"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Glucosinolate Metabolism" "LitPath" "330" "33" "" "" "Branched-chain amino acids from aspartate" "BioPath" "216" "34" "" "" "leucine biosynthesis" "AraCyc" "196" "30" "" "" "glucosinolate biosynthesis" "TAIR-GO" "170" "17" "" "" "leucine biosynthesis" "TAIR-GO" "166" "25" "" "" "Valine, leucine and isoleucine biosynthesis" "KEGG" "162" "23" "" "" "glucosinolate biosynthesis from homomethionine" "AraCyc" "130" "13" "" "" "gamma-Hexachlorocyclohexane degradation" "KEGG" "58" "7" "" "" "response to UV" "TAIR-GO" "50" "5" "" "" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "50" "5" "" "" "cellulose biosynthesis" "TAIR-GO" "49" "8" "" "" "homomethionine biosynthesis" "AraCyc" "40" "4" "" "" "ORGAN DATA SET" "quantDE" "7.17491" "maxDE" "7.9036427" "ORGAN DATA SET" "Photosystems " "BioPath" "385" "7.2505543687448e-131" "57" "4.89585224885743e-24" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "185" "1.73511918297494e-15" "22" "0.00068298574764775" "additional photosystem II components" "BioPath" "158" "3.67481328821176e-55" "22" "5.63087331926035e-11" "C-compound and carbohydrate metabolism" "FunCat" "154" "0.000468085061839286" "27" "0.0444088115118209" "photosynthesis" "FunCat" "154" "2.49806928707980e-89" "24" "1.66536021745487e-17" "biogenesis of chloroplast" "FunCat" "149" "4.23671108429071e-55" "22" "2.38019472427463e-11" "Photosynthesis" "KEGG" "149" "1.20652633567834e-132" "26" "1.763913547765e-28" "Photosystem I" "BioPath" "141" "5.03538918453236e-26" "23" "1.4718680816744e-07" "Chlorophyll a/b binding proteins" "BioPath" "138" "7.46219591531542e-92" "17" "5.11302228865519e-15" "Glucosinolate Metabolism" "LitPath" "130" "3.46343606659874e-90" "13" "1.93089925824595e-12" "glycolysis and gluconeogenesis" "FunCat" "119" "2.14093565070718e-15" "19" "0.000466283852769108" "Carbon fixation" "KEGG" "110" "1.61954889708736e-38" "16" "1.28378770384606e-07" "Chlorophyll biosynthesis and breakdown" "BioPath" "101" "1.95560375341441e-17" "12" "0.0002644667085494" "chlorophyll and phytochromobilin metabolism" "LitPath" "95" "2.00832304356123e-29" "11" "4.31283308006116e-06" "Porphyrin and chlorophyll metabolism" "KEGG" "91" "1.49988443229539e-48" "11" "1.24678569927900e-08" "transport " "FunCat" "84" "0" "14" "0" "chlorophyll biosynthesis" "AraCyc" "80" "6.26737718768924e-17" "11" "0.00359037115495785" "photosystem I" "TAIR-GO" "77" "0" "9" "0" "Calvin cycle" "AraCyc" "76" "5.42063655875661e-27" "12" "3.44723266969323e-05" "Photosystem II" "BioPath" "73" "2.66987597511909e-06" "10" "0.0150462469800121" "chlorophyll binding" "TAIR-GO" "70" "1.67507791300659e-40" "8" "1.05628146722059e-06" "chlorophyll biosynthesis" "TAIR-GO" "65" "1.61641218010336e-25" "7" "3.39420312851829e-05" "sulfate assimilation III" "AraCyc" "65" "1.5509843635949e-12" "7" "0.0121638462047969" "acetate fermentation" "AraCyc" "62" "1.69851056204628e-07" "11" "0.0303049070751446" "fructose degradation (anaerobic)" "AraCyc" "60" "9.89339863163758e-08" "10" "0.0398686942787367" "glycolysis IV" "AraCyc" "60" "1.31429471225824e-07" "10" "0.0440952931930894" "sorbitol fermentation" "AraCyc" "60" "1.09485318952201e-06" "10" "0.0534503001505012" "Selenoamino acid metabolism" "KEGG" "60" "1.53771457493863e-20" "6" "0.00156108407805373" "Sulfur metabolism" "KEGG" "60" "4.54817609401529e-25" "6" "0.000197493893168846" "Glycolysis / Gluconeogenesis" "KEGG" "58" "3.359284868522e-06" "9" "0.0154139689960053" "Biosynthesis of steroids" "KEGG" "54" "6.82564129115032e-07" "6" "0.0181582117399486" "Pentose phosphate pathway" "KEGG" "54" "5.99179478738205e-17" "8" "0.000546894063713732" "gluconeogenesis" "AraCyc" "52" "3.59145078140151e-07" "8" "0.0276495194082429" "photorespiration" "AraCyc" "52" "7.5841242634277e-18" "11" "4.8720339244355e-05" "photosystem II" "TAIR-GO" "51" "0" "6" "0" "glucosinolate biosynthesis" "TAIR-GO" "50" "2.94693211110253e-27" "5" "4.06433841943988e-05" "chlorophyll biosynthesis" "LitPath" "49" "9.63138555406613e-27" "5" "2.07943336990088e-05" "light harvesting complex" "BioPath" "48" "0" "6" "0" "Branched-chain amino acids from aspartate" "BioPath" "46" "1.38731577508427e-05" "7" "0.017028787853127" "transport facilitation" "FunCat" "46" "0" "8" "0" "photosynthesis" "TAIR-GO" "44" "3.10524213373157e-10" "6" "0.00412578691232196" "energy" "FunCat" "44" "0" "6" "0" "respiration" "FunCat" "44" "1.37909936261201e-18" "6" "5.55281217156926e-05" "glucosinolate biosynthesis from homomethionine" "AraCyc" "40" "2.69486416028686e-30" "4" "8.79680882340082e-06" "leucine biosynthesis" "AraCyc" "40" "1.70506865265065e-22" "6" "0.000427629463423238" "aerobic respiration" "FunCat" "40" "2.34161736689012e-15" "5" "0.000542688762457427" "biosynthesis of proto- and siroheme" "AraCyc" "38" "0.00123658654558175" "6" "0.100209738406986" "Fructose and mannose metabolism" "KEGG" "38" "6.75963205552171e-05" "6" "0.0181582117399486" "Lipid signaling" "AcylLipid" "37" "6.42178925025813e-06" "8" "0.0521739909815879" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "36" "0" "4" "0" "cysteine biosynthesis I" "AraCyc" "36" "0.000562411983577874" "8" "0.0111566377578133" "glycine biosynthesis I" "AraCyc" "36" "2.48882830594834e-06" "8" "0.0209366776702024" "superpathway of serine and glycine biosynthesis II" "AraCyc" "36" "3.59718767400285e-15" "8" "0.000117825857280921" "Purine metabolism" "KEGG" "36" "0.00703516824371523" "5" "0.147002878469667" "Valine, leucine and isoleucine biosynthesis" "KEGG" "36" "1.09476075108746e-08" "5" "0.00895499401373587" "secondary metabolism" "FunCat" "35" "0.0101326590840298" "6" "0.175337350849965" "Transcription (chloroplast)" "BioPath" "34" "2.06006503625634e-13" "4" "0.000872034328889226" "photorespiration" "TAIR-GO" "34" "0" "5" "0" "transcription initiation" "TAIR-GO" "34" "7.6404043588572e-16" "4" "0.000683168000042561" "photosystem I reaction center" "BioPath" "32" "1.27547497505523e-17" "7" "1.10914030715982e-06" "glyceraldehyde 3-phosphate degradation" "AraCyc" "32" "7.7355273041114e-08" "5" "0.0202384286810847" "glycerol degradation II" "AraCyc" "32" "0.0232613984234545" "5" "0.275021804324110" "pentose-phosphate pathway " "FunCat" "32" "9.45815640085945e-09" "4" "0.0190217194971112" "Glycine, serine and threonine metabolism" "KEGG" "31" "7.65690757463181e-05" "6" "0.00470760334045273" "pentose-phosphate shunt" "TAIR-GO" "30" "7.62897787915459e-10" "4" "0.0066367929322478" "nitrogen and sulfur metabolism" "FunCat" "30" "7.50950322840705e-05" "3" "0.0624577178076538" "Cysteine metabolism" "KEGG" "30" "8.78999664914985e-06" "3" "0.0742956596931057" "Oxygen-evolving enhancer protein" "BioPath" "28" "1.85496925835346e-18" "4" "5.30595665588209e-05" "mannitol degradation" "AraCyc" "28" "9.61185692419206e-07" "5" "0.0300567809216085" "sorbitol degradation" "AraCyc" "28" "2.39614247037477e-06" "5" "0.0359618751658158" "Nitrogen metabolism" "KEGG" "28" "0.0219952434403237" "5" "0.010484006682627" "Carotenoid biosynthesis" "BioPath" "26" "0.00193015607132683" "3" "0.0559645087215441" "photosystem I subunit precursor" "BioPath" "26" "0" "5" "0" "porphyrin biosynthesis" "TAIR-GO" "26" "6.44673267978689e-06" "4" "0.0098249654926361" "response to jasmonic acid stimulus" "TAIR-GO" "26" "2.72081003207534e-11" "3" "0.00395208704445699" "carotenoid biosynthesis" "AraCyc" "26" "3.33779924590892e-06" "3" "0.0117769242151955" "dissimilatory sulfate reduction" "AraCyc" "26" "2.20793533179625e-10" "3" "0.00249258168185582" "serine biosynthesis" "AraCyc" "26" "1.55198360934825e-18" "8" "0" "carotenid biosynthesis" "LitPath" "26" "7.18441326831396e-07" "3" "0.0100633283356627" "Carotenoid and abscisic acid metabolism" "LitPath" "26" "0.0054090086182697" "3" "0.0956668746085621" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "26" "4.45951272363809e-07" "4" "0.00421487669758661" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "26" "0.00591723113426269" "3" "0.0825516467594694" "MEP (methylerythritol P) pathway, plastids" "LitPath" "26" "1.70749440483281e-10" "3" "0.00437996312064543" "lactose degradation IV" "AraCyc" "25" "1.23331703293502e-22" "6" "8.22189266096255e-08" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "24" "0.0181064579053933" "3" "0.0967624342089703" "photosystem II type II chlorophyll a /b binding protein" "BioPath" "24" "2.2773237107026e-14" "3" "0.000381798185455863" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "24" "0.00183638406949385" "4" "0.0412240145686330" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "24" "0.00556002531952111" "3" "0.072677952704252" "electron transport and membrane-associated energy conservation " "FunCat" "24" "3.12863724183849e-14" "3" "0.00317349996727074" "nitrogen and sulfur utilization " "FunCat" "24" "1.10156928608583e-07" "3" "0.00734677573873465" "Glyoxylate and dicarboxylate metabolism" "KEGG" "24" "0.000743381832875719" "4" "0.0233048764205316" "Miscellaneous acyl lipid metabolism" "AcylLipid" "24" "0.0370033551789655" "7" "0.175148893815217" "jasmonic acid biosynthesis" "TAIR-GO" "23" "0.043305404360815" "3" "0.151842816885800" "alanine biosynthesis II" "AraCyc" "23" "0.00231306820284870" "3" "0.224535405968847" "jasmonic acid biosynthesis" "AraCyc" "23" "0.00644609560350878" "3" "0.092008804047803" "lipoxygenase pathway" "AraCyc" "23" "7.58372130479845e-06" "3" "0.023708129057619" "photosynthetic electron transport" "TAIR-GO" "22" "8.5432135335463e-11" "3" "0.00185466022770297" "transported compounds (substrates)" "FunCat" "22" "0" "5" "0" "ATP synthesis" "KEGG" "22" "0.0303219122567915" "4" "0.0878066084217452" "galactose degradation I" "AraCyc" "21" "4.43834885316719e-16" "5" "5.46681117475274e-06" "ATP synthase components" "BioPath" "20" "0.0033286284451117" "3" "0.0399107666098946" "Cytochrome b6/f complex" "BioPath" "20" "8.73169301167663e-05" "2" "0.120370903903349" "Plastocyanin" "BioPath" "20" "0" "2" "0" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "20" "0.000118271868248403" "2" "0.0394731883651834" "Thylakoid biogenesis and photosystem assembly" "BioPath" "20" "0.0022541261015656" "2" "0.0620276732870827" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "cysteine biosynthesis" "TAIR-GO" "20" "3.35597602593090e-13" "2" "0.00135292300730261" "cytochrome b6f complex" "TAIR-GO" "20" "2.87847831012029e-09" "2" "0.0209461219969477" "photosynthetic water oxidation" "TAIR-GO" "20" "0" "2" "0" "positive regulation of transcription" "TAIR-GO" "20" "1.13903636049410e-13" "2" "0.00135292300730261" "regulation of transcription" "TAIR-GO" "20" "0" "2" "0" "response to UV" "TAIR-GO" "20" "0.0179808934425292" "2" "0.167929817333118" "sulfate assimilation" "TAIR-GO" "20" "4.15598670287906e-05" "2" "0.0495740334847823" "ammonia assimilation cycle" "AraCyc" "20" "2.76464911647492e-05" "2" "0.0500283714500195" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "20" "2.98378792752478e-10" "2" "0.00345772796283394" "glutamine biosynthesis I" "AraCyc" "20" "3.30772000959748e-06" "2" "0.0241646469261290" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "20" "2.87989894803314e-09" "2" "0.0148766189642976" "nitrate assimilation pathway" "AraCyc" "20" "0.000663572637063023" "2" "0.0664218488363727" "oxidative branch of the pentose phosphate pathway" "AraCyc" "20" "2.34736263109927e-07" "4" "0.00581119089581271" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "20" "0" "3" "0" "homocysteine and cysteine interconversion" "AraCyc" "19" "5.55664865234863e-06" "2" "0.0664218488363727" "methionine biosynthesis II" "AraCyc" "19" "0.000640127571520504" "2" "0.127418118137530" "Ferredoxin" "BioPath" "18" "2.52653583284303e-05" "4" "0.00410235449181163" "cellulose biosynthesis" "TAIR-GO" "18" "8.37521850526126e-05" "3" "0.0260141283382216" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "photosynthesis light harvesting" "TAIR-GO" "18" "3.84415970301293e-05" "2" "0.0495740334847823" "photosynthesis light harvesting in photosystem I" "TAIR-GO" "18" "1.58136086953698e-06" "2" "0.0336916482113157" "primary cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "18" "1.10157318111047e-13" "3" "0.000148407370699011" "protein biosynthesis" "TAIR-GO" "18" "0" "3" "0" "glycine degradation I" "AraCyc" "18" "1.87799560439016e-09" "4" "0.000792746903686046" "biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "18" "0.00521168564310229" "2" "0.103112691940385" "Membrane Transport" "KEGG" "18" "4.43361829204349e-05" "2" "0.141190319368514" "Other ion-coupled transporters" "KEGG" "18" "4.60613855529748e-08" "2" "0.0311334251541924" "calmodulin binding" "TAIR-GO" "17" "0.00371223169445257" "2" "0.167929817333118" "photosystem II assembly" "TAIR-GO" "17" "3.61597432875696e-14" "2" "0.00135292300730261" "photosystem II stabilization" "TAIR-GO" "17" "0" "2" "0" "starch degradation" "AraCyc" "17" "0.00698180880140769" "3" "0.0517226603573704" "Early light-inducible proteins" "BioPath" "16" "0.00183581517654528" "2" "0.0620276732870827" "carotenoid biosynthesis" "TAIR-GO" "16" "0.00300911241204144" "2" "0.0495740334847823" "magnesium chelatase complex" "TAIR-GO" "16" "0" "2" "0" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "response to high light intensity" "TAIR-GO" "16" "3.34446927809128e-10" "2" "0.00135292300730261" "cysteine biosynthesis II" "AraCyc" "16" "0.00935735592546333" "6" "0.00500071761904473" "lysine biosynthesis I" "AraCyc" "16" "0.01059697555506" "5" "0.00410967838321379" "C-compound and carbohydrate utilization " "FunCat" "16" "0" "3" "0" "nucleotide metabolism" "FunCat" "16" "0" "3" "0" "photosystem II antenna complex" "TAIR-GO" "14" "1.82016537766839e-10" "2" "0.00135292300730261" "cyanate degradation" "AraCyc" "14" "1.88578552948428e-06" "3" "0.0316623237961996" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "3.35077469393896e-13" "2" "0.000451660375742414" "biosynthesis of glycosides" "FunCat" "14" "3.35077469393896e-13" "2" "0.000451660375742414" "metabolismn of primary metabolic sugars derivatives " "FunCat" "14" "3.35077469393896e-13" "2" "0.000451660375742414" "gamma-Hexachlorocyclohexane degradation" "KEGG" "14" "0.0440936737932615" "2" "0.0773062751093732" "phosphate transport" "TAIR-GO" "13" "3.99596892411814e-07" "2" "0.00496646991711342" "glutamate degradation I" "AraCyc" "13" "0.000800235013060462" "2" "0.0359021417704182" "psbP family of thylakoid proteins" "BioPath" "12" "2.54756698685243e-05" "4" "0.000281574511315359" "glycine decarboxylation via glycine cleavage system" "TAIR-GO" "12" "0" "2" "0" "thiamine biosynthesis" "AraCyc" "12" "1.17119271380993e-05" "2" "0.0148766189642976" "accessory proteins of photosynthetic electron transport " "FunCat" "12" "0" "2" "0" "electron / hydrogen transport " "FunCat" "12" "1.14646319398457e-05" "2" "0.0075777456290417" "transcription" "FunCat" "11" "0.00539058938564541" "2" "0.0872487980041847" "transcriptional control" "FunCat" "11" "0.0416868164666586" "2" "0.0590387320142174" "chlorophyll A apoprotein" "BioPath" "10" "2.36876462973610e-05" "1" "0.0534100510180569" "FtsH protease (many homologues / subcellular localization ambiguous)" "BioPath" "10" "0" "1" "0" "Other cell wall metabolism related enzymes" "BioPath" "10" "9.06167945394007e-05" "1" "0.0196306012757075" "Regulatory enzymes" "BioPath" "10" "0.00599209207364776" "1" "0.0534100510180569" "amino acid biosynthesis" "TAIR-GO" "10" "0.00305007842194139" "2" "0.0495740334847823" "aspartate family amino acid biosynthesis" "TAIR-GO" "10" "2.44907876025119e-08" "2" "0.00135292300730261" "ATP synthesis coupled proton transport" "TAIR-GO" "10" "0.0108716196350184" "1" "0.0979306738534854" "carotene biosynthesis" "TAIR-GO" "10" "0.000276928796210676" "1" "0.0341425153370674" "cell communication" "TAIR-GO" "10" "0" "1" "0" "chlorophyll catabolism" "TAIR-GO" "10" "0.000557521071646331" "1" "0.0341425153370674" "chloroplast ATP synthase complex" "TAIR-GO" "10" "5.55095809109778e-06" "1" "0.0122827871172242" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "0.00386570314217524" "1" "0.0633185607570213" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "0.000557521071646331" "1" "0.0341425153370674" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "glucose metabolism" "TAIR-GO" "10" "0.0108716196350184" "1" "0.0979306738534854" "glucosinolate catabolism" "TAIR-GO" "10" "2.81133538063407e-06" "1" "0.0122827871172242" "indoleacetic acid biosynthesis" "TAIR-GO" "10" "0.0108716196350184" "1" "0.0979306738534854" "isoprenoid biosynthesis" "TAIR-GO" "10" "0.038058509186535" "1" "0.0979306738534854" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "methionine biosynthesis" "TAIR-GO" "10" "0.00305007842194139" "1" "0.0633185607570213" "pentose-phosphate shunt, oxidative branch" "TAIR-GO" "10" "0.0108716196350184" "1" "0.0979306738534854" "photosynthesis light harvesting in photosystem II" "TAIR-GO" "10" "0.00305007842194139" "1" "0.0979306738534854" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "2.44907876025119e-08" "1" "0.0122827871172242" "photosystem I reaction center" "TAIR-GO" "10" "5.55095809109778e-06" "1" "0.0341425153370674" "plastid organization and biogenesis" "TAIR-GO" "10" "0.000125966357214359" "1" "0.0633185607570213" "protein binding" "TAIR-GO" "10" "0.00139214048497478" "1" "0.0979306738534854" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "proton transport" "TAIR-GO" "10" "0.0108716196350184" "1" "0.0979306738534854" "response to chemical substance" "TAIR-GO" "10" "0" "1" "0" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to stress" "TAIR-GO" "10" "0.00601375249473684" "1" "0.0633185607570213" "response to toxin" "TAIR-GO" "10" "0" "1" "0" "sulfate reduction" "TAIR-GO" "10" "5.55095809109778e-06" "1" "0.0122827871172242" "sulfate reduction, APS pathway" "TAIR-GO" "10" "0" "1" "0" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "tryptophan catabolism" "TAIR-GO" "10" "5.55095809109778e-06" "1" "0.0122827871172242" "xenobiotic catabolism" "TAIR-GO" "10" "0" "1" "0" "glucosinolate biosynthesis from tryptophan" "AraCyc" "10" "0.000330977388600086" "1" "0.0268345237353569" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "homoserine biosynthesis" "AraCyc" "10" "0.00188712003717445" "2" "0.0241646469261290" "peptidoglycan biosynthesis" "AraCyc" "10" "0.00146166462745641" "1" "0.180614289002324" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "10" "2.93036009980195e-05" "1" "0.0783408305903844" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "tyrosine degradation" "AraCyc" "10" "0.0193683307958156" "1" "0.255800226741063" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "0.0166218632236156" "1" "0.144436252194347" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "Novobiocin biosynthesis" "KEGG" "10" "0.0414587562805467" "1" "0.180539105636440" "Peptidoglycan biosynthesis" "KEGG" "10" "0.00030393084944735" "1" "0.0316256504753201" "chlorophyll catabolism" "LitPath" "10" "0.000141457009199837" "1" "0.0203558708666855" "oxylipin pathway" "LitPath" "10" "1.17233873938994e-06" "1" "0.00718130514681924" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "calcium ion transport" "TAIR-GO" "9" "1.33954526689962e-05" "1" "0.0122827871172242" "carbohydrate biosynthesis" "TAIR-GO" "9" "0" "1" "0" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "myo-inositol biosynthesis" "TAIR-GO" "9" "0" "1" "0" "nitrogen compound metabolism" "TAIR-GO" "9" "0.000442367848106726" "1" "0.0341425153370674" "response to microbial phytotoxin" "TAIR-GO" "9" "0" "1" "0" "sucrose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "1.47591084847336e-05" "1" "0.0268345237353569" "Taurine and hypotaurine metabolism" "KEGG" "9" "0.000114844597154002" "1" "0.0316256504753201" "photosynthetic electron transport in photosystem I" "TAIR-GO" "8" "0.00205358194923953" "1" "0.0341425153370674" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "ribose degradation" "AraCyc" "8" "0.0268572203609753" "2" "0.105320627135684" "C-compound and carbohydrate transport " "FunCat" "8" "9.00289442621648e-07" "2" "0.00170348360796392" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "One carbon pool by folate" "KEGG" "8" "0.0483133302246497" "2" "0.0471704909487715" "photomorphogenesis" "TAIR-GO" "7" "0.000725952784491077" "1" "0.0341425153370674" "response to pest, pathogen or parasite" "TAIR-GO" "7" "4.18422769037698e-07" "1" "0.0122827871172242" "response to water deprivation" "TAIR-GO" "7" "0" "1" "0" "stress response" "FunCat" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "3.2393" "maxDE" "10.18158" "STRESS DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "80" "3.85143251133549e-31" "12" "2.35722112888187e-06" "Glucosinolate Metabolism" "LitPath" "60" "4.71362545271741e-71" "6" "4.505935101152e-10" "Branched-chain amino acids from aspartate" "BioPath" "58" "3.29146239674973e-63" "9" "2.36985754197630e-12" "leucine biosynthesis" "AraCyc" "42" "4.70884519091941e-52" "7" "1.67168722923519e-10" "Valine, leucine and isoleucine biosynthesis" "KEGG" "42" "1.03154327838772e-34" "6" "1.34872771781009e-07" "glucosinolate biosynthesis" "TAIR-GO" "40" "3.06494238525929e-59" "4" "9.61237996237085e-09" "glucosinolate biosynthesis from homomethionine" "AraCyc" "30" "9.33432986974287e-37" "3" "6.64342648582462e-07" "amino acid metabolism" "FunCat" "30" "1.08416232854228e-15" "4" "0.000922098595168604" "Pyruvate metabolism" "KEGG" "30" "3.72012881903814e-10" "3" "0.0169570775419871" "TCA cycle -- aerobic respiration" "AraCyc" "24" "1.14805817963639e-09" "4" "0.00201916357923047" "TCA cycle variation VII" "AraCyc" "24" "6.37657028461296e-06" "4" "0.0112459276463646" "TCA cycle variation VIII" "AraCyc" "24" "6.85245878452979e-09" "4" "0.00243494260548147" "TCA cycle variation IV" "AraCyc" "22" "1.70201534778204e-08" "3" "0.0109468126397606" "C-compound and carbohydrate metabolism" "FunCat" "22" "0.000151685992064662" "3" "0.138644675669264" "Glycan Biosynthesis and Metabolism" "KEGG" "18" "1.68864968086139e-05" "2" "0.0558948268161197" "aspartate degradation I" "AraCyc" "16" "1.44458509553719e-06" "2" "0.0134960470682989" "aspartate degradation II" "AraCyc" "16" "8.59549595392153e-10" "2" "0.00334370186579934" "Carbon fixation" "KEGG" "16" "0.00113515532816079" "2" "0.0603158598335716" "Cysteine metabolism" "KEGG" "16" "8.38500293328925e-08" "2" "0.00583238438303318" "Glutamate metabolism" "KEGG" "16" "7.92413525604241e-05" "2" "0.0210605761818342" "cellulose biosynthesis" "BioPath" "14" "5.13267748284493e-05" "2" "0.0417209388065815" "Glycine, serine and threonine metabolism" "KEGG" "14" "1.53381850083254e-05" "2" "0.0130413417969278" "acetyl-CoA assimilation" "AraCyc" "12" "0.000792890601573995" "2" "0.02368536131326" "glyoxylate cycle" "AraCyc" "12" "0.000103138996222880" "2" "0.00958605727054906" "serine-isocitrate lyase pathway" "AraCyc" "12" "0.00902543415702777" "2" "0.0566424056561618" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "12" "0.000278815540587353" "2" "0.0408334970335425" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "12" "0.0260658906924891" "2" "0.157014013055194" "Flavonoid and anthocyanin metabolism" "BioPath" "10" "0.00105199871973568" "1" "0.246904311195233" "Glutamate/glutamine from nitrogen fixation" "BioPath" "10" "4.82853627399705e-06" "1" "0.0203333702749045" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "10" "0.000660821840358678" "2" "0.014292818754881" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "10" "0.000752937806254968" "1" "0.0942434881318037" "starch metabolism" "BioPath" "10" "0.000459892097869027" "1" "0.0942434881318037" "ADPG pyrophosphorylase complex (sensu Eukaryota)" "TAIR-GO" "10" "0" "1" "0" "aging" "TAIR-GO" "10" "9.19745742853083e-11" "1" "0.00383657134631592" "amino acid biosynthesis" "TAIR-GO" "10" "2.05736488753235e-13" "2" "8.64844052420782e-05" "aspartate family amino acid biosynthesis" "TAIR-GO" "10" "1.55848545027264e-19" "2" "1.60792157371422e-06" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "methionine biosynthesis" "TAIR-GO" "10" "2.05736488753235e-13" "1" "0.000847134003163795" "response to UV" "TAIR-GO" "10" "4.67783844319729e-08" "1" "0.0102956253845299" "starch biosynthesis" "TAIR-GO" "10" "2.71231030970831e-10" "1" "0.00289904961104746" "ammonia assimilation cycle" "AraCyc" "10" "2.090146515856e-06" "1" "0.0124086425727844" "cellulose biosynthesis" "AraCyc" "10" "0.0274076730900625" "2" "0.0535960327884017" "formaldehyde assimilation I (serine pathway)" "AraCyc" "10" "0.00294796854100907" "1" "0.135063958097347" "gluconeogenesis" "AraCyc" "10" "0.0384606563634672" "1" "0.219107857081366" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "4.56835645821302e-09" "1" "0.00220372367746773" "glutamine biosynthesis I" "AraCyc" "10" "5.9402254435368e-07" "1" "0.00742421575094063" "homocysteine and cysteine interconversion" "AraCyc" "10" "3.51339441487881e-07" "1" "0.0153158704882633" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "homoserine biosynthesis" "AraCyc" "10" "1.30645487429205e-09" "2" "0.000237278841970451" "lysine biosynthesis I" "AraCyc" "10" "9.0154858375812e-06" "2" "0.00400354788663965" "methionine biosynthesis II" "AraCyc" "10" "7.97851438674702e-06" "1" "0.0255620065554315" "mixed acid fermentation" "AraCyc" "10" "0.00431551991454753" "1" "0.148543237296001" "nitrate assimilation pathway" "AraCyc" "10" "1.61546772012093e-05" "1" "0.0153158704882633" "phenylalanine degradation I" "AraCyc" "10" "0.00104778580915659" "1" "0.0966344010458617" "serine biosynthesis" "AraCyc" "10" "1.30645487429205e-09" "2" "0.000237278841970451" "starch biosynthesis" "AraCyc" "10" "0" "1" "0" "sulfate assimilation III" "AraCyc" "10" "0.043868679094924" "1" "0.135063958097347" "TCA cycle variation II" "AraCyc" "10" "1.28616783594539e-05" "1" "0.0423886431182775" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "10" "4.11572953505214e-08" "1" "0.0109212516715230" "nitrogen and sulfur metabolism" "FunCat" "10" "5.38206687009156e-08" "1" "0.00992758694446512" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.000653070391180558" "1" "0.0462254318507497" "Citrate cycle (TCA cycle)" "KEGG" "10" "0.00634140319070967" "1" "0.109962796235775" "Fluorene degradation" "KEGG" "10" "7.9303712586384e-06" "1" "0.0176669703824716" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "3.17901314035735e-05" "1" "0.0224821850051142" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "0.000479452558867055" "1" "0.0567365466133609" "Methionine metabolism" "KEGG" "10" "7.2309061767384e-05" "1" "0.0305894705953620" "Nitrogen metabolism" "KEGG" "10" "0.0142037977291955" "1" "0.0718990051105449" "Pantothenate and CoA biosynthesis" "KEGG" "10" "7.20581781666539e-06" "2" "0.00243432060900011" "Peptidoglycan biosynthesis" "KEGG" "10" "5.7342632168058e-10" "1" "0.00183892207098282" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "2.70882348103209e-05" "1" "0.0305894705953620" "Selenoamino acid metabolism" "KEGG" "10" "0.00338148253776134" "1" "0.0641634227765419" "Sulfur metabolism" "KEGG" "10" "0.0008351039379071" "1" "0.0365422523247389" "Valine, leucine and isoleucine degradation" "KEGG" "10" "0.00172061165666330" "2" "0.0120714019442174" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "10" "8.23904907771881e-09" "2" "0.00326604178641735" "hemicellulose biosynthesis" "BioPath" "8" "0.000195709870789855" "1" "0.0302687131583632" "histidine biosynthesis" "AraCyc" "8" "0.000372502588300382" "2" "0.00334370186579934" "histidine biosynthesis I" "AraCyc" "8" "0.000156694606468715" "2" "0.00275523911034785" "C-compound and carbohydrate utilization " "FunCat" "8" "2.14444290493572e-16" "2" "0" "Glycerolipid metabolism" "KEGG" "8" "0.0298269466894541" "1" "0.075875669707266" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "9.04506155967195e-07" "1" "0.00383657134631592" "secondary metabolism" "FunCat" "7" "0.00099561767306944" "1" "0.0767719360459191" "triterpene biosynthesis" "LitPath" "7" "2.71569157987791e-05" "1" "0.00825784140692201" "HORMONE DATA SET" "quantDE" "1.601989" "maxDE" "5.4927015" "HORMONE DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "82" "2.72720403637537e-26" "13" "2.31678454470743e-06" "Glucosinolate Metabolism" "LitPath" "70" "4.61955471219147e-82" "7" "3.28107649311707e-11" "Branched-chain amino acids from aspartate" "BioPath" "64" "3.19842646137511e-67" "10" "2.46948922275951e-13" "leucine biosynthesis" "AraCyc" "42" "8.69913936264727e-50" "7" "2.75601490534938e-09" "Valine, leucine and isoleucine biosynthesis" "KEGG" "42" "1.77326295975654e-33" "6" "1.47639323295777e-06" "glucosinolate biosynthesis" "TAIR-GO" "40" "7.34604321923893e-53" "4" "2.21120190199335e-08" "Pyruvate metabolism" "KEGG" "32" "1.09567741635028e-10" "5" "0.00255139705116034" "glucosinolate biosynthesis from homomethionine" "AraCyc" "30" "3.81202123868008e-35" "3" "2.67128530547998e-06" "amino acid metabolism" "FunCat" "30" "3.50479577966847e-11" "5" "0.00113896357986646" "Glycine, serine and threonine metabolism" "KEGG" "26" "3.36131202429047e-14" "4" "0.000583554209080086" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "26" "1.20205447291074e-08" "5" "0.0120855966817891" "Flavonoid and anthocyanin metabolism" "BioPath" "20" "3.0498173166323e-09" "2" "0.095621756107972" "formylTHF biosynthesis" "AraCyc" "20" "5.78355998446074e-14" "3" "0.00123814636839739" "photorespiration" "AraCyc" "20" "1.93213953309106e-10" "3" "0.0133806037843588" "Ascorbate and aldarate metabolism" "KEGG" "20" "1.05419525734841e-10" "2" "0.0120779369518750" "Fluorene degradation" "KEGG" "20" "5.66553346377046e-15" "2" "0.00274814343051787" "gamma-Hexachlorocyclohexane degradation" "KEGG" "20" "1.20562324160463e-13" "2" "0.00399341392245499" "development" "TAIR-GO" "19" "7.2149199711084e-09" "2" "0.0135492152217646" "Glutathione metabolism" "BioPath" "18" "0.00214012057461866" "3" "0.0472441931527169" "TCA cycle -- aerobic respiration" "AraCyc" "18" "3.84098100995284e-05" "4" "0.00884418804995721" "TCA cycle variation VII" "AraCyc" "18" "0.0082026927075463" "4" "0.0425010622634503" "TCA cycle variation VIII" "AraCyc" "18" "0.000122187082428186" "4" "0.0105274188176951" "serine-isocitrate lyase pathway" "AraCyc" "16" "0.00060687077339545" "4" "0.00735716394124793" "TCA cycle variation IV" "AraCyc" "16" "0.000280934968167855" "3" "0.0341635039207936" "Glutamate metabolism" "KEGG" "16" "0.000176305462721613" "2" "0.0505306322026238" "formaldehyde assimilation I (serine pathway)" "AraCyc" "14" "6.68351206756066e-05" "3" "0.0120570003311331" "Miscellaneous acyl lipid metabolism" "AcylLipid" "14" "0.0342516241525190" "7" "0.00418249563857931" "Gluconeogenesis from lipids in seeds" "BioPath" "13" "0.045733633545002" "2" "0.153052977206343" "isoleucine degradation I" "AraCyc" "13" "5.52320517424964e-05" "2" "0.0270306975894148" "isoleucine degradation III" "AraCyc" "13" "1.02095221137494e-08" "2" "0.00373301442061500" "leucine degradation I" "AraCyc" "13" "5.52320517424964e-05" "2" "0.0270306975894148" "leucine degradation II" "AraCyc" "13" "1.02095221137494e-08" "2" "0.00373301442061500" "valine degradation I" "AraCyc" "13" "3.96613177298489e-05" "2" "0.0656551589786548" "valine degradation II" "AraCyc" "13" "6.77403341412308e-09" "2" "0.0104380228332352" "ascorbate glutathione cycle" "AraCyc" "12" "4.67102250115169e-06" "2" "0.0087696159417663" "Glutathione metabolism" "KEGG" "12" "0.0024890810776766" "2" "0.0476544480337035" "Methane metabolism" "KEGG" "12" "0.000851025225762345" "4" "0.0200934270678460" "Phenylalanine metabolism" "KEGG" "12" "0.0124262199533243" "4" "0.02648752938233" "detoxification" "FunCat" "11" "0" "2" "0" "detoxification involving cytochrome P450 " "FunCat" "11" "3.11147491036375e-16" "2" "0.000315144639511241" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "10" "0.00306069268321446" "2" "0.0209161067256636" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "10" "1.18542117908547e-05" "1" "0.0265536272527767" "SRP (signal recognition particle)-dependent pathway for integral membrane proteins" "BioPath" "10" "2.94232980996922e-08" "1" "0.00558470608014865" "Thylakoid biogenesis and photosystem assembly" "BioPath" "10" "2.39565443881994e-07" "1" "0.0077188172956391" "Transcriptional regulators (chloroplast)" "BioPath" "10" "6.7216581603879e-14" "1" "0.000392008934845157" "amino acid biosynthesis" "TAIR-GO" "10" "7.15197767683416e-12" "2" "0.000138906732439701" "aspartate family amino acid biosynthesis" "TAIR-GO" "10" "5.93933849553625e-18" "2" "2.60254499777064e-06" "cell plate formation (sensu Magnoliophyta)" "TAIR-GO" "10" "2.51468051734509e-15" "1" "0.000196291951562624" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "1.00330409545427e-11" "1" "0.00115703093657462" "cytokinesis by cell plate formation" "TAIR-GO" "10" "5.93933849553625e-18" "1" "0.000196291951562624" "embryonic development" "TAIR-GO" "10" "1.95233334612470e-05" "1" "0.0288899077966642" "embryonic development (sensu Magnoliophyta)" "TAIR-GO" "10" "4.94721114224653e-07" "1" "0.0160644154982234" "fatty acid metabolism" "TAIR-GO" "10" "0.000217747625120688" "1" "0.0480933070518717" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "positive regulation of transcription" "TAIR-GO" "10" "4.55297310599419e-13" "1" "0.000583670764692331" "regulation of transcription" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "1.2158823607713e-06" "1" "0.0138912681398608" "trichome branching (sensu Magnoliophyta)" "TAIR-GO" "10" "0" "1" "0" "aspartate degradation I" "AraCyc" "10" "0.00927006087053619" "2" "0.0333772022342277" "aspartate degradation II" "AraCyc" "10" "0.000173498428988895" "2" "0.0087696159417663" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "1.55166639728383e-08" "1" "0.00435195603422743" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "homoserine biosynthesis" "AraCyc" "10" "4.4926837175276e-09" "2" "0.000656911071992086" "lysine biosynthesis I" "AraCyc" "10" "2.70064909840639e-05" "2" "0.0104380228332352" "serine biosynthesis" "AraCyc" "10" "4.4926837175276e-09" "2" "0.000656911071992086" "biogenesis of chloroplast" "FunCat" "10" "0.00552730378707864" "1" "0.162696694091128" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "secondary metabolism" "FunCat" "10" "0.000176184459375511" "3" "0.00510519116776439" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "10" "0.0393592573176125" "3" "0.0302481875399279" "Pantothenate and CoA biosynthesis" "KEGG" "10" "1.34531426520622e-05" "2" "0.00641931302462415" "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" "10" "0.0383734782562723" "2" "0.0505306322026238" "Valine, leucine and isoleucine degradation" "KEGG" "10" "0.00288097918692118" "2" "0.0299175420734651" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "10" "0.00719957678764868" "1" "0.410451647349673" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "10" "0.00919018315992992" "2" "0.102090430718128" "fatty acid modulation" "LitPath" "10" "3.7729700085495e-14" "1" "0.000286730877005487" "fatty acid beta oxidation complex" "BioPath" "9" "0.000307969307557092" "1" "0.0701819310515145" "flower development" "TAIR-GO" "9" "1.01743558548105e-09" "1" "0.00191136492483288" "seed germination" "TAIR-GO" "9" "1.09174614986874e-18" "1" "0" "fatty acid oxidation pathway" "AraCyc" "9" "0.00752675871379414" "1" "0.0948985421266573" "oxidation of fatty acids " "FunCat" "9" "3.89863564302037e-19" "1" "0.000137229893038983" "Degradation of storage lipids and straight fatty acids" "AcylLipid" "9" "0.00237285564811485" "1" "0.230204872141694" "phenylalanine degradation I" "AraCyc" "8" "0.0214212232193122" "2" "0.0368158799459936" "MUTANT DATA SET" "quantDE" "2.92591" "maxDE" "10.162114364" "MUTANT DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" "116" "2.28363236963101e-40" "16" "9.71707887079373e-08" "Glucosinolate Metabolism" "LitPath" "70" "1.48538565854509e-74" "7" "8.40591236240728e-11" "amino acid metabolism" "FunCat" "66" "2.25506377488819e-24" "8" "5.10995661497965e-05" "Pyruvate metabolism" "KEGG" "62" "5.53924335442799e-23" "7" "0.000613127848457749" "Branched-chain amino acids from aspartate" "BioPath" "48" "1.14183089991915e-37" "8" "1.75498495675370e-09" "C-compound and carbohydrate metabolism" "FunCat" "46" "0.00101760717007432" "7" "0.0804223625023897" "leucine biosynthesis" "AraCyc" "42" "2.72865477344030e-42" "7" "1.50955636089568e-08" "Valine, leucine and isoleucine biosynthesis" "KEGG" "42" "1.30182649645710e-24" "6" "1.31119502745071e-05" "glucosinolate biosynthesis" "TAIR-GO" "40" "1.13421478491968e-48" "4" "1.11482377056776e-07" "sulfate assimilation III" "AraCyc" "40" "2.14436332362647e-14" "4" "0.00468589976228983" "Cysteine metabolism" "KEGG" "36" "5.95550509164389e-19" "4" "0.000652591117943283" "Oxidative phosphorylation" "KEGG" "31" "7.20057758815369e-09" "5" "0.0131543906359979" "glucosinolate biosynthesis from homomethionine" "AraCyc" "30" "8.33524815504472e-30" "3" "6.27484126932778e-06" "TCA cycle -- aerobic respiration" "AraCyc" "30" "1.41787836895514e-08" "5" "0.00475462693830102" "TCA cycle variation VII" "AraCyc" "30" "0.000171676567851311" "5" "0.0307632492507215" "TCA cycle variation VIII" "AraCyc" "30" "1.06956323320061e-07" "5" "0.00585727233884043" "Selenoamino acid metabolism" "KEGG" "30" "1.13352527869317e-11" "3" "0.00798136092810173" "Sulfur metabolism" "KEGG" "30" "8.93905094616741e-14" "3" "0.00251340067287663" "Glutathione metabolism" "BioPath" "28" "9.93535572046583e-06" "4" "0.0211561607512917" "TCA cycle variation IV" "AraCyc" "28" "1.09451255453170e-07" "4" "0.0174229583417915" "Leaf Glycerolipid Biosynthesis in Plastid" "BioPath" "24" "0.000161724546060644" "3" "0.042504321945816" "serine-isocitrate lyase pathway" "AraCyc" "24" "3.77754151965924e-05" "4" "0.0174229583417915" "transport " "FunCat" "23" "0" "3" "0" "transport facilitation" "FunCat" "23" "0" "3" "0" "aspartate degradation I" "AraCyc" "22" "7.63564927610604e-07" "3" "0.0107460950012873" "aspartate degradation II" "AraCyc" "22" "4.15835438234873e-11" "3" "0.00170323493778106" "formaldehyde assimilation I (serine pathway)" "AraCyc" "22" "3.85641493149825e-07" "3" "0.0244958150417546" "Carbon fixation" "KEGG" "22" "0.00504554043565247" "3" "0.0969632465760099" "Nitrogen metabolism" "KEGG" "22" "3.67972420541201e-05" "3" "0.0100505383713574" "Flavonoid and anthocyanin metabolism" "BioPath" "20" "3.03479404981148e-07" "2" "0.135893362731104" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "20" "1.51743817008976e-07" "2" "0.0315442955652477" "methionine biosynthesis" "TAIR-GO" "20" "5.85548831973647e-27" "2" "2.64481422349973e-05" "cysteine biosynthesis I" "AraCyc" "20" "6.75603909676101e-05" "2" "0.145869030625895" "homocysteine and cysteine interconversion" "AraCyc" "20" "3.00454515573275e-14" "2" "0.00389024601144902" "methionine biosynthesis II" "AraCyc" "20" "2.42107270959933e-11" "2" "0.0086018134783455" "nitrogen and sulfur metabolism" "FunCat" "20" "1.21959887295794e-10" "2" "0.00455363860951447" "Methionine metabolism" "KEGG" "20" "6.86546996731768e-09" "2" "0.0155665331966341" "Synthesis of fatty acids in plastids" "AcylLipid" "20" "2.19069428322825e-10" "3" "0.00303743003555178" "Methane metabolism" "KEGG" "19" "8.69701017787236e-05" "4" "0.0661608772091568" "acetyl-CoA assimilation" "AraCyc" "18" "0.000282898854984342" "3" "0.0220946131896982" "glyoxylate cycle" "AraCyc" "18" "1.63607806566889e-05" "3" "0.00688723701732077" "phenylalanine degradation I" "AraCyc" "18" "9.71023260040725e-06" "3" "0.0122884365351878" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "18" "0.0387848998039087" "3" "0.0959014978655202" "gluconeogenesis" "AraCyc" "16" "0.0233962218174088" "2" "0.19656381496789" "mixed acid fermentation" "AraCyc" "16" "0.000980491518516194" "2" "0.114928647594948" "TCA cycle variation II" "AraCyc" "16" "1.27235078627732e-07" "2" "0.0185163614446447" "Alanine and aspartate metabolism" "KEGG" "16" "0.000232887554176901" "2" "0.0496231927125554" "Cyanoamino acid metabolism" "KEGG" "16" "5.98001130772697e-07" "2" "0.0285021412167452" "transport ATPases" "FunCat" "15" "1.09626099075546e-06" "2" "0.0171156033063331" "Tyrosine metabolism" "KEGG" "15" "0.00622960689527297" "2" "0.0918768083782674" "lactose degradation IV" "AraCyc" "14" "9.3978528971621e-14" "3" "4.16322461997362e-05" "gamma-Hexachlorocyclohexane degradation" "KEGG" "14" "2.22569484704954e-05" "2" "0.00984485833717028" "Galactose metabolism" "KEGG" "13" "0.00691654472217787" "2" "0.0496231927125554" "fatty acid biosynthesis" "TAIR-GO" "12" "1.39595669761922e-06" "2" "0.00259497299849381" "formylTHF biosynthesis" "AraCyc" "12" "9.90490645356508e-05" "2" "0.0216764619119776" "galactose degradation I" "AraCyc" "12" "4.58078616988848e-11" "2" "0.00122347143980744" "Propanoate metabolism" "KEGG" "12" "0.00477638315294834" "2" "0.0456896925993337" "Valine, leucine and isoleucine degradation" "KEGG" "12" "0.0181388546433729" "3" "0.0137597022088818" "methylglyoxal degradation" "AraCyc" "11" "2.59421872497996e-06" "2" "0.0106783419089390" "threonine degradation" "AraCyc" "11" "4.47474696525931e-05" "2" "0.0328107646386073" "aspartate/ornithin cycle / nitric oxid from glutamate" "BioPath" "10" "2.44391003482272e-06" "1" "0.0408550047394435" "Glutamate/glutamine from nitrogen fixation" "BioPath" "10" "0.000313794591555142" "1" "0.0355452189290663" "sterol biosynthesis" "BioPath" "10" "0.0364204900960281" "1" "0.122237375348969" "cysteine biosynthesis" "TAIR-GO" "10" "7.76494617772605e-12" "1" "0.00108178087651381" "cysteine biosynthesis from serine" "TAIR-GO" "10" "0" "1" "0" "hypersensitive response" "TAIR-GO" "10" "5.77356279384588e-09" "1" "0.00521318632575415" "leucine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "methionine biosynthesis from L-homoserine via cystathione" "TAIR-GO" "10" "0" "1" "0" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "10" "6.76907613058156e-08" "1" "0.0094957922883949" "response to bacteria" "TAIR-GO" "10" "0" "1" "0" "response to UV" "TAIR-GO" "10" "1.0062038603167e-05" "1" "0.0248876755428067" "ammonia assimilation cycle" "AraCyc" "10" "0.000236030612499548" "1" "0.0354346722397419" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "8.4609777826559e-07" "1" "0.00660537633333738" "glutamine biosynthesis I" "AraCyc" "10" "7.64724917632827e-05" "1" "0.0216128434381828" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "nitrate assimilation pathway" "AraCyc" "10" "0.00140674948557664" "1" "0.0433207787968150" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "10" "4.80076994195873e-06" "1" "0.0216128434381828" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "10" "0.000999750547198633" "1" "0.0501712799745603" "Ascorbate and aldarate metabolism" "KEGG" "10" "0.0381576874399136" "1" "0.144951422685618" "Fluorene degradation" "KEGG" "10" "0.00111419842603281" "1" "0.0602146042337256" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "0.0303591027281475" "1" "0.173624076258334" "Pantothenate and CoA biosynthesis" "KEGG" "10" "0.00102669033013008" "2" "0.0155665331966341" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "0.00313052695001566" "1" "0.0999642219186636" "brassinosteroid biosynthesis" "LitPath" "10" "0.00374798618915117" "1" "0.0578930852959796" "sterol and brassinosteroid biosynthesis" "LitPath" "10" "0.000358191734581787" "1" "0.0308911204387728" "Phytic acid biosynthesis" "BioPath" "9" "0.00208259527619587" "1" "0.0994265288639464" "methylglyoxal catabolism" "TAIR-GO" "9" "3.87142919507367e-13" "1" "0.000365061486636309" "myo-inositol biosynthesis" "TAIR-GO" "9" "0" "1" "0" "nutrient import" "TAIR-GO" "9" "0" "1" "0" "protein binding" "TAIR-GO" "9" "6.25481129414538e-10" "1" "0.00351836584697992" "proton transport" "TAIR-GO" "9" "8.46044538057238e-09" "1" "0.00351836584697992" "carbon monoxide dehydrogenase pathway" "AraCyc" "9" "0.00203695450115527" "3" "0.0139658204537699" "eukaryotic plasma membrane / membrane attached " "FunCat" "9" "1.33111249426003e-13" "1" "0.000874728907597622" "fermentation" "FunCat" "9" "4.21319923860157e-06" "1" "0.0203491129043183" "1- and 2-Methylnaphthalene degradation" "KEGG" "9" "2.74319238720425e-05" "1" "0.0398761315224256" "Bile acid biosynthesis" "KEGG" "9" "0.00239594989210396" "1" "0.0676356000475559" "Streptomycin biosynthesis" "KEGG" "9" "0.00064545590137213" "1" "0.0463121244341062" "Early light-inducible proteins" "BioPath" "8" "1.05688560444935e-05" "1" "0.0104722520642505" "ATP-dependent proteolysis" "TAIR-GO" "8" "6.26198924153674e-07" "2" "0.00099291618734999" "lipid transport" "TAIR-GO" "8" "5.2269395542175e-07" "1" "0.00720955840938746" "response to high light intensity" "TAIR-GO" "8" "1.19734917162684e-09" "1" "0.00108178087651381" "lipid transport " "FunCat" "8" "1.96236697922294e-08" "1" "0.00772123579799913" "transported compounds (substrates)" "FunCat" "8" "0" "1" "0" "Fatty acid biosynthesis (path 1)" "KEGG" "8" "0.0113388990993277" "1" "0.0915244530464607" "Tetracycline biosynthesis" "KEGG" "8" "3.81393106719522e-06" "1" "0.00417318210285987" "Synthesis of membrane lipids in plastids" "AcylLipid" "8" "0.00362137055978336" "1" "0.0404932784778818" "cellulose biosynthesis" "TAIR-GO" "7" "3.03991608598771e-05" "1" "0.0179815099578937" "growth" "TAIR-GO" "7" "0.0274188912103584" "1" "0.0771123956368829" "unidimensional cell growth" "TAIR-GO" "7" "0.00141900299396099" "1" "0.0248876755428067" "C-compound and carbohydrate utilization " "FunCat" "7" "2.4370063467647e-10" "1" "0.000294858824232409" "energy" "FunCat" "7" "3.26772239141805e-09" "1" "0.000874728907597622" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "7" "3.96879014132669e-12" "1" "0"