"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"291"	"36"	""	""
"chlorophyll biosynthesis"	"TAIR-GO"	"264"	"31"	""	""
"chlorophyll biosynthesis"	"TAIR-GO"	"264"	"31"	""	""
"chlorophyll biosynthesis"	"TAIR-GO"	"264"	"31"	""	""
"photosynthesis"	"FunCat"	"247"	"36"	""	""
"photosynthesis"	"FunCat"	"247"	"36"	""	""
"Carbon fixation"	"KEGG"	"143"	"20"	""	""
"photorespiration"	"AraCyc"	"128"	"24"	""	""
"photorespiration"	"AraCyc"	"128"	"24"	""	""
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"120"	"14"	""	""
"Biosynthesis of steroids"	"KEGG"	"111"	"12"	""	""
"Glycolysis / Gluconeogenesis"	"KEGG"	"108"	"15"	""	""
"Calvin cycle"	"AraCyc"	"96"	"15"	""	""
"Pentose phosphate pathway"	"KEGG"	"90"	"12"	""	""
"carotenoid biosynthesis"	"AraCyc"	"64"	"7"	""	""
"carotenoid biosynthesis"	"AraCyc"	"64"	"7"	""	""
"Ascorbate and aldarate metabolism"	"KEGG"	"63"	"9"	""	""
"Carotenoid and abscisic acid metabolism"	"LitPath"	"62"	"7"	""	""
"Transcription (chloroplast)"	"BioPath"	"56"	"7"	""	""
"transcription initiation"	"TAIR-GO"	"56"	"7"	""	""
"Carotenoid biosynthesis"	"BioPath"	"56"	"6"	""	""
"carotenid biosynthesis"	"LitPath"	"56"	"6"	""	""
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"52"	"6"	""	""
"energy"	"FunCat"	"50"	"6"	""	""
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"47"	"5"	""	""
"carotene biosynthesis"	"TAIR-GO"	"40"	"4"	""	""
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"37"	"4"	""	""
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"36"	"6"	""	""
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"36"	"4"	""	""
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"30"	"3"	""	""
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"30"	"3"	""	""
"thiamine biosynthesis"	"AraCyc"	"30"	"3"	""	""
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"30"	"3"	""	""
"ORGAN DATA SET"	"quantDE"	"3.008664"	"maxDE"	"3.8667192"	"ORGAN DATA SET"
"Photosystems "	"BioPath"	"109"	"5.98205635401236e-28"	"19"	"3.17871495200078e-08"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"73"	"3.81349769745003e-11"	"10"	"0.00127671138245677"
"Photosynthesis"	"KEGG"	"51"	"4.06589054286842e-40"	"9"	"9.018771883035e-11"
"biogenesis of chloroplast"	"FunCat"	"44"	"1.66289561065943e-16"	"8"	"5.2223957842686e-06"
"Photosystem I"	"BioPath"	"41"	"3.79573081367446e-07"	"7"	"0.00415069730975403"
"photosynthesis"	"FunCat"	"41"	"1.78042429236163e-20"	"6"	"3.83509319091324e-05"
"additional photosystem II components"	"BioPath"	"40"	"5.10787935322617e-10"	"8"	"4.82811091207953e-05"
"Carbon fixation"	"KEGG"	"35"	"8.987091568213e-13"	"4"	"0.00514918499453997"
"Transcription (chloroplast)"	"BioPath"	"34"	"2.95277802377638e-30"	"4"	"3.86278053483071e-06"
"transcription initiation"	"TAIR-GO"	"34"	"1.22842476330257e-33"	"4"	"2.06549302202654e-06"
"Chlorophyll a/b binding proteins"	"BioPath"	"32"	"1.04537570548618e-12"	"4"	"0.00136186943340102"
"photosystem I"	"TAIR-GO"	"31"	"3.76207140305629e-35"	"4"	"7.95537773147013e-07"
"Pentose phosphate pathway"	"KEGG"	"30"	"2.84083624087924e-16"	"3"	"0.00530290781330066"
"Glutamate metabolism"	"KEGG"	"28"	"1.12221717083301e-10"	"3"	"0.00629561832296931"
"light harvesting complex"	"BioPath"	"26"	"4.95976573425029e-23"	"3"	"6.15502006265512e-05"
"chlorophyll biosynthesis"	"TAIR-GO"	"25"	"2.08083677829676e-12"	"3"	"0.000959310239057788"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"24"	"0.0223586524684834"	"3"	"0.144461152366374"
"photosystem II"	"TAIR-GO"	"23"	"1.24643044622682e-26"	"3"	"6.05354240565063e-06"
"Photosystem II"	"BioPath"	"21"	"0.0177231247749989"	"3"	"0.104015808352667"
"photosystem I reaction center"	"BioPath"	"20"	"2.94648914521875e-16"	"4"	"2.14899587484441e-05"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"2.86607519229506e-13"	"2"	"0.00670584438015869"
"Calvin cycle"	"AraCyc"	"20"	"2.32385424855670e-06"	"2"	"0.1535290476193"
"pentose-phosphate pathway "	"FunCat"	"20"	"7.15218255566429e-12"	"2"	"0.0103876999133471"
"Biosynthesis of steroids"	"KEGG"	"20"	"0.000204827206541975"	"2"	"0.0453709272288846"
"Fructose and mannose metabolism"	"KEGG"	"20"	"2.27096973522240e-06"	"2"	"0.0453709272288846"
"Glycolysis / Gluconeogenesis"	"KEGG"	"20"	"0.00135291817831610"	"2"	"0.150390485870567"
"glycine biosynthesis I"	"AraCyc"	"19"	"3.64474213414768e-07"	"5"	"0.00387684760125622"
"photorespiration"	"AraCyc"	"19"	"4.45759209372277e-08"	"5"	"0.00111457209962053"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"19"	"4.14278218133003e-12"	"5"	"8.81999501405583e-05"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"19"	"1.31902971061865e-07"	"3"	"0.00110406526274382"
"ascorbic acid biosynthesis"	"BioPath"	"18"	"2.20578402466113e-05"	"3"	"0.0142745856799525"
"Carotenoid biosynthesis"	"BioPath"	"18"	"1.82133803077810e-07"	"2"	"0.0122209500768915"
"carotenoid biosynthesis"	"AraCyc"	"18"	"7.9921642024151e-10"	"2"	"0.00448518399557328"
"Alanine and aspartate metabolism"	"KEGG"	"18"	"9.58579169101862e-08"	"2"	"0.0161575498789846"
"Glycan Biosynthesis and Metabolism"	"KEGG"	"18"	"0.000216144894714712"	"2"	"0.0965516490786994"
"carotenid biosynthesis"	"LitPath"	"18"	"3.09352685305527e-12"	"2"	"0.00310975043963036"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"18"	"2.08579576310907e-08"	"2"	"0.0207288070282572"
"calmodulin binding"	"TAIR-GO"	"17"	"1.18639895878015e-10"	"2"	"0.00850663850515549"
"photosystem II assembly"	"TAIR-GO"	"17"	"1.01471609273349e-23"	"2"	"3.80570568126382e-05"
"photosystem II stabilization"	"TAIR-GO"	"17"	"0"	"2"	"0"
"colanic acid building blocks biosynthesis"	"AraCyc"	"17"	"0.00287573184050428"	"5"	"0.0141201552802623"
"galactose degradation I"	"AraCyc"	"17"	"1.12691190116412e-19"	"5"	"1.29364893909181e-08"
"glucose conversion"	"AraCyc"	"17"	"2.11618538889783e-05"	"5"	"0.00266576150029374"
"lactose degradation IV"	"AraCyc"	"17"	"1.12691190116412e-19"	"5"	"1.29364893909181e-08"
"UDP-glucose conversion"	"AraCyc"	"17"	"1.48820436836698e-05"	"5"	"0.00233352541722151"
"chlorophyll biosynthesis"	"AraCyc"	"16"	"0.0189789870069628"	"3"	"0.114118658415737"
"gluconeogenesis"	"AraCyc"	"16"	"0.0042664608074684"	"2"	"0.217112417971365"
"transport "	"FunCat"	"16"	"3.78144129266421e-26"	"4"	"0"
"transport facilitation"	"FunCat"	"16"	"0"	"4"	"0"
"Nitrogen metabolism"	"KEGG"	"16"	"0.000176275177451307"	"3"	"0.00211848752728254"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"15"	"0.00062389581335275"	"4"	"0.0176830126886968"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"14"	"0.000140028936547200"	"2"	"0.0197931901033219"
"ascorbate glutathione cycle"	"AraCyc"	"14"	"1.87059583710639e-06"	"2"	"0.0178815330723076"
"cysteine biosynthesis I"	"AraCyc"	"14"	"0.0033509939712983"	"5"	"0.00233352541722151"
"cysteine biosynthesis II"	"AraCyc"	"14"	"1.87439395382576e-07"	"5"	"0.000115839842862422"
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	"14"	"1.96017682063525e-05"	"2"	"0.0103876999133471"
"photorespiration"	"TAIR-GO"	"13"	"3.95992606381234e-12"	"2"	"0.000362170158971953"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"13"	"0.0166810194753374"	"2"	"0.067748989899111"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"12"	"1.10129231404757e-07"	"2"	"0.00987832575015248"
"mannitol degradation"	"AraCyc"	"12"	"5.43517522871522e-05"	"2"	"0.0581793622666678"
"peptidoglycan biosynthesis"	"AraCyc"	"12"	"1.40104125469231e-10"	"2"	"0.00220668424104713"
"sorbitol degradation"	"AraCyc"	"12"	"8.31962189063713e-05"	"2"	"0.0641032678247065"
"sucrose biosynthesis"	"AraCyc"	"12"	"0.00019985069385936"	"2"	"0.0328051996384282"
"sucrose degradation III"	"AraCyc"	"12"	"8.62006116261538e-06"	"2"	"0.0178815330723076"
"trehalose biosynthesis III"	"AraCyc"	"12"	"0.00225311455033156"	"2"	"0.104966371477222"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"12"	"8.88170972299758e-09"	"2"	"0.00141620443967571"
"biosynthesis of phenylpropanoids"	"FunCat"	"11"	"0.00304001138100850"	"2"	"0.0381149021458601"
"biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine"	"FunCat"	"11"	"0.00304001138100850"	"2"	"0.0381149021458601"
"Synthesis of membrane lipids in endomembrane system"	"AcylLipid"	"11"	"0.000778072014129592"	"3"	"0.00702284695305573"
"Chloroplastic protein turnover"	"BioPath"	"10"	"0.000177665555079958"	"1"	"0.103957062877829"
"Early light-inducible proteins"	"BioPath"	"10"	"3.06778879366591e-05"	"2"	"0.00297188054425386"
"FtsH protease (many homologues / subcellular localization ambiguous)"	"BioPath"	"10"	"0"	"1"	"0"
"Glutamate/glutamine from nitrogen fixation"	"BioPath"	"10"	"0.0228737036988091"	"1"	"0.119259585200467"
"Plastocyanin"	"BioPath"	"10"	"5.53981038774999e-10"	"1"	"0.00213442891011844"
"psbP family of thylakoid proteins"	"BioPath"	"10"	"6.8344907854585e-09"	"3"	"6.15502006265512e-05"
"Regulatory enzymes"	"BioPath"	"10"	"1.13176646154289e-07"	"1"	"0.00620836907139356"
"SRP (signal recognition particle)-dependent pathway for integral membrane proteins"	"BioPath"	"10"	"9.27715603649622e-05"	"1"	"0.028312033330618"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"10"	"0.000550809569482777"	"1"	"0.0384480944451637"
"aging"	"TAIR-GO"	"10"	"8.59156958941445e-06"	"1"	"0.0281380553536940"
"carotene biosynthesis"	"TAIR-GO"	"10"	"1.53837897285890e-09"	"1"	"0.00336834227450934"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"10"	"4.55568557829223e-08"	"1"	"0.00658818435998652"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"3.66411518111992e-09"	"1"	"0.00336834227450934"
"enzyme binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucose metabolism"	"TAIR-GO"	"10"	"1.93541072558938e-07"	"1"	"0.0107388604939962"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"1.93541072558938e-07"	"1"	"0.0107388604939962"
"photosynthesis"	"TAIR-GO"	"10"	"0.0115732103844336"	"2"	"0.0285926209313169"
"photosynthetic water oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"plastid organization and biogenesis"	"TAIR-GO"	"10"	"5.911650148314e-10"	"1"	"0.00658818435998652"
"protein binding"	"TAIR-GO"	"10"	"1.17614938849648e-08"	"1"	"0.0107388604939962"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"tetrapyrrole binding"	"TAIR-GO"	"10"	"0"	"1"	"0"
"ammonia assimilation cycle"	"AraCyc"	"10"	"4.58945450252009e-05"	"1"	"0.0388692571905558"
"glutamine biosynthesis I"	"AraCyc"	"10"	"1.40739352851732e-05"	"1"	"0.0237626759876652"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"10"	"3.87677542722377e-07"	"1"	"0.0173779698310967"
"nitrate assimilation pathway"	"AraCyc"	"10"	"0.000304986585207065"	"1"	"0.0474652754893014"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"10"	"3.46230048383656e-06"	"1"	"0.0767402046990551"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"10"	"2.47014700405820e-10"	"1"	"0.0118623207917835"
"serine biosynthesis"	"AraCyc"	"10"	"3.9717887233375e-08"	"4"	"1.08990840403399e-06"
"starch biosynthesis"	"AraCyc"	"10"	"0"	"1"	"0"
"thiamine biosynthesis"	"AraCyc"	"10"	"4.41779348331363e-09"	"1"	"0.0173779698310967"
"C-compound, carbohydrate anabolism"	"FunCat"	"10"	"2.29410167955262e-05"	"1"	"0.0648663687251353"
"energy"	"FunCat"	"10"	"1.60604236874777e-13"	"1"	"0.00142938495242426"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"nitrogen and sulfur metabolism"	"FunCat"	"10"	"0.00393862357536445"	"1"	"0.0710686912463273"
"Glutathione metabolism"	"KEGG"	"10"	"0.0373750986642477"	"1"	"0.166179567295051"
"Glycerolipid metabolism"	"KEGG"	"10"	"0.0163313535178043"	"1"	"0.112358822988219"
"Peptidoglycan biosynthesis"	"KEGG"	"10"	"4.28763205946315e-09"	"1"	"0.00290621551341160"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"10"	"4.07147760125750e-05"	"1"	"0.0404932784778818"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"10"	"0.00308429481658062"	"1"	"0.114059210075620"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"10"	"1.40048462236559e-06"	"1"	"0.0262308609251354"
"phytol biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"calcium ion transport"	"TAIR-GO"	"9"	"1.18990758420834e-10"	"1"	"0.00114815212937821"
"glutamate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nitrogen compound metabolism"	"TAIR-GO"	"9"	"7.0689670811376e-09"	"1"	"0.00336834227450934"
"signal transduction"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine biosynthesis II"	"AraCyc"	"9"	"0.00877122624839548"	"1"	"0.224888988183670"
"alanine degradation III"	"AraCyc"	"9"	"2.89168917516448e-10"	"1"	"0.00373168066016006"
"glutamate degradation I"	"AraCyc"	"9"	"7.7888402976882e-06"	"1"	"0.0309480065698711"
"beta-Alanine metabolism"	"KEGG"	"9"	"0.000685049897178631"	"1"	"0.0466590645724205"
"Butanoate metabolism"	"KEGG"	"9"	"0.00310417888512420"	"1"	"0.0697018351410185"
"Membrane Transport"	"KEGG"	"9"	"6.56772726418455e-05"	"1"	"0.0554818479313049"
"Other ion-coupled transporters"	"KEGG"	"9"	"1.47633859221585e-06"	"1"	"0.0177239018302525"
"Taurine and hypotaurine metabolism"	"KEGG"	"9"	"3.25742245185281e-09"	"1"	"0.00290621551341160"
"chlorophyll biosynthesis"	"LitPath"	"9"	"0.000129848822103406"	"1"	"0.0262308609251354"
"carotenoid biosynthesis"	"TAIR-GO"	"8"	"0.000730773387597441"	"1"	"0.0281380553536940"
"chlorophyll binding"	"TAIR-GO"	"8"	"0.0130349122482747"	"1"	"0.070257506136864"
"photosynthetic electron transport"	"TAIR-GO"	"8"	"1.86382202276678e-05"	"1"	"0.0157549674409321"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"8"	"1.20764494545217e-07"	"1"	"0.00336834227450934"
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	"8"	"0"	"1"	"0"
"response to high light intensity"	"TAIR-GO"	"8"	"1.78812853989555e-07"	"1"	"0.00336834227450934"
"wax biosynthesis"	"TAIR-GO"	"8"	"0.000142907574332838"	"1"	"0.0215743691845822"
"aerobic respiration"	"FunCat"	"8"	"0.00293670220851144"	"1"	"0.042141916559495"
"respiration"	"FunCat"	"8"	"0.00293670220851144"	"1"	"0.042141916559495"
"Ascorbate and aldarate metabolism"	"KEGG"	"8"	"0.0232854165096612"	"2"	"0.00890606324084675"
"N-Glycan biosynthesis"	"KEGG"	"8"	"0.000180297630061385"	"1"	"0.0384187666496886"
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	"8"	"0.0211730137448358"	"1"	"0.277382664725920"
"brassinosteroid mediated signaling"	"TAIR-GO"	"7"	"6.90424929635716e-09"	"1"	"0.00114815212937821"
"carbon monoxide dehydrogenase pathway"	"AraCyc"	"7"	"0.00723288597591852"	"3"	"0.0165415281816621"
"degradation "	"FunCat"	"7"	"0.0147731647034132"	"1"	"0.111800148061490"
"protein degradation "	"FunCat"	"7"	"0.00184838549921538"	"1"	"0.0648663687251353"
"STRESS DATA SET"	"quantDE"	"1.45036"	"maxDE"	"3.23029"	"STRESS DATA SET"
"C-compound and carbohydrate metabolism"	"FunCat"	"60"	"8.43218363599491e-13"	"10"	"0.00139819727832627"
"Intermediary Carbon Metabolism"	"BioPath"	"42"	"1.10644842118025e-11"	"5"	"0.0197064193940069"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"34"	"6.04254846570244e-10"	"4"	"0.00527395447478963"
"Glycolysis / Gluconeogenesis"	"KEGG"	"30"	"1.17031648426334e-12"	"4"	"0.00306627878077188"
"pentose-phosphate pathway "	"FunCat"	"26"	"2.03261107390307e-22"	"3"	"0.000225476996843831"
"Pentose phosphate pathway"	"KEGG"	"26"	"2.74645317220745e-17"	"3"	"0.00185123236932871"
"glycolysis and gluconeogenesis"	"FunCat"	"24"	"0.000104235343416946"	"4"	"0.0298579146770948"
"Biosynthesis of steroids"	"KEGG"	"24"	"8.4359722563664e-10"	"3"	"0.00284277741956205"
"Leaf Glycerolipid Biosynthesis in Plastid"	"BioPath"	"22"	"1.28583388820089e-07"	"3"	"0.00747307949609805"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"22"	"2.47271192630258e-13"	"3"	"0.000158758302505955"
"pentose-phosphate shunt"	"TAIR-GO"	"20"	"1.35356293675572e-19"	"2"	"0.000859587784907718"
"Fructose and mannose metabolism"	"KEGG"	"20"	"1.98536027316185e-09"	"3"	"0.00284277741956205"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"20"	"6.52616937696533e-12"	"2"	"0.00676200496181725"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"19"	"2.95857271982833e-08"	"2"	"0.0229704368995570"
"Gluconeogenesis from lipids in seeds"	"BioPath"	"18"	"2.13702933034684e-05"	"3"	"0.0138122963877564"
"acetate fermentation"	"AraCyc"	"18"	"7.06617753150815e-08"	"3"	"0.00852458200317822"
"fructose degradation (anaerobic)"	"AraCyc"	"18"	"2.77895944166569e-08"	"3"	"0.00651422629978173"
"glycolysis I"	"AraCyc"	"18"	"0.000593284492259632"	"3"	"0.0663172864275599"
"glycolysis IV"	"AraCyc"	"18"	"3.13495365054402e-08"	"3"	"0.00688789181947182"
"mannitol degradation"	"AraCyc"	"18"	"4.14115753074824e-16"	"3"	"0.000193266493014230"
"sorbitol degradation"	"AraCyc"	"18"	"9.15218525114863e-16"	"3"	"0.000226397654153589"
"sorbitol fermentation"	"AraCyc"	"18"	"7.9025081810345e-08"	"3"	"0.00767740096213545"
"Calvin cycle"	"AraCyc"	"16"	"1.95208451435657e-09"	"2"	"0.0102421748042115"
"energy"	"FunCat"	"16"	"3.21507527229581e-29"	"2"	"3.21880075975846e-06"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"16"	"0"	"2"	"0"
"photosynthesis"	"FunCat"	"16"	"7.69048761945531e-06"	"2"	"0.0276580527609223"
"Carbon fixation"	"KEGG"	"16"	"8.47770870632792e-05"	"2"	"0.0524376732879491"
"Glycerolipid metabolism"	"KEGG"	"16"	"7.2372198716111e-08"	"3"	"0.00080804584012489"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"16"	"0.00154715727866574"	"3"	"0.040570417067331"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"14"	"0.0100029763568393"	"2"	"0.0559908819600906"
"Ascorbate and aldarate metabolism"	"KEGG"	"14"	"1.02088185750555e-07"	"2"	"0.00397662828441626"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"14"	"9.37901325851098e-10"	"2"	"0.00126576518341520"
"Pyruvate metabolism"	"KEGG"	"14"	"0.00301245024142789"	"2"	"0.067222711760105"
"starch metabolism"	"BioPath"	"12"	"9.21633150393444e-06"	"2"	"0.00783405137495655"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"11"	"0.0116346048801448"	"2"	"0.138959269177347"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"10"	"0.0179100101446573"	"1"	"0.124448774492569"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"7.74671963189462e-13"	"1"	"0.000563379864387044"
"Carotenoid biosynthesis"	"BioPath"	"10"	"3.87844547307319e-07"	"1"	"0.00962568407404165"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"0.00524403948184444"	"1"	"0.0763184925471845"
"brassinosteroid biosynthesis"	"TAIR-GO"	"10"	"2.5511181653039e-06"	"1"	"0.0162845854302137"
"carotene biosynthesis"	"TAIR-GO"	"10"	"6.5986718065859e-13"	"1"	"0.000813887954833953"
"chloroplast-nucleus signaling pathway"	"TAIR-GO"	"10"	"1.62728486015023e-12"	"1"	"0.000813887954833953"
"glucose metabolism"	"TAIR-GO"	"10"	"1.05843962442004e-10"	"1"	"0.00265615909945578"
"growth"	"TAIR-GO"	"10"	"0.000285197135914478"	"1"	"0.0600865457591298"
"leucine catabolism"	"TAIR-GO"	"10"	"1.04673998115003e-12"	"1"	"0.000813887954833953"
"lipid metabolism"	"TAIR-GO"	"10"	"1.62728486015023e-12"	"1"	"0.000813887954833953"
"pentose-phosphate shunt, oxidative branch"	"TAIR-GO"	"10"	"1.05843962442004e-10"	"1"	"0.00265615909945578"
"phospholipid metabolism"	"TAIR-GO"	"10"	"5.84390302564697e-15"	"1"	"0.000274185583135094"
"phytochromobilin biosynthesis"	"TAIR-GO"	"10"	"1.62728486015023e-12"	"1"	"0.000813887954833953"
"response to light"	"TAIR-GO"	"10"	"0.000417141972909896"	"1"	"0.126835459579614"
"steroid biosynthesis"	"TAIR-GO"	"10"	"2.5511181653039e-06"	"1"	"0.0162845854302137"
"unidimensional cell growth"	"TAIR-GO"	"10"	"2.5511181653039e-06"	"1"	"0.0190445682342757"
"brassinosteroid biosynthesis I"	"AraCyc"	"10"	"5.00945969497933e-07"	"1"	"0.0234266946775575"
"brassinosteroid biosynthesis II"	"AraCyc"	"10"	"7.05943065479683e-10"	"1"	"0.00864992583870145"
"carotenoid biosynthesis"	"AraCyc"	"10"	"1.56620979589716e-07"	"1"	"0.00598874489542065"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"10"	"4.27756327786413e-11"	"1"	"0.00205852595968142"
"leucine degradation I"	"AraCyc"	"10"	"7.8372879844802e-06"	"1"	"0.0330123813910471"
"leucine degradation II"	"AraCyc"	"10"	"6.17880920939393e-09"	"1"	"0.00864992583870145"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"10"	"4.66275464121497e-10"	"1"	"0.0101447106122569"
"phospholipid biosynthesis II"	"AraCyc"	"10"	"2.51539549432612e-06"	"1"	"0.0280523361568382"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"10"	"1.82568100980964e-14"	"1"	"0.00138295222226895"
"thiamine biosynthesis"	"AraCyc"	"10"	"3.68330147108751e-13"	"1"	"0.00205852595968142"
"triacylglycerol biosynthesis"	"AraCyc"	"10"	"3.02308533179878e-10"	"1"	"0.00205852595968142"
"lipid, fatty acid and isoprenoid degradation"	"FunCat"	"10"	"2.51827498448237e-05"	"1"	"0.0615564333294741"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"Citrate cycle (TCA cycle)"	"KEGG"	"10"	"0.00113550459086301"	"1"	"0.099895959555294"
"Fluorene degradation"	"KEGG"	"10"	"9.10783137282896e-07"	"1"	"0.0158461657285181"
"Glutathione metabolism"	"KEGG"	"10"	"0.00204032166285191"	"1"	"0.104041622873236"
"Glycine, serine and threonine metabolism"	"KEGG"	"10"	"0.000441534773302121"	"1"	"0.079942583185123"
"Valine, leucine and isoleucine degradation"	"KEGG"	"10"	"0.000271236746658104"	"1"	"0.0761212389167198"
"carotenid biosynthesis"	"LitPath"	"10"	"1.76858042136416e-06"	"1"	"0.0195410929762410"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"10"	"0.000194361651621468"	"1"	"0.0662974152313839"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"10"	"0.0188419196426164"	"1"	"0.144786621585702"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"10"	"0.000205837764012650"	"1"	"0.060694528607781"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"10"	"5.0954641544666e-08"	"1"	"0.0130972747988101"
"phytochromobilin biosynthesis"	"LitPath"	"10"	"3.09497758319967e-08"	"1"	"0.00782346743922174"
"acetate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"glyoxylate cycle"	"TAIR-GO"	"9"	"0"	"1"	"0"
"Transcription (chloroplast)"	"BioPath"	"8"	"5.32524462030868e-07"	"1"	"0.00380686790620083"
"transcription initiation"	"TAIR-GO"	"8"	"1.89112038890228e-06"	"1"	"0.0072054577887087"
"gibberellic acid biosynthesis"	"TAIR-GO"	"7"	"0.000378534147431274"	"1"	"0.0137137524893293"
"photomorphogenesis"	"TAIR-GO"	"7"	"3.08105197097338e-10"	"1"	"0.000813887954833953"
"mRNA synthesis "	"FunCat"	"7"	"0.00155747201323071"	"1"	"0.0615564333294741"
"RNA synthesis "	"FunCat"	"7"	"0.00155747201323071"	"1"	"0.0615564333294741"
"transcription"	"FunCat"	"7"	"6.62263405668805e-06"	"1"	"0.0180578589992391"
"transcriptional control"	"FunCat"	"7"	"4.97551383637486e-05"	"1"	"0.0133502423662003"
"HORMONE DATA SET"	"quantDE"	"0.9054221"	"maxDE"	"1.2728095"	"HORMONE DATA SET"
"MUTANT DATA SET"	"quantDE"	"1.225373"	"maxDE"	"3.320957987"	"MUTANT DATA SET"
"Photosystems "	"BioPath"	"341"	"4.24791786639587e-101"	"49"	"5.9566003490312e-19"
"Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)"	"BioPath"	"184"	"3.83483733014373e-17"	"22"	"0.000169487806337713"
"C-compound and carbohydrate metabolism"	"FunCat"	"175"	"2.21737300723496e-06"	"27"	"0.0444088115118209"
"biogenesis of chloroplast"	"FunCat"	"167"	"2.77124874683569e-67"	"25"	"3.31113005025094e-14"
"photosynthesis"	"FunCat"	"150"	"1.52376938920413e-81"	"22"	"4.19203686885771e-15"
"additional photosystem II components"	"BioPath"	"136"	"5.02948959037003e-40"	"18"	"4.01308693612462e-08"
"Photosynthesis"	"KEGG"	"131"	"6.61145503618082e-95"	"22"	"4.82923568819416e-20"
"Photosystem I"	"BioPath"	"121"	"7.34798928966234e-18"	"20"	"2.56707587993381e-06"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"103"	"6.69475733840922e-20"	"12"	"0.000100437881732300"
"Chlorophyll a/b binding proteins"	"BioPath"	"102"	"1.29463284097596e-46"	"13"	"1.54854477910403e-09"
"glycolysis and gluconeogenesis"	"FunCat"	"101"	"6.6736027858975e-08"	"15"	"0.0159258116486548"
"chlorophyll and phytochromobilin metabolism"	"LitPath"	"97"	"5.46568421808039e-31"	"11"	"4.31283308006116e-06"
"Carbon fixation"	"KEGG"	"92"	"3.05032523223300e-21"	"14"	"2.58243508980835e-05"
"chlorophyll biosynthesis"	"AraCyc"	"90"	"6.3530170627021e-27"	"11"	"0.00139577456590123"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"83"	"1.12928970386e-35"	"10"	"7.28007578438379e-07"
"transport "	"FunCat"	"81"	"0"	"13"	"0"
"chlorophyll biosynthesis"	"TAIR-GO"	"75"	"2.81587654823006e-36"	"8"	"1.78244123762829e-06"
"Photosystem II"	"BioPath"	"67"	"3.00903734832193e-05"	"9"	"0.0212127291870245"
"Biosynthesis of steroids"	"KEGG"	"67"	"2.01873740068722e-09"	"7"	"0.012739018356635"
"photorespiration"	"AraCyc"	"62"	"3.02265616645117e-29"	"12"	"2.44947065284573e-06"
"Calvin cycle"	"AraCyc"	"60"	"1.46377338143501e-18"	"11"	"5.65600916975451e-05"
"Glycolysis / Gluconeogenesis"	"KEGG"	"58"	"0.000251276370230729"	"9"	"0.0391434851512572"
"photosystem I"	"TAIR-GO"	"57"	"0"	"7"	"0"
"Nitrogen metabolism"	"KEGG"	"56"	"5.91383249468589e-11"	"8"	"0.000226741880233409"
"acetate fermentation"	"AraCyc"	"52"	"6.42525214832316e-06"	"10"	"0.0325311203633353"
"triterpene, sterol, and brassinosteroid metabolism"	"LitPath"	"52"	"0.0346577254801968"	"6"	"0.343851351363204"
"transport facilitation"	"FunCat"	"51"	"0"	"7"	"0"
"chlorophyll binding"	"TAIR-GO"	"50"	"4.04650982113469e-21"	"6"	"0.000133688847753901"
"fructose degradation (anaerobic)"	"AraCyc"	"50"	"5.28459363985132e-06"	"9"	"0.0453367680411006"
"glycolysis IV"	"AraCyc"	"50"	"6.59378651233148e-06"	"9"	"0.0497334981276935"
"sorbitol fermentation"	"AraCyc"	"50"	"3.43211450871121e-05"	"9"	"0.0593619710811098"
"chlorophyll biosynthesis"	"LitPath"	"49"	"8.71390159020038e-27"	"5"	"2.07943336990088e-05"
"gluconeogenesis"	"AraCyc"	"48"	"2.17554340577412e-07"	"7"	"0.0391361195083108"
"respiration"	"FunCat"	"44"	"9.56333953767116e-18"	"6"	"5.55281217156926e-05"
"fatty acid biosynthesis"	"TAIR-GO"	"42"	"1.45060749737892e-11"	"5"	"0.00290037519259312"
"Synthesis of fatty acids in plastids"	"AcylLipid"	"42"	"1.32890104816543e-11"	"6"	"0.00229217888945640"
"photosystem II"	"TAIR-GO"	"41"	"0"	"5"	"0"
"Ascorbate and aldarate metabolism"	"KEGG"	"41"	"7.84858431703552e-10"	"5"	"0.00617040620441409"
"Glycine, serine and threonine metabolism"	"KEGG"	"41"	"1.88058947075547e-07"	"7"	"0.00270638826918998"
"response to light"	"TAIR-GO"	"40"	"3.04012341702047e-05"	"5"	"0.191137281992040"
"glycerol degradation II"	"AraCyc"	"40"	"8.95638970221001e-06"	"7"	"0.0391361195083108"
"aerobic respiration"	"FunCat"	"40"	"1.29694849898160e-14"	"5"	"0.000542688762457427"
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	"40"	"0.00104946505547872"	"5"	"0.0909717330244682"
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	"39"	"1.02452329829693e-08"	"5"	"0.00396795672598887"
"light harvesting complex"	"BioPath"	"38"	"1.33625806023356e-23"	"5"	"4.19656398147329e-06"
"Glutamate metabolism"	"KEGG"	"38"	"0.00611399060951057"	"4"	"0.176327926669970"
"ascorbic acid biosynthesis"	"BioPath"	"36"	"0.000109507220627080"	"5"	"0.0424041012080443"
"glycine biosynthesis I"	"AraCyc"	"36"	"9.10865705015564e-08"	"8"	"0.0106327148028772"
"superpathway of serine and glycine biosynthesis II"	"AraCyc"	"36"	"4.63423724463613e-17"	"8"	"4.89563307650583e-05"
"Selenoamino acid metabolism"	"KEGG"	"36"	"4.1971765006534e-05"	"4"	"0.053483095703402"
"Pathway for nuclear-encoded, thylakoid-localized proteins"	"BioPath"	"34"	"1.65013819303494e-06"	"4"	"0.0177852886670868"
"photorespiration"	"TAIR-GO"	"34"	"0"	"5"	"0"
"fatty acid biosynthesis -- initial steps"	"AraCyc"	"34"	"9.12926593630606e-06"	"5"	"0.0559803322176001"
"Pentose phosphate pathway"	"KEGG"	"34"	"0.000126430537301034"	"6"	"0.0212921419559556"
"Carotenoid and abscisic acid metabolism"	"LitPath"	"34"	"6.82081463549762e-06"	"4"	"0.0268119284008254"
"electron transport"	"TAIR-GO"	"32"	"2.51154126386047e-05"	"4"	"0.0524299842982745"
"cellulose biosynthesis"	"AraCyc"	"32"	"0.0097136480018545"	"6"	"0.0855502041645631"
"glyceraldehyde 3-phosphate degradation"	"AraCyc"	"32"	"2.86196608796215e-09"	"5"	"0.0121295244067189"
"brassinosteroid biosynthesis"	"LitPath"	"32"	"0.000469852302711505"	"4"	"0.0268119284008254"
"sterol and brassinosteroid biosynthesis"	"LitPath"	"32"	"9.31356568308708e-07"	"4"	"0.00591140311125152"
"lactose degradation IV"	"AraCyc"	"31"	"0"	"8"	"0"
"Cytochrome b6/f complex"	"BioPath"	"30"	"5.13871865929084e-12"	"3"	"0.0195272112358167"
"photosynthesis"	"TAIR-GO"	"30"	"0.000232146074812814"	"4"	"0.0524299842982745"
"sterol biosynthesis"	"TAIR-GO"	"30"	"0.00336220281670572"	"3"	"0.154141200146594"
"ascorbate glutathione cycle"	"AraCyc"	"30"	"1.85068540126578e-09"	"4"	"0.00975532178041225"
"biosynthesis of proto- and siroheme"	"AraCyc"	"30"	"0.0155166815173699"	"5"	"0.144858072922525"
"formylTHF biosynthesis"	"AraCyc"	"30"	"1.0800914921632e-10"	"5"	"0.00324570617050253"
"sterol biosynthesis"	"AraCyc"	"30"	"0.000150429078546754"	"3"	"0.091632717716982"
"Methionine metabolism"	"KEGG"	"30"	"4.34529409605524e-07"	"3"	"0.0458845743599956"
"Carotenoid biosynthesis"	"BioPath"	"28"	"0.000171535032847714"	"3"	"0.0415528919320288"
"Glutamate/glutamine from nitrogen fixation"	"BioPath"	"28"	"0.00276819560459369"	"3"	"0.0733171585956627"
"photosystem I reaction center"	"BioPath"	"28"	"8.53039764281332e-14"	"6"	"1.50689854629210e-05"
"porphyrin biosynthesis"	"TAIR-GO"	"28"	"1.85245436880719e-07"	"4"	"0.00804037327623791"
"carotenoid biosynthesis"	"AraCyc"	"28"	"1.48434709922135e-08"	"3"	"0.00795286461605598"
"nitrate assimilation pathway"	"AraCyc"	"28"	"2.59430984045394e-09"	"3"	"0.00795286461605598"
"nitrogen and sulfur metabolism"	"FunCat"	"28"	"0.000924159498945085"	"3"	"0.0624577178076538"
"Alanine and aspartate metabolism"	"KEGG"	"28"	"0.00147252603335306"	"3"	"0.165652571836468"
"Citrate cycle (TCA cycle)"	"KEGG"	"28"	"0.0324398862562866"	"4"	"0.153052757135194"
"carotenid biosynthesis"	"LitPath"	"28"	"4.65794223701889e-08"	"3"	"0.0100633283356627"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"28"	"2.71883935652041e-08"	"4"	"0.00421487669758661"
"IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis"	"LitPath"	"27"	"0.00291013735329515"	"3"	"0.0825516467594694"
"photosystem I subunit precursor"	"BioPath"	"26"	"0"	"5"	"0"
"photosystem II type I  chlorophyll a /b binding protein"	"BioPath"	"26"	"3.83824961100726e-15"	"3"	"0.000262890260671423"
"calmodulin binding"	"TAIR-GO"	"26"	"3.59654661737270e-08"	"3"	"0.0406136504312734"
"Cysteine metabolism"	"KEGG"	"26"	"0.00329756081903749"	"3"	"0.114115659357407"
"Fatty acid biosynthesis (path 1)"	"KEGG"	"26"	"3.01612186054812e-07"	"3"	"0.0387584515061454"
"Sulfur metabolism"	"KEGG"	"26"	"0.00358291166236802"	"3"	"0.0621689887232238"
"Early light-inducible proteins"	"BioPath"	"24"	"1.60726457944264e-08"	"3"	"0.0066906504084829"
"embryonic development"	"TAIR-GO"	"24"	"0.0214745492621481"	"3"	"0.133798956976930"
"unidimensional cell growth"	"TAIR-GO"	"24"	"0.000416738297067465"	"3"	"0.0406136504312734"
"energy"	"FunCat"	"24"	"0"	"3"	"0"
"galactose degradation I"	"AraCyc"	"23"	"1.68624871512881e-20"	"6"	"3.76223516676293e-08"
"glucose conversion"	"AraCyc"	"23"	"0.0289530559279724"	"6"	"0.0560061843084773"
"UDP-glucose conversion"	"AraCyc"	"23"	"0.0219674002548735"	"6"	"0.0497833637542092"
"Translation (chloroplast)"	"BioPath"	"22"	"2.03198170314050e-08"	"4"	"0.000559468699123153"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"22"	"0.00423341793761833"	"4"	"0.0344805822212621"
"cellulose biosynthesis"	"TAIR-GO"	"22"	"1.37703896769261e-07"	"4"	"0.00344769114390159"
"photosynthetic electron transport"	"TAIR-GO"	"22"	"2.86837689906318e-11"	"3"	"0.00154872079472951"
"glycine degradation I"	"AraCyc"	"22"	"7.647843879161e-15"	"5"	"2.90978745761484e-05"
"Cyanoamino acid metabolism"	"KEGG"	"22"	"0.00020219269438409"	"4"	"0.0264306622547556"
"ATP synthase components"	"BioPath"	"20"	"0.00190756309317797"	"3"	"0.029327589899943"
"Delta-pH pathway"	"BioPath"	"20"	"1.53315319048358e-14"	"2"	"0.00207260803725774"
"Oxygen-evolving enhancer protein"	"BioPath"	"20"	"1.40795574690907e-09"	"2"	"0.0169822768491939"
"Plastocyanin"	"BioPath"	"20"	"0"	"2"	"0"
"brassinosteroid biosynthesis"	"TAIR-GO"	"20"	"0.0102691712329189"	"2"	"0.125976415028185"
"carotene biosynthesis"	"TAIR-GO"	"20"	"1.21554772027679e-14"	"2"	"0.00117436744756546"
"chloroplast thylakoid membrane protein import"	"TAIR-GO"	"20"	"4.63254632363845e-11"	"2"	"0.00432898204523491"
"methionine biosynthesis"	"TAIR-GO"	"20"	"2.25053585224725e-11"	"2"	"0.00432898204523491"
"photosynthetic water oxidation"	"TAIR-GO"	"20"	"0"	"2"	"0"
"steroid biosynthesis"	"TAIR-GO"	"20"	"0.0102691712329189"	"2"	"0.125976415028185"
"ammonia assimilation cycle"	"AraCyc"	"20"	"3.45841925562524e-06"	"2"	"0.0376262017074731"
"glutamine biosynthesis I"	"AraCyc"	"20"	"3.6694756629083e-07"	"2"	"0.0178902053541235"
"homocysteine and cysteine interconversion"	"AraCyc"	"20"	"1.39574173634384e-07"	"2"	"0.0503433461752232"
"methionine biosynthesis II"	"AraCyc"	"20"	"3.35196207152098e-05"	"2"	"0.0987809895596008"
"phospholipid desaturation pathway"	"AraCyc"	"20"	"4.45613367639065e-09"	"2"	"0.00584049703355776"
"UDP-N-acetylglucosamine biosynthesis"	"AraCyc"	"20"	"1.12212352147267e-09"	"2"	"0.0178902053541235"
"biosynthesis of derivatives of homoisopentenyl pyrophosphate "	"FunCat"	"20"	"0.00176298616534373"	"2"	"0.103112691940385"
"transported compounds (substrates)"	"FunCat"	"20"	"0"	"3"	"0"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio"	"KEGG"	"20"	"8.03478294005432e-09"	"2"	"0.0204568890742913"
"1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation"	"KEGG"	"20"	"3.53257934983980e-11"	"2"	"0.00569794966288324"
"Androgen and estrogen metabolism"	"KEGG"	"20"	"1.01794392209004e-10"	"2"	"0.00946155357290681"
"Benzoate degradation via hydroxylation"	"KEGG"	"20"	"2.88942816791435e-06"	"2"	"0.0277462189620555"
"Terpenoid biosynthesis"	"KEGG"	"20"	"0.0204240825207792"	"2"	"0.194191619684362"
"Tryptophan metabolism"	"KEGG"	"20"	"0.0348573352560129"	"4"	"0.0835431777497354"
"metabolism of acyl-lipids in mitochondria"	"AcylLipid"	"20"	"0.000549823424417793"	"2"	"0.121307130568214"
"Synthesis of membrane lipids in plastids"	"AcylLipid"	"20"	"0.00132859537436767"	"2"	"0.0662535651610218"
"hypersensitive response"	"TAIR-GO"	"19"	"6.17267920890442e-07"	"2"	"0.0184072402417581"
"Fluorene degradation"	"KEGG"	"19"	"0.00084280801537947"	"2"	"0.0814106738813526"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"19"	"0.00507306349127629"	"2"	"0.109971769164804"
"mRNA processing in chloroplast"	"BioPath"	"18"	"0.000971096999392876"	"5"	"0.00196300339381841"
"Thylakoid biogenesis and photosystem assembly"	"BioPath"	"18"	"0.00720458805579926"	"2"	"0.0488425246603312"
"nonphotochemical quenching"	"TAIR-GO"	"18"	"0"	"2"	"0"
"photosynthesis light harvesting"	"TAIR-GO"	"18"	"1.81278269599556e-05"	"2"	"0.0439129602397716"
"primary cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"18"	"4.1357582523517e-14"	"3"	"0.000122829248342305"
"protein biosynthesis"	"TAIR-GO"	"18"	"0"	"3"	"0"
"regulation of transcription"	"TAIR-GO"	"18"	"0"	"2"	"0"
"serine biosynthesis"	"AraCyc"	"18"	"1.89186084746726e-10"	"6"	"3.76223516676293e-08"
"C-compound and carbohydrate utilization "	"FunCat"	"18"	"0"	"3"	"0"
"Tetracycline biosynthesis"	"KEGG"	"18"	"3.17669159681067e-11"	"2"	"0.00126644377650742"
"photosystem II assembly"	"TAIR-GO"	"17"	"1.41293065740444e-14"	"2"	"0.00117436744756546"
"photosystem II stabilization"	"TAIR-GO"	"17"	"0"	"2"	"0"
"Membrane Transport"	"KEGG"	"17"	"0.000899030678244036"	"3"	"0.0621689887232238"
"Other ion-coupled transporters"	"KEGG"	"17"	"2.36775486126318e-06"	"3"	"0.00727273802725054"
"MEP (methylerythritol P) pathway, plastids"	"LitPath"	"17"	"0.000133716044164728"	"2"	"0.0343090242088865"
"Ferredoxin"	"BioPath"	"16"	"0.000197368143070725"	"3"	"0.0195272112358167"
"magnesium chelatase complex"	"TAIR-GO"	"16"	"0"	"2"	"0"
"protein folding"	"TAIR-GO"	"16"	"0"	"2"	"0"
"PSII associated light-harvesting complex II"	"TAIR-GO"	"16"	"0"	"2"	"0"
"response to high light intensity"	"TAIR-GO"	"16"	"1.43568781892333e-10"	"2"	"0.00117436744756546"
"atty acid elongation -- unsaturated"	"AraCyc"	"16"	"0.0143217125858641"	"3"	"0.0784847256066278"
"fatty acid elongation -- saturated"	"AraCyc"	"16"	"0.0298124274574141"	"3"	"0.091632717716982"
"fatty acid elongation -- unsaturated"	"AraCyc"	"16"	"0.0116762775816838"	"3"	"0.066356803446459"
"oxidative branch of the pentose phosphate pathway"	"AraCyc"	"16"	"1.43084652793733e-05"	"4"	"0.00358142940593265"
"channel / pore class transport"	"FunCat"	"15"	"0.000183794034307647"	"2"	"0.103112691940385"
"Transcription (chloroplast)"	"BioPath"	"14"	"0.0415472877442147"	"2"	"0.0488425246603312"
"lipid biosynthesis"	"TAIR-GO"	"14"	"0.00040429474614292"	"2"	"0.00997798051824382"
"photosystem II antenna complex"	"TAIR-GO"	"14"	"8.46302364236878e-11"	"2"	"0.00117436744756546"
"plastid organization and biogenesis"	"TAIR-GO"	"14"	"2.12079951736781e-08"	"2"	"0.00432898204523491"
"transcription initiation"	"TAIR-GO"	"14"	"0.00693821834555669"	"2"	"0.0439129602397716"
"cyanate degradation"	"AraCyc"	"14"	"3.34298170392131e-07"	"3"	"0.0219276736430330"
"non-oxidative branch of the pentose phosphate pathway"	"AraCyc"	"14"	"0.000220042718622239"	"3"	"0.0219276736430330"
"threonine degradation"	"AraCyc"	"14"	"0.00337180970196841"	"5"	"0.0075722728151178"
"accessory proteins of electron transport and membrane-associated energy conservation"	"FunCat"	"14"	"6.98401633120429e-13"	"2"	"0.000451660375742414"
"electron transport and membrane-associated energy conservation "	"FunCat"	"14"	"2.79660518045071e-05"	"2"	"0.0267553126239414"
"One carbon pool by folate"	"KEGG"	"14"	"0.000306424104928144"	"3"	"0.0131662081445295"
"glutamate degradation I"	"AraCyc"	"13"	"0.000201586549989679"	"2"	"0.0267913950928451"
"protein degradation "	"FunCat"	"13"	"0.035305223357158"	"2"	"0.175941136178489"
"Plastoquinone biosynthesis"	"BioPath"	"12"	"0"	"2"	"0"
"glycine decarboxylation via glycine cleavage system"	"TAIR-GO"	"12"	"0"	"2"	"0"
"accessory proteins of photosynthetic electron transport "	"FunCat"	"12"	"0"	"2"	"0"
"detoxification"	"FunCat"	"11"	"0"	"2"	"0"
"brassinosteroid biosynthesis"	"BioPath"	"10"	"0.00422207464273599"	"1"	"0.0447486530536714"
"Transcriptional regulators (chloroplast)"	"BioPath"	"10"	"5.93209308167806e-05"	"1"	"0.0162979563760623"
"ATP synthesis coupled proton transport"	"TAIR-GO"	"10"	"0.00736429865804076"	"1"	"0.0900968666281517"
"biotin binding"	"TAIR-GO"	"10"	"3.27730833235149e-06"	"1"	"0.0111792940032809"
"chlorophyll catabolism"	"TAIR-GO"	"10"	"0.000350786787268164"	"1"	"0.0311891471147117"
"chloroplast ATP synthase complex"	"TAIR-GO"	"10"	"3.27730833235149e-06"	"1"	"0.0111792940032809"
"chloroplast organization and biogenesis"	"TAIR-GO"	"10"	"0.000172061239603394"	"1"	"0.125941679821348"
"cytochrome b6f complex"	"TAIR-GO"	"10"	"0.00736429865804076"	"1"	"0.125941679821348"
"extrinsic to photosynthetic water oxidation"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glucosinolate catabolism"	"TAIR-GO"	"10"	"1.64915206252220e-06"	"1"	"0.0111792940032809"
"glutathione metabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"glycine catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"heme biosynthesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"methionine biosynthesis from L-homoserine via cystathione"	"TAIR-GO"	"10"	"0"	"1"	"0"
"photoinhibition"	"TAIR-GO"	"10"	"0.000116712917746718"	"1"	"0.0311891471147117"
"photosynthetic electron transport in cytochrome b6/f"	"TAIR-GO"	"10"	"1.39076334315622e-08"	"1"	"0.0111792940032809"
"plastoquinone biosynthesis"	"TAIR-GO"	"10"	"3.27730833235149e-06"	"1"	"0.0111792940032809"
"positive regulation of transcription"	"TAIR-GO"	"10"	"0.000248150748560693"	"1"	"0.0311891471147117"
"protein binding"	"TAIR-GO"	"10"	"0.000892490541962392"	"1"	"0.0900968666281517"
"protein complex assembly"	"TAIR-GO"	"10"	"0"	"1"	"0"
"proton transport"	"TAIR-GO"	"10"	"0.00736429865804076"	"1"	"0.0900968666281517"
"response to chemical substance"	"TAIR-GO"	"10"	"0"	"1"	"0"
"response to oxidative stress"	"TAIR-GO"	"10"	"0.000116712917746718"	"1"	"0.0900968666281517"
"response to toxin"	"TAIR-GO"	"10"	"0"	"1"	"0"
"thylakoid membrane organization and biogenesis"	"TAIR-GO"	"10"	"0"	"1"	"0"
"vitamin E biosynthesis"	"TAIR-GO"	"10"	"0.00494656828042531"	"1"	"0.0580493121841885"
"xenobiotic catabolism"	"TAIR-GO"	"10"	"0"	"1"	"0"
"ascorbate biosynthesis"	"AraCyc"	"10"	"0.00370158464295522"	"1"	"0.183215579752061"
"brassinosteroid biosynthesis II"	"AraCyc"	"10"	"0.0233769057907710"	"1"	"0.283932247334727"
"glucose and glucose-1-phosphate degradation"	"AraCyc"	"10"	"0.0263998530950116"	"1"	"0.317596112384750"
"glycosylglyceride desaturation pathway"	"AraCyc"	"10"	"0.000800377285608318"	"1"	"0.0408073067946373"
"isopentenyl diphosphate biosynthesis -- mevalonate-independent"	"AraCyc"	"10"	"0.00370158464295522"	"1"	"0.0907147995629586"
"methionine and S-adenosylmethionine synthesis"	"AraCyc"	"10"	"0.00102443088448072"	"1"	"0.0907147995629586"
"methionine degradation I"	"AraCyc"	"10"	"0.0458171630892087"	"1"	"0.216433638146271"
"peptidoglycan biosynthesis"	"AraCyc"	"10"	"0.00047238228274602"	"1"	"0.150862384631042"
"plastoquinone biosynthesis"	"AraCyc"	"10"	"4.74419400073722e-05"	"1"	"0.0408073067946373"
"pyridoxal 5'-phosphate biosynthesis"	"AraCyc"	"10"	"8.09544720786169e-06"	"1"	"0.0641185133020237"
"starch biosynthesis"	"AraCyc"	"10"	"0"	"1"	"0"
"thiamine biosynthesis"	"AraCyc"	"10"	"9.96581406288138e-05"	"1"	"0.0907147995629586"
"vitamin E biosynthesis"	"AraCyc"	"10"	"0.0296951464110082"	"1"	"0.119844637246493"
"biosynthesis of glycosides"	"FunCat"	"10"	"1.81698202831733e-07"	"1"	"0.0168252978627405"
"detoxification by modification"	"FunCat"	"10"	"1.81698202831733e-07"	"1"	"0.0168252978627405"
"electron / hydrogen transport "	"FunCat"	"10"	"0.000467820698550416"	"1"	"0.0720624471408216"
"ionic homeostasis "	"FunCat"	"10"	"0"	"1"	"0"
"lipid transport "	"FunCat"	"10"	"9.86140502206301e-05"	"2"	"0.0188947084050512"
"lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"1"	"0"
"metabolismn of primary metabolic sugars derivatives "	"FunCat"	"10"	"1.81698202831733e-07"	"1"	"0.0168252978627405"
"nucleotide metabolism"	"FunCat"	"10"	"0"	"3"	"0"
"Peptidoglycan biosynthesis"	"KEGG"	"10"	"0.00108622112452249"	"1"	"0.0419535342930236"
"chlorophyll a biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"chlorophyll catabolism"	"LitPath"	"10"	"0.000138807927229726"	"1"	"0.0203558708666855"
"phytol biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"carbohydrate biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"glutamate metabolism"	"TAIR-GO"	"9"	"0"	"1"	"0"
"nitrogen compound metabolism"	"TAIR-GO"	"9"	"0.000285941030271466"	"1"	"0.0311891471147117"
"phosphate transport"	"TAIR-GO"	"9"	"0.000416353709505658"	"1"	"0.0580493121841885"
"signal transduction"	"TAIR-GO"	"9"	"0"	"1"	"0"
"sucrose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"alanine degradation III"	"AraCyc"	"9"	"4.39553603178258e-06"	"1"	"0.0216528706319147"
"Taurine and hypotaurine metabolism"	"KEGG"	"9"	"0.000395046134170623"	"1"	"0.0419535342930236"
"biosynthesis of extracellular lipids"	"LitPath"	"9"	"0"	"1"	"0"
"psbP family of thylakoid proteins"	"BioPath"	"8"	"0.00795448426337"	"2"	"0.0307774356952533"
"chloroplastic endopeptidase Clp complex"	"TAIR-GO"	"8"	"0.00344060240236533"	"2"	"0.0297266549343466"
"fatty acid desaturation"	"TAIR-GO"	"8"	"0.00140673521997074"	"1"	"0.0311891471147117"
"nitrate assimilation"	"TAIR-GO"	"8"	"0.00140673521997074"	"1"	"0.0311891471147117"
"photosynthetic electron transport in photosystem I"	"TAIR-GO"	"8"	"0.00140673521997074"	"1"	"0.0311891471147117"
"photosystem I (sensu Viridiplantae)"	"TAIR-GO"	"8"	"0"	"1"	"0"
"photosystem I antenna complex"	"TAIR-GO"	"8"	"0"	"1"	"0"
"response to reactive oxygen species"	"TAIR-GO"	"8"	"0"	"1"	"0"
"transcription factor binding"	"TAIR-GO"	"8"	"0"	"1"	"0"
"ribose degradation"	"AraCyc"	"8"	"0.0120126774555797"	"2"	"0.0810456089634698"
"isopentenyl diphosphate biosynthesis, mevalonate-independent pathway"	"TAIR-GO"	"7"	"0"	"1"	"0"
"one-carbon compound metabolism"	"TAIR-GO"	"7"	"0.00981674236200012"	"1"	"0.0580493121841885"