"Pathway"	"Pathway.source"	"Annotation.score"	"p.value.score"	"No.of.genes"	"p.value.genes"
"IN THREE DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"ORGAN DATA SET"	"quantDE"	"2.453913"	"maxDE"	"4.3678993"	"ORGAN DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	"22"	"9.68685007096241e-10"	"4"	"0.0234021442314499"
"GDP-carbohydrate biosynthesis"	"BioPath"	"10"	"3.01014658333865e-16"	"1"	"0.00113710282613835"
"colanic acid building blocks biosynthesis"	"AraCyc"	"10"	"2.43666932466943e-09"	"1"	"0.00808904698856997"
"dTDP-rhamnose biosynthesis"	"AraCyc"	"10"	"8.40174505304894e-11"	"1"	"0.0048263685328903"
"galactose degradation I"	"AraCyc"	"10"	"4.03204758939513e-20"	"1"	"0.000117779057913511"
"glucose conversion"	"AraCyc"	"10"	"3.35061864568392e-11"	"1"	"0.00418572637237795"
"lactose degradation IV"	"AraCyc"	"10"	"4.03204758939513e-20"	"1"	"0.000117779057913511"
"UDP-glucose conversion"	"AraCyc"	"10"	"2.53510352113556e-11"	"1"	"0.00398176466475723"
"Fructose and mannose metabolism"	"KEGG"	"10"	"8.70319920728017e-15"	"1"	"0.00276264593319015"
"STRESS DATA SET"	"quantDE"	"1.739209"	"maxDE"	"5.88723"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"1.675695"	"maxDE"	"2.6284234"	"HORMONE DATA SET"
"tryptophan catabolism"	"TAIR-GO"	"10"	"2.02177492054309e-32"	"1"	"5.19290877149799e-07"
"glucosinolate biosynthesis from tryptophan"	"AraCyc"	"10"	"7.86017572483581e-23"	"1"	"5.64238072285098e-06"
"IAA biosynthesis"	"AraCyc"	"10"	"7.98014804555495e-17"	"1"	"0.000123387506851036"
"IAA biosynthesis I"	"AraCyc"	"10"	"1.46419748333257e-18"	"1"	"6.74374779021592e-05"
"Ascorbate and aldarate metabolism"	"KEGG"	"10"	"2.84868678751805e-14"	"1"	"0.000235730706840087"
"Fluorene degradation"	"KEGG"	"10"	"1.17856483530723e-16"	"1"	"8.2789750449714e-05"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"10"	"6.18976963224809e-16"	"1"	"0.000107158811432231"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"10"	"8.01143630943831e-11"	"1"	"0.00371545947129825"
"Glucosinolate Metabolism"	"LitPath"	"10"	"0"	"1"	"0"
"MUTANT DATA SET"	"quantDE"	"1.723982"	"maxDE"	"5.524770121"	"MUTANT DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"74"	"5.06986956228403e-23"	"11"	"0.000141914452679705"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"48"	"1.02348835331998e-27"	"7"	"1.16529238107554e-05"
"Shikimate pathway"	"LitPath"	"48"	"2.71682282868144e-18"	"7"	"0.000160204086580552"
"tryptophan biosynthesis"	"AraCyc"	"46"	"2.40342364738679e-43"	"7"	"2.34935696745493e-08"
"Phenylpropanoid pathway"	"LitPath"	"46"	"3.13115322180631e-10"	"8"	"0.00460341635956215"
"tryptophan biosynthesis"	"TAIR-GO"	"44"	"1.15220120374028e-42"	"6"	"3.37175167477757e-08"
"Trp biosyntesis"	"LitPath"	"44"	"2.40258481157462e-30"	"6"	"2.27972179305649e-06"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"38"	"0.000292533286669415"	"5"	"0.126126473977675"
"response to pathogenic bacteria"	"TAIR-GO"	"34"	"1.7124024696665e-54"	"5"	"0"
"lignin biosynthesis"	"AraCyc"	"30"	"3.17756238013696e-15"	"5"	"0.000220605731631006"
"core phenylpropanoid metabolism"	"BioPath"	"26"	"9.35513774574565e-11"	"4"	"0.00207304019726206"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"26"	"6.29413594159504e-15"	"3"	"0.0030410411377319"
"Lipid signaling"	"AcylLipid"	"26"	"6.15025411782021e-05"	"7"	"0.0534774750109252"
"Benzoate degradation via CoA ligation"	"KEGG"	"24"	"6.1445611142855e-07"	"5"	"0.0138229982267781"
"Inositol phosphate metabolism"	"KEGG"	"24"	"3.60751138873339e-06"	"5"	"0.0204096355370235"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"24"	"4.18649866453392e-08"	"5"	"0.0094280310801792"
"Stilbene, coumarine and lignin biosynthesis"	"KEGG"	"23"	"1.56475439126063e-06"	"4"	"0.0691194246326145"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"22"	"8.83908126180644e-08"	"3"	"0.0147913210967896"
"Propanoate metabolism"	"KEGG"	"22"	"1.78618022721727e-12"	"3"	"0.00409204406072312"
"Nucleotide sugars metabolism"	"KEGG"	"18"	"1.29590040914443e-13"	"5"	"2.25112933440735e-06"
"Ascorbate and aldarate metabolism"	"KEGG"	"17"	"5.51143426722799e-08"	"2"	"0.017384856686902"
"Fluorene degradation"	"KEGG"	"17"	"1.74976221811932e-11"	"2"	"0.00403891873217246"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"17"	"2.1602964137931e-10"	"2"	"0.00584446993936386"
"ethylene biosynthesis"	"TAIR-GO"	"16"	"6.81216967774107e-16"	"2"	"0.000582225848656134"
"jasmonic acid biosynthesis"	"TAIR-GO"	"16"	"3.95779281181221e-09"	"2"	"0.00844077200740842"
"jasmonic acid biosynthesis"	"AraCyc"	"16"	"1.07914992126512e-09"	"2"	"0.00526806867624682"
"C-compound and carbohydrate utilization "	"FunCat"	"16"	"0"	"3"	"0"
"response to wounding"	"TAIR-GO"	"14"	"4.8399351310998e-06"	"2"	"0.0127859774031139"
"toxin catabolism"	"TAIR-GO"	"14"	"1.62149446436398e-07"	"7"	"4.58849617840940e-06"
"biosynthesis of proto- and siroheme"	"AraCyc"	"14"	"4.01761010994632e-05"	"2"	"0.0493698516326678"
"chlorophyll biosynthesis"	"AraCyc"	"14"	"0.000664734100029017"	"2"	"0.0875450070953048"
"fructose degradation (anaerobic)"	"AraCyc"	"14"	"0.000664734100029017"	"3"	"0.0379155030220382"
"sorbitol fermentation"	"AraCyc"	"14"	"0.00129050076608651"	"3"	"0.0438488216389086"
"energy"	"FunCat"	"14"	"1.38655134889913e-26"	"3"	"0"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"14"	"0"	"3"	"0"
"intracellular signalling"	"FunCat"	"13"	"2.78224805408706e-07"	"3"	"0.0102204314887219"
"flavonoid biosynthesis"	"AraCyc"	"12"	"2.55630016598088e-06"	"2"	"0.0165681422006390"
"Alanine and aspartate metabolism"	"KEGG"	"12"	"0.000236799681879408"	"2"	"0.0308764527568589"
"beta-Alanine metabolism"	"KEGG"	"12"	"2.96816106783003e-06"	"2"	"0.00933611750090677"
"Butanoate metabolism"	"KEGG"	"12"	"2.67574905347251e-05"	"2"	"0.017384856686902"
"Glutamate metabolism"	"KEGG"	"12"	"0.0139323471049589"	"2"	"0.0701391544415446"
"Taurine and hypotaurine metabolism"	"KEGG"	"12"	"9.80430044603696e-14"	"2"	"0.000104410041590718"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"0.030828827958924"	"1"	"0.148492518688811"
"gibberellic acid catabolism"	"TAIR-GO"	"10"	"2.71522211170089e-09"	"1"	"0.00491912433386286"
"lignin biosynthesis"	"TAIR-GO"	"10"	"1.83718069363219e-06"	"1"	"0.0167024804815133"
"methionine biosynthesis"	"TAIR-GO"	"10"	"1.15139297995266e-10"	"1"	"0.00299512907113039"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"3.48391315590780e-08"	"1"	"0.00727130189268096"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"2.89928782611299e-06"	"1"	"0.0341445172761562"
"sulfate assimilation"	"TAIR-GO"	"10"	"1.61228857224846e-07"	"1"	"0.0131817851981707"
"tryptophan catabolism"	"TAIR-GO"	"10"	"4.34756522892449e-14"	"1"	"0.000514097968378301"
"dissimilatory sulfate reduction"	"AraCyc"	"10"	"7.6731089902966e-08"	"1"	"0.00798996266036279"
"glucosinolate biosynthesis from tryptophan"	"AraCyc"	"10"	"1.53162401338043e-11"	"1"	"0.00120347524445839"
"IAA biosynthesis"	"AraCyc"	"10"	"5.06272512326334e-06"	"1"	"0.0235141145089865"
"IAA biosynthesis I"	"AraCyc"	"10"	"1.50096171705109e-07"	"1"	"0.0133409004784387"
"methionine biosynthesis II"	"AraCyc"	"10"	"1.11767082698326e-06"	"1"	"0.0274282299750463"
"sulfate assimilation III"	"AraCyc"	"10"	"0.0117958711754535"	"1"	"0.143558891696127"
"biogenesis of chloroplast"	"FunCat"	"10"	"0.00949592165233165"	"1"	"0.248904342322336"
"nitrogen and sulfur utilization "	"FunCat"	"10"	"5.92976737404785e-09"	"1"	"0.0121725449411808"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"9.49999994479297e-05"	"1"	"0.0281756764065201"
"Methionine metabolism"	"KEGG"	"10"	"0.000195336634623028"	"1"	"0.0723255187244884"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"0.00648614278656148"	"1"	"0.121024262883916"
"Selenoamino acid metabolism"	"KEGG"	"10"	"0.00775858197656813"	"1"	"0.143817470800440"
"Sulfur metabolism"	"KEGG"	"10"	"0.00205720480660792"	"1"	"0.0854701788635795"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"10"	"0.00278878838874506"	"1"	"0.123547932950176"
"Gibberellin metabolism"	"LitPath"	"10"	"0.0404988026372091"	"1"	"0.170288083505470"
"giberelin catabolism"	"LitPath"	"10"	"1.56985159353993e-10"	"1"	"0.0018898171438998"
"arabinose biosynthesis"	"TAIR-GO"	"9"	"0"	"1"	"0"
"cell wall biosynthesis (sensu Magnoliophyta)"	"TAIR-GO"	"9"	"0.000118188748896853"	"1"	"0.0623130534734267"
"mRNA processing"	"TAIR-GO"	"9"	"0"	"1"	"0"
"N-terminal protein myristoylation"	"TAIR-GO"	"9"	"1.16164721043891e-05"	"1"	"0.0247853606656347"
"RNA processing"	"TAIR-GO"	"9"	"0"	"1"	"0"
"IAA conjugate biosynthesis II"	"AraCyc"	"9"	"0"	"1"	"0"
"Galactose metabolism"	"KEGG"	"9"	"0.0103184619450459"	"1"	"0.151606506527583"
"Leaf Glycerolipid Biosynthesis in cytosol / ER"	"BioPath"	"8"	"0.0199996869255740"	"2"	"0.0230718709887052"
"trehalose biosynthesis III"	"AraCyc"	"8"	"0.00368762254763129"	"2"	"0.026137652138174"
"triacylglycerol degradation"	"AraCyc"	"8"	"0.00146632922250976"	"4"	"0.00406155212269985"
"biogenesis of cell wall"	"FunCat"	"8"	"0.00841122617575995"	"2"	"0.0780796550015237"
"defense response"	"TAIR-GO"	"7"	"0.0209557748095957"	"1"	"0.0751930119423541"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"response to auxin stimulus"	"TAIR-GO"	"7"	"3.98385094909253e-05"	"1"	"0.0167024804815133"
"salicylic acid biosynthesis"	"TAIR-GO"	"7"	"7.36435622771392e-10"	"1"	"0.000514097968378301"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"