004978125" "sterol biosynthesis" "TAIR-GO" "10" "4.5316886595905e-06" "1" "0.0219547876515870" "formaldehyde assimilation I (serine pathway)" "AraCyc" "10" "0.0092688938544031" "1" "0.205685107602962" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "2.29721658052308e-08" "1" "0.00374943274307169" "homocysteine and cysteine interconversion" "AraCyc" "10" "1.63262373173546e-06" "1" "0.0254402460255667" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "homoserine biosynthesis" "AraCyc" "10" "6.6801754240575e-09" "2" "0.000525822406899022" "lysine biosynthesis I" "AraCyc" "10" "3.82665117897937e-05" "2" "0.00848135226122836" "methionine biosynthesis II" "AraCyc" "10" "3.40040177251471e-05" "1" "0.0419612859209055" "serine biosynthesis" "AraCyc" "10" "6.6801754240575e-09" "2" "0.000525822406899022" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.000852950275279273" "1" "0.0542084439706283" "Citrate cycle (TCA cycle)" "KEGG" "10" "0.00801053024544425" "1" "0.127305383302491" "Fluorene degradation" "KEGG" "10" "1.07718207603041e-05" "1" "0.0208908049286625" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "4.27552522154137e-05" "1" "0.0265401398941660" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "0.00062847290657387" "1" "0.0663718539853488" "Methionine metabolism" "KEGG" "10" "9.65938494626387e-05" "1" "0.0360205673898127" "Pantothenate and CoA biosynthesis" "KEGG" "10" "9.79373481886888e-06" "2" "0.00313862110943949" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "3.64765533312269e-05" "1" "0.0360205673898127" "Selenoamino acid metabolism" "KEGG" "10" "0.00431708901980072" "1" "0.0749381771618495" "Sulfur metabolism" "KEGG" "10" "0.00108741002694918" "1" "0.0429590040012454" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "10" "0" "2" "0" "calmodulin binding" "TAIR-GO" "9" "2.40266951868003e-08" "1" "0.00947301004978125" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "1.60322202732455e-13" "1" "0.000391327913002698" "beta-Alanine metabolism" "KEGG" "9" "0.000195510921574157" "1" "0.0360205673898127" "Butanoate metabolism" "KEGG" "9" "0.000963553987916288" "1" "0.0542084439706283" "Taurine and hypotaurine metabolism" "KEGG" "9" "7.00945853594208e-10" "1" "0.00219305485639846" "oxidative branch of the pentose phosphate pathway" "AraCyc" "8" "3.7240165362241e-05" "2" "0.00384182520556735" "C-compound and carbohydrate utilization " "FunCat" "8" "4.08045386945568e-16" "2" "0" "HORMONE DATA SET" "quantDE" "3.151821" "maxDE" "6.3114794" "HORMONE DATA SET" "Glucosinolate Metabolism" "LitPath" "70" "0" "7" "0" "glucosinolate biosynthesis" "TAIR-GO" "50" "6.6804711856179e-68" "5" "4.65867877751112e-10" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "48" "3.90839840050058e-17" "8" "2.92336890276557e-05" "glucosinolate biosynthesis from homomethionine" "AraCyc" "40" "4.06774987393913e-63" "4" "4.12284811781747e-10" "Branched-chain amino acids from aspartate" "BioPath" "36" "1.09680934530507e-37" "6" "2.76373952447057e-09" "leucine biosynthesis" "AraCyc" "30" "3.28283290722444e-36" "5" "3.72344432747767e-08" "Valine, leucine and isoleucine biosynthesis" "KEGG" "26" "1.19693972516347e-24" "4" "3.35870088532871e-06" "Flavonoid and anthocyanin metabolism" "BioPath" "20" "4.28036770378997e-14" "2" "0.0191661291684897" "Phenylpropanoid Metabolism" "BioPath" "20" "0.00812638926864626" "2" "0.271501331532318" "development" "TAIR-GO" "19" "2.21355264305257e-07" "2" "0.0229564204671414" "response to jasmonic acid stimulus" "TAIR-GO" "16" "2.8436714524575e-16" "2" "0.000158634023354086" "response to wounding" "TAIR-GO" "16" "8.95927141454378e-08" "2" "0.00584073332558711" "Ascorbate and aldarate metabolism" "KEGG" "14" "1.53472982037278e-10" "2" "0.000934241167261652" "isoleucine degradation I" "AraCyc" "13" "2.96307889187863e-07" "2" "0.00407860915121871" "isoleucine degradation III" "AraCyc" "13" "2.7318066380732e-11" "2" "0.000498381680056594" "leucine degradation I" "AraCyc" "13" "2.96307889187863e-07" "2" "0.00407860915121871" "leucine degradation II" "AraCyc" "13" "2.7318066380732e-11" "2" "0.000498381680056594" "valine degradation I" "AraCyc" "13" "2.04313352837651e-07" "2" "0.0109436700646412" "valine degradation II" "AraCyc" "13" "1.77555289915626e-11" "2" "0.00146699767534063" "amino acid metabolism" "FunCat" "13" "4.37045061677055e-08" "2" "0.00174086950506522" "Glutathione metabolism" "BioPath" "12" "0.00178163918239159" "2" "0.0346963943716598" "TCA cycle -- aerobic respiration" "AraCyc" "12" "0.000317800353615196" "2" "0.0261609569466054" "TCA cycle variation IV" "AraCyc" "12" "0.000254902364550615" "2" "0.0233382527069873" "TCA cycle variation VII" "AraCyc" "12" "0.0149613403572514" "2" "0.0709116528975397" "TCA cycle variation VIII" "AraCyc" "12" "0.000718586105912782" "2" "0.0291595428713889" "Thylakoid biogenesis and photosystem assembly" "BioPath" "10" "5.46214800111055e-10" "1" "0.00218536190293296" "Transcriptional regulators (chloroplast)" "BioPath" "10" "9.93984865199057e-17" "1" "0.000107532204188294" "amino acid biosynthesis" "TAIR-GO" "10" "6.58157411180166e-11" "2" "0.000250808430133538" "aspartate family amino acid biosynthesis" "TAIR-GO" "10" "5.89782984305472e-17" "2" "4.7538550875029e-06" "cell plate formation (sensu Magnoliophyta)" "TAIR-GO" "10" "2.4457424032899e-14" "1" "0.000291322182081037" "cytokinesis by cell plate formation" "TAIR-GO" "10" "5.89782984305472e-17" "1" "0.000291322182081037" "embryonic development" "TAIR-GO" "10" "0.000125554193809345" "1" "0.041426100234745" "embryonic development (sensu Magnoliophyta)" "TAIR-GO" "10" "3.69292425793508e-06" "1" "0.0232663336449349" "positive regulation of transcription" "TAIR-GO" "10" "4.29240742276316e-12" "1" "0.000864458836068106" "regulation of transcription" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "8.80233844086711e-06" "1" "0.0201594207442001" "trichome branching (sensu Magnoliophyta)" "TAIR-GO" "10" "0" "1" "0" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "1.30123127679467e-10" "1" "0.00109824031491845" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "homoserine biosynthesis" "AraCyc" "10" "3.61778090401876e-11" "2" "8.32678110181133e-05" "lysine biosynthesis I" "AraCyc" "10" "3.42178058950082e-07" "2" "0.00146699767534063" "serine biosynthesis" "AraCyc" "10" "3.61778090401876e-11" "2" "8.32678110181133e-05" "secondary metabolism" "FunCat" "10" "8.63334021668078e-10" "1" "0.00947669804389428" "Fluorene degradation" "KEGG" "10" "7.13187369200042e-09" "1" "0.00604179842698011" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "3.32669039373756e-08" "1" "0.00774845287533295" "Purine metabolism" "KEGG" "10" "0.000333156323444126" "1" "0.0816868556949626" "Pyruvate metabolism" "KEGG" "10" "0.00300544707222067" "1" "0.111314556538839" "Selenoamino acid metabolism" "KEGG" "10" "7.9086723146395e-06" "1" "0.0232437045645297" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "10" "0.000813480503350526" "1" "0.185667800474225" "Sulfur metabolism" "KEGG" "10" "1.43773368612573e-06" "1" "0.0128396439910463" "fatty acid beta oxidation complex" "BioPath" "9" "2.05617592869485e-06" "1" "0.0217997218818569" "Gluconeogenesis from lipids in seeds" "BioPath" "9" "0.0200022075095299" "1" "0.160167433336900" "flower development" "TAIR-GO" "9" "7.386728995229e-09" "1" "0.00281926794119656" "hyperosmotic salinity response" "TAIR-GO" "9" "5.98783758313923e-07" "1" "0.0120147988312697" "response to abscisic acid stimulus" "TAIR-GO" "9" "4.2284826130826e-06" "1" "0.0172436526413208" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "seed germination" "TAIR-GO" "9" "8.84473983179036e-18" "1" "0" "fatty acid oxidation pathway" "AraCyc" "9" "0.000259854410496306" "1" "0.0274224330490363" "homocysteine and cysteine interconversion" "AraCyc" "9" "1.38374288730768e-07" "1" "0.00781059969066503" "methionine biosynthesis II" "AraCyc" "9" "2.55331542999510e-06" "1" "0.0131849630516304" "sulfate assimilation III" "AraCyc" "9" "0.0125677321742691" "1" "0.0749728194277934" "oxidation of fatty acids " "FunCat" "9" "1.23220805906322e-24" "1" "5.76942493256985e-06" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "9" "2.50190508907177e-06" "1" "0.0307911857245902" "Lipid signaling" "AcylLipid" "9" "0.0169916417930436" "2" "0.0499101663881048" "abscisic acid biosynthesis" "TAIR-GO" "7" "8.34976192773043e-05" "1" "0.0120147988312697" "jasmonic acid biosynthesis" "TAIR-GO" "7" "0.00606580348268045" "1" "0.041426100234745" "response to pest, pathogen or parasite" "TAIR-GO" "7" "2.07214364875009e-13" "1" "0.000291322182081037" "response to water deprivation" "TAIR-GO" "7" "0" "1" "0" "jasmonic acid biosynthesis" "AraCyc" "7" "0.00220538408346700" "1" "0.0247516592478733" "lipoxygenase pathway" "AraCyc" "7" "0.000131272632808272" "1" "0.0112552133419651" "lipid, fatty acid and isoprenoid metabolism" "FunCat" "7" "2.10008610596803e-06" "1" "0.00449928243096219" "stress response" "FunCat" "7" "0" "1" "0" "MUTANT DATA SET" "quantDE" "2.722615" "maxDE" "5.426581" "MUTANT DATA SET" "Glucosinolate Metabolism" "LitPath" "80" "0" "8" "0" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "54" "1.04870517099264e-27" "9" "2.37708573226232e-07" "Branched-chain amino acids from aspartate" "BioPath" "42" "3.20043798039919e-52" "7" "5.31503677936896e-12" "leucine biosynthesis" "AraCyc" "42" "2.38278440567471e-61" "7" "4.02636284607149e-12" "glucosinolate biosynthesis" "TAIR-GO" "40" "2.63185202315426e-71" "4" "1.06240791117096e-10" "Valine, leucine and isoleucine biosynthesis" "KEGG" "36" "5.93227594526088e-35" "5" "1.19965837719371e-07" "glucosinolate biosynthesis from homomethionine" "AraCyc" "30" "2.45465398636922e-43" "3" "1.07871221169955e-07" "amino acid metabolism" "FunCat" "24" "1.50207189247566e-25" "3" "1.60662488307336e-05" "Flavonoid and anthocyanin metabolism" "BioPath" "20" "2.55131759923352e-16" "2" "0.00983416250735017" "Phenylpropanoid Metabolism" "BioPath" "20" "0.000364005731120258" "2" "0.167470686948839" "Pyruvate metabolism" "KEGG" "20" "7.46855637276171e-08" "2" "0.0204976442786016" "histidine biosynthesis" "AraCyc" "16" "2.84003667324675e-14" "2" "0.000922665967474586" "histidine biosynthesis I" "AraCyc" "16" "3.76842532936328e-15" "2" "0.000756315473087363" "Alkaloid biosynthesis I" "KEGG" "16" "2.88292413308382e-12" "2" "0.000698942607748609" "Cysteine metabolism" "KEGG" "16" "7.51719998420258e-11" "2" "0.00129097189340305" "Novobiocin biosynthesis" "KEGG" "16" "1.32506410906104e-16" "2" "0.000136505036635764" "Phenylalanine metabolism" "KEGG" "16" "2.49320672735570e-07" "2" "0.0335336393364838" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "16" "9.50044161658323e-08" "2" "0.0049820002293527" "Tyrosine metabolism" "KEGG" "16" "4.1250967533882e-09" "2" "0.00405568606080916" "TCA cycle -- aerobic respiration" "AraCyc" "14" "4.27331682007059e-06" "3" "0.00261157088705125" "TCA cycle variation VII" "AraCyc" "14" "0.000661190162477355" "3" "0.0108740361145520" "TCA cycle variation VIII" "AraCyc" "14" "1.20955735175014e-05" "3" "0.00304575777224735" "Glutathione metabolism" "BioPath" "12" "0.000167096669227751" "2" "0.0182180299838378" "TCA cycle variation IV" "AraCyc" "12" "6.5309065584922e-05" "2" "0.0181278367278466" "cysteine biosynthesis" "TAIR-GO" "10" "3.41237522416113e-17" "1" "8.54208336035678e-05" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "indoleacetic acid biosynthesis" "TAIR-GO" "10" "2.50420623619899e-15" "1" "0.000282996388864412" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "1.14596922456363e-10" "1" "0.00215391761291406" "alanine biosynthesis II" "AraCyc" "10" "2.59271405399432e-06" "1" "0.0383822556677142" "cysteine biosynthesis I" "AraCyc" "10" "0.000240810337379618" "1" "0.0849424249166798" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "2.98984297764474e-11" "1" "0.000907481811662795" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "phenylalanine biosynthesis II" "AraCyc" "10" "4.06002563124731e-07" "1" "0.0302637310787694" "phenylalanine degradation I" "AraCyc" "10" "1.66581427999859e-05" "1" "0.0442042700617564" "sulfate assimilation III" "AraCyc" "10" "0.00159061595558406" "1" "0.0634321061396108" "tyrosine degradation" "AraCyc" "10" "2.59972456476552e-10" "1" "0.00648634933156009" "nitrogen and sulfur metabolism" "FunCat" "10" "7.40841692516082e-14" "1" "0.000578248550270846" "Ascorbate and aldarate metabolism" "KEGG" "10" "1.05593508457221e-05" "1" "0.0174567133318244" "Fluorene degradation" "KEGG" "10" "8.22876719323083e-08" "1" "0.00643026833485082" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "3.68812498581109e-07" "1" "0.0082438581608715" "Selenoamino acid metabolism" "KEGG" "10" "7.08586639432716e-05" "1" "0.0246758077624766" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "10" "0.00519055374971459" "1" "0.194948931023384" "Sulfur metabolism" "KEGG" "10" "1.39738709949484e-05" "1" "0.0136490240832661"