"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "sum.of.scores" "sum.of.genes" "Glucosinolate Metabolism" "LitPath" 280 28 "Biosynthesis of Amino Acids and Derivatives" "BioPath" 242 33 "tryptophan biosynthesis" "TAIR-GO" 226 25 "tryptophan biosynthesis" "AraCyc" 218 25 "Phenylpropanoid Metabolism" "BioPath" 213 26 "Glutathione metabolism" "BioPath" 196 27 "Glutathione metabolism" "KEGG" 142 21 "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" 132 14 "Sulfur metabolism" "KEGG" 128 14 "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" 126 14 "Shikimate pathway" "LitPath" 124 13 "Selenoamino acid metabolism" "KEGG" 114 13 "glucosinolate biosynthesis from tryptophan" "AraCyc" 110 11 "Trp biosyntesis" "LitPath" 110 11 "Purine metabolism" "KEGG" 84 9 "amino acid metabolism" "FunCat" 84 11 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 80 8 "Flavonoid and anthocyanin metabolism" "BioPath" 73 9 "glucosinolate biosynthesis" "TAIR-GO" 70 7 "indoleacetic acid biosynthesis" "TAIR-GO" 70 7 "tryptophan catabolism" "TAIR-GO" 70 7 "IAA biosynthesis" "AraCyc" 70 7 "IAA biosynthesis I" "AraCyc" 70 7 "Ascorbate and aldarate metabolism" "KEGG" 48 5 "nucleotide metabolism" "FunCat" 46 5 "indole glucosinolate biosynthesis" "TAIR-GO" 40 4 "response to red light" "TAIR-GO" 40 4 "shade avoidance" "TAIR-GO" 40 4 "Fluorene degradation" "KEGG" 40 4 "gamma-Hexachlorocyclohexane degradation" "KEGG" 40 4 "ORGAN DATA SET" "quantDE" 5.379151 "maxDE" 6.773877 "ORGAN DATA SET" "Glucosinolate Metabolism" "LitPath" 100 8.56580784105302E-114 10 2.67971775646871E-015 "Biosynthesis of Amino Acids and Derivatives" "BioPath" 88 9.72586653277974E-035 11 0.00000216663207503071 "Glutathione metabolism" "BioPath" 68 1.29556641368318E-044 9 0.0000000255432939486271 "Phenylpropanoid Metabolism" "BioPath" 42 0.000000480629678804793 5 0.0371996519413349 "glucosinolate biosynthesis" "TAIR-GO" 40 1.05307477658135E-047 4 0.000000165797355903865 "Selenoamino acid metabolism" "KEGG" 40 2.89201570846445E-033 5 0.000000460226857628775 "Sulfur metabolism" "KEGG" 40 1.3185477481414E-036 5 0.0000000615340126721213 "sulfate assimilation III" "AraCyc" 36 8.00519823815771E-023 5 0.00000532180396416211 "Lipid signaling" "AcylLipid" 36 3.56721928296906E-023 5 0.000222729304039029 "tryptophan biosynthesis" "TAIR-GO" 30 7.60510778940652E-024 3 0.000320682928147938 "glucosinolate biosynthesis from tryptophan" "AraCyc" 30 0 3 0 "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" 30 8.70034357699478E-018 3 0.000971519562135296 "Purine metabolism" "KEGG" 30 3.34914502839484E-016 3 0.00337379643878903 "jasmonic acid biosynthesis" "TAIR-GO" 26 7.32160822348505E-019 3 0.000506641358440202 "jasmonic acid biosynthesis" "AraCyc" 26 9.05217140203236E-021 3 0.0000984299705769385 "tryptophan biosynthesis" "AraCyc" 22 7.18827080502204E-015 3 0.000441655765040054 "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" 20 0.00000183586851902724 2 0.0455900514149934 "Flavonoid and anthocyanin metabolism" "BioPath" 20 0.000000000384798597904544 2 0.0455900514149934 "indoleacetic acid biosynthesis" "TAIR-GO" 20 1.52174988545903E-024 2 0.0000822417874254827 "response to wounding" "TAIR-GO" 20 0.000000000173778923248191 2 0.00988848371373308 "tryptophan catabolism" "TAIR-GO" 20 0 2 0 "cysteine biosynthesis I" "AraCyc" 20 0.000000000142699360234934 3 0.00211686005181889 "glucosinolate biosynthesis from homomethionine" "AraCyc" 20 5.12612438875747E-023 2 0.0000270392474932113 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 20 1.20012396666328E-025 2 0.0000109265539741535 "IAA biosynthesis" "AraCyc" 20 1.28203541878051E-016 2 0.000553959545935767 "IAA biosynthesis I" "AraCyc" 20 5.06083525819192E-020 2 0.000218062572242119 "Shikimate pathway" "LitPath" 20 0.000226293336797607 2 0.0724442114929209 "Trp biosyntesis" "LitPath" 20 0.000000000520993909060121 2 0.0071488928941991 "response to water deprivation" "TAIR-GO" 18 0 2 0 "toxin catabolism" "TAIR-GO" 16 0.00000000432363046096411 4 0.00204385157927029 "dissimilatory sulfate reduction" "AraCyc" 16 3.15281641273E-015 2 0.0000927282151957122 "lipoxygenase pathway" "AraCyc" 16 0.000000000000311339281498703 2 0.000553959545935767 "C-compound and carbohydrate metabolism" "FunCat" 16 0.00318886640097537 3 0.0321482004457211 "nitrogen and sulfur utilization " "FunCat" 16 2.43717225616285E-021 2 0.000014561663646069 "Glutathione metabolism" "KEGG" 14 0.00000744000814318332 3 0.000887872479620808 "glycolysis and gluconeogenesis" "FunCat" 12 0.000147036783094076 2 0.0168730962006501 "Branched-chain amino acids from aspartate" "BioPath" 10 0.000250385354972258 1 0.0511117817033361 "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" 10 0.00141953401587853 1 0.0708042327562005 "sucrose metabolism" "BioPath" 10 0.0000366820840713828 1 0.030783802183601 "indole glucosinolate biosynthesis" "TAIR-GO" 10 0 1 0 "response to jasmonic acid stimulus" "TAIR-GO" 10 0.0000000184484569389346 1 0.0083663681385991 "response to red light" "TAIR-GO" 10 0 1 0 "shade avoidance" "TAIR-GO" 10 0 1 0 "sulfate assimilation" "TAIR-GO" 10 0.000000184635027193608 1 0.01100822807067 "alanine biosynthesis II" "AraCyc" 10 0.0000171372617708075 1 0.0486981013160615 "histidine biosynthesis" "AraCyc" 10 0.00000091967069129741 1 0.0211347274192392 "histidine biosynthesis I" "AraCyc" 10 0.000000284976707129192 1 0.0186621341739877 "homomethionine biosynthesis" "AraCyc" 10 0 1 0 "leucine biosynthesis" "AraCyc" 10 0.0000000733992552781423 1 0.0211347274192392 "phenylalanine biosynthesis II" "AraCyc" 10 0.0000028581626142516 1 0.0385277591317792 "phenylalanine degradation I" "AraCyc" 10 0.000101731736861849 1 0.0559591945399956 "tyrosine degradation" "AraCyc" 10 0.00000000213456828047007 1 0.0083719808711951 "amino acid metabolism" "FunCat" 10 0.00445057946130739 2 0.0119483996544524 "biogenesis of chloroplast" "FunCat" 10 0.0000466151706364696 1 0.0336082408995607 "nucleotide metabolism" "FunCat" 10 0 1 0 "Alkaloid biosynthesis I" "KEGG" 10 0.0000146869922759057 1 0.0218841704615938 "Ascorbate and aldarate metabolism" "KEGG" 10 0.0000757075051646311 1 0.0278629381216103 "Cysteine metabolism" "KEGG" 10 0.0000937543935711897 2 0.00266153462645698 "Fluorene degradation" "KEGG" 10 0.000000706252122978732 1 0.0104201204182927 "Galactose metabolism" "KEGG" 10 0.00018869085870218 1 0.0415133855179556 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 0.00000302553601336713 1 0.0133183661652403 "Novobiocin biosynthesis" "KEGG" 10 0.0000000433101358715184 1 0.00784435560636314 "Phenylalanine metabolism" "KEGG" 10 0.00734879233456829 1 0.232894450188765 "Stilbene, coumarine and lignin biosynthesis" "KEGG" 10 0.0229395378143129 1 0.280137596936017 "Tyrosine metabolism" "KEGG" 10 0.000855637667247092 1 0.0656466177224715 "Valine, leucine and isoleucine biosynthesis" "KEGG" 10 0.0000937543935711897 1 0.0415133855179556 "oxylipin pathway" "LitPath" 10 0.00000000000609321488083084 1 0.000590839382920397 "Phytic acid biosynthesis" "BioPath" 8 0.00051316752577022 1 0.0439015697633813 "abscisic acid mediated signaling" "TAIR-GO" 8 0.0000000359367539359865 1 0.00248765488651776 "response to cold" "TAIR-GO" 8 0.0000018949739881298 1 0.0083663681385991 "response to salt stress" "TAIR-GO" 8 0.00000000799941313990099 1 0.00248765488651776 "lipases pathway" "AraCyc" 8 0.00189612678804911 1 0.0522827977896196 "degradation " "FunCat" 8 0.0000000707380470500884 1 0.0065771137446064 "lipid, fatty acid and isoprenoid degradation" "FunCat" 8 0.000000177173549269519 1 0.00708356746507116 "stress response" "FunCat" 8 0 1 0 "Ion channels" "KEGG" 8 0.000423321321808625 3 0.00159358510706797 "Ligand-Receptor Interaction" "KEGG" 8 0.000519980874869685 3 0.00185123236932871 "STRESS DATA SET" "quantDE" 3.410937 "maxDE" 6.449255 "STRESS DATA SET" "Glucosinolate Metabolism" "LitPath" 70 6.37474388350911E-058 7 0.00000000149657007931106 "Phenylpropanoid Metabolism" "BioPath" 70 4.347709671656E-031 7 0.000151557608682666 "tryptophan biosynthesis" "TAIR-GO" 50 8.04657569886129E-052 5 0.00000010235330252799 "Biosynthesis of Amino Acids and Derivatives" "BioPath" 44 0.0000000000205908130824991 6 0.000791119551374574 "Glutathione metabolism" "BioPath" 44 1.73367827753888E-026 6 0.00000263595659600037 "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" 40 1.03391396484539E-026 4 0.000150654360523348 "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" 40 1.46446857442302E-029 4 0.0000209149245705261 "Shikimate pathway" "LitPath" 40 1.10644546581934E-015 4 0.00202111569905122 "Trp biosyntesis" "LitPath" 40 2.00859682391354E-029 4 0.0000269823907257762 "Sulfur metabolism" "KEGG" 39 8.77356575444036E-037 4 0.00000064644546017122 "tryptophan biosynthesis" "AraCyc" 32 5.05961191203164E-031 4 0.00000118134010315745 "glucosinolate biosynthesis from tryptophan" "AraCyc" 30 0 3 0 "Selenoamino acid metabolism" "KEGG" 30 1.24174338316844E-022 3 0.0000887548408119252 "Stilbene, coumarine and lignin biosynthesis" "KEGG" 30 6.1057577532143E-016 3 0.00819237049103012 "Flavonoid and anthocyanin metabolism" "BioPath" 20 0.00000000000157332719820449 2 0.0156609675687042 "indoleacetic acid biosynthesis" "TAIR-GO" 20 9.87939830613407E-025 2 0.0000349485376087692 "response to wounding" "TAIR-GO" 20 0.000000000119306975928513 2 0.004484194572519 "tryptophan catabolism" "TAIR-GO" 20 0 2 0 "cysteine biosynthesis I" "AraCyc" 20 0.000000000000204929051381672 2 0.00320579357380174 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 20 7.62709091489001E-029 2 0.00000168685429168466 "IAA biosynthesis" "AraCyc" 20 1.10028364467187E-019 2 0.0000889444054197893 "IAA biosynthesis I" "AraCyc" 20 3.72715990915986E-023 2 0.0000345019125704878 "lignin biosynthesis" "AraCyc" 20 0.0000000000710557091606108 2 0.00452552840229238 "sulfate assimilation III" "AraCyc" 20 0.0000000000172188224331504 2 0.00197509847337136 "amino acid metabolism" "FunCat" 20 0.0000000000000372350431795934 2 0.00111474937955824 "Purine metabolism" "KEGG" 20 0.00000000636102745434508 2 0.0125693297062854 "core phenylpropanoid metabolism" "BioPath" 10 0.00329549390123659 1 0.0707400438501973 "anthranilate synthase complex" "TAIR-GO" 10 0.0000000000000403370116656578 1 0.000241470257874657 "cysteine biosynthesis" "TAIR-GO" 10 0.0000000000108861554335372 1 0.000717268869005546 "glucosinolate biosynthesis" "TAIR-GO" 10 0.000000823230594373772 1 0.00637177722639536 "indole glucosinolate biosynthesis" "TAIR-GO" 10 0 1 0 "phenylpropanoid metabolism" "TAIR-GO" 10 0.0000000324919378920339 1 0.00348149456030014 "response to pathogenic bacteria" "TAIR-GO" 10 0.000000000382332919215563 1 0.00234404592423998 "response to pathogenic fungi" "TAIR-GO" 10 0.00000000000274774290486161 1 0.000717268869005546 "response to red light" "TAIR-GO" 10 0 1 0 "response to UV" "TAIR-GO" 10 0.0000134844268831331 1 0.016897978921469 "shade avoidance" "TAIR-GO" 10 0 1 0 "alanine biosynthesis II" "AraCyc" 10 0.00000063268284735871 1 0.0156616665232929 "flavonoid biosynthesis" "AraCyc" 10 0.00000147970806595311 1 0.0181488444617278 "histidine biosynthesis" "AraCyc" 10 0.000000029075729401891 1 0.00654230901292754 "histidine biosynthesis I" "AraCyc" 10 0.00000000858443939358529 1 0.00575223072593775 "phenylalanine biosynthesis II" "AraCyc" 10 0.0000000953371747795362 1 0.0122348322915482 "phenylalanine degradation I" "AraCyc" 10 0.00000426630162516147 1 0.0181488444617278 "suberin biosynthesis" "AraCyc" 10 0.00000275599387843715 1 0.00826132324417337 "tyrosine degradation" "AraCyc" 10 0.0000000000555876120646871 1 0.00252556864565805 "biogenesis of cell wall" "FunCat" 10 0.00000000952919094845208 1 0.00816118345429013 "metabolism of the cysteine - aromatic group" "FunCat" 10 0.0000000000000119265340064147 1 0.000193056243227487 "nucleotide metabolism" "FunCat" 10 0 1 0 "Alkaloid biosynthesis I" "KEGG" 10 0.00000657857916342338 1 0.0136490240832661 "Ascorbate and aldarate metabolism" "KEGG" 10 0.0000350126398270874 1 0.0174567133318244 "Cysteine metabolism" "KEGG" 10 0.0000435638881886196 1 0.0202172207868939 "Fluorene degradation" "KEGG" 10 0.000000302680583453609 1 0.00643026833485082 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 0.0000013217159150484 1 0.0082438581608715 "Novobiocin biosynthesis" "KEGG" 10 0.000000018034185194593 1 0.00482599416593748 "Phenylalanine metabolism" "KEGG" 10 0.00392768280432455 1 0.15947803100699 "Tyrosine metabolism" "KEGG" 10 0.000421543044837908 1 0.0420572169451559 "abscisic acid mediated signaling" "TAIR-GO" 9 0.00000000161889089162828 1 0.0014204069695875 "negative regulation of signal transduction" "TAIR-GO" 9 0 1 0 "negative regulation of transcription" "TAIR-GO" 9 0 1 0 "phosphoinositide-mediated signaling" "TAIR-GO" 9 0 1 0 "regulation of transcription" "TAIR-GO" 9 0 1 0 "response to abiotic stimulus" "TAIR-GO" 9 0.0000000000000383843123728488 1 0.000241470257874657 "response to cold" "TAIR-GO" 9 0.0000001484269545014 1 0.00482620644808185 "signal transduction" "TAIR-GO" 9 0 1 0 "sulfur metabolism" "TAIR-GO" 9 0 1 0 "stress response" "FunCat" 9 0 1 0 "Phosphatidylinositol signaling system" "KEGG" 9 0.000267531761905207 1 0.0311829564234042 "Signal Transduction" "KEGG" 9 0.000365896196412707 1 0.0329054027861359 "HORMONE DATA SET" "quantDE" 2.308743 "maxDE" 6.2446099 "HORMONE DATA SET" "Biosynthesis of Amino Acids and Derivatives" "BioPath" 84 0.00000000000103874169035341 13 0.00173417889220165 "Phenylpropanoid Metabolism" "BioPath" 61 0.0000201656379175411 10 0.03820341033884 "Glucosinolate Metabolism" "LitPath" 60 1.47653826243611E-039 6 0.0000019143489824138 "Glutathione metabolism" "BioPath" 48 0.000000000000568317909948507 8 0.000586396729620696 "amino acid metabolism" "FunCat" 44 0.000000725717909284334 6 0.0197397923240242 "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" 42 0.000000000000122854990475949 5 0.00305894804970624 "colanic acid building blocks biosynthesis" "AraCyc" 40 0.00000000000135716519140407 7 0.00179933772886015 "Sulfur metabolism" "KEGG" 39 7.28626006277946E-019 4 0.000711347379376398 "glycolysis and gluconeogenesis" "FunCat" 38.5 0.00000875256690235148 6 0.0365579386510673 "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" 36 0.00000000123737825575288 5 0.0120552068992164 "C-compound and carbohydrate utilization " "FunCat" 36 0 5 0 "Selenoamino acid metabolism" "KEGG" 34 0.00000000000215770360056412 4 0.00309055529498561 "Shikimate pathway" "LitPath" 34 0.00000000261601702993039 4 0.0144448408776502 "Folding, Sorting and Degradation" "KEGG" 31 0.0310868235730923 5 0.157557627730623 "Gluconeogenesis from lipids in seeds" "BioPath" 30 0.0000433127860032217 5 0.0315221153343322 "tryptophan biosynthesis" "TAIR-GO" 30 3.55511212348518E-015 3 0.00444206623660712 "glycerol degradation II" "AraCyc" 28 0.000000164167273913363 4 0.0356648976449397 "sulfate assimilation III" "AraCyc" 26 0.0000268897165656044 4 0.0102633715296893 "Glutamate metabolism" "KEGG" 26 0.0000905188277670998 3 0.057538049259218 "alanine biosynthesis II" "AraCyc" 24 0.000000000170336632224979 3 0.017669973567357 "galactose degradation I" "AraCyc" 24 3.91454038087369E-030 5 0.0000000297040425630189 "lactose degradation IV" "AraCyc" 24 3.91454038087369E-030 5 0.0000000297040425630189 "phenylalanine biosynthesis II" "AraCyc" 24 0.00000000000219599856917734 3 0.011240994158473 "Purine metabolism" "KEGG" 24 0.00191003704915634 3 0.14745712830224 "Flavonoid and anthocyanin metabolism" "BioPath" 23 0.00000037338365266367 4 0.0432530914240072 "GDP-D-rhamnose biosynthesis" "AraCyc" 22 4.02884291060782E-016 3 0.00104857980954804 "tryptophan biosynthesis" "AraCyc" 22 0.000000326095475114249 3 0.0202307413031664 "assimilation of ammonia, metabolism of the glutamate group" "FunCat" 22 0.00000000028577873610093 3 0.00207269007830425 "dTDP-rhamnose biosynthesis" "AraCyc" 21 0.0000373884293970199 3 0.0981330219604155 "Glutamate/glutamine from nitrogen fixation" "BioPath" 20 0.000000000495002052293006 2 0.00952684826110647 "indoleacetic acid biosynthesis" "TAIR-GO" 20 2.57226426054328E-018 2 0.000661686812508934 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 20 1.40139927057465E-017 2 0.000264051587779729 "glucosinolate biosynthesis from tryptophan" "AraCyc" 20 2.44103371343475E-021 2 0.0000680730009201473 "glycerol metabolism" "AraCyc" 20 1.78107782012786E-016 3 0.00262488465060084 "nitrogen and sulfur utilization " "FunCat" 20 0.0000000000000412737286328402 2 0.00266729979331543 "Nitrogen metabolism" "KEGG" 20 0.00259994157527115 2 0.0942478780993263 "Trp biosyntesis" "LitPath" 20 0.0000000629108600461859 2 0.0237380912710667 "protein folding" "TAIR-GO" 18 0 3 0 "response to heat" "TAIR-GO" 18 0.00000000104563776591375 3 0.00108439644442406 "serine-isocitrate lyase pathway" "AraCyc" 18 0.0203852264995456 3 0.11140355608489 "Ascorbate and aldarate metabolism" "KEGG" 18 0.0000982007177506532 2 0.0518164165955378 "Methionine metabolism" "KEGG" 18 0.00000262041535611489 3 0.00412044955332409 "Protein folding and associated processing" "KEGG" 18 0.00000142608598235559 3 0.0108521290298695 "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" 18 0.000000369987259168084 4 0.00462856918882902 "transport " "FunCat" 17 4.9209263322554E-028 3 0 "UDP-carbohydrate metabolism" "BioPath" 16 0.00000473583571698623 2 0.0407682547206055 "nucleotide metabolism" "FunCat" 16 0 2 0 "Arginine and proline metabolism" "KEGG" 16 0.013283869280357 2 0.171725484296603 "Citrate cycle (TCA cycle)" "KEGG" 16 0.0156485645356893 3 0.0497159154758195 "Galactose metabolism" "KEGG" 16 0.00252005835663355 2 0.087503134915978 "stress response" "FunCat" 15 0 2 0 "transport facilitation" "FunCat" 15 0 2 0.0000189145983097641 "Phosphatidylinositol signaling system" "KEGG" 15 0.00368640274648478 3 0.0273018453979739 "Signal Transduction" "KEGG" 15 0.00538832210310331 3 0.0300322034192981 "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" 14 0.00511596105270894 2 0.0878926346788302 "aerobic respiration -- electron donors reaction list" "AraCyc" 14 0.0000227613351163342 2 0.0590871958053502 "methionine biosynthesis II" "AraCyc" 14 0.00000686651227418941 2 0.0143566766571864 "tyrosine biosynthesis I" "AraCyc" 14 0.00000000925304131033319 2 0.00475953501331462 "C-compound and carbohydrate regulation of C-compound and carbohydrate utilization " "FunCat" 14 0 2 0 "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" 14 0.0479609328016723 2 0.170277642222542 "regulation of C-compound and carbohydrate utilization " "FunCat" 14 0 2 0 "cytoplasmic and nuclear protein degradation" "FunCat" 13 4.19107912268522E-015 2 0.000074181924434279 "ascorbic acid biosynthesis" "BioPath" 12 0.00089781522384445 2 0.0361130393776332 "fatty acid beta oxidation complex" "BioPath" 12 0.000485412889987596 2 0.0407682547206055 "ascorbate glutathione cycle" "AraCyc" 12 0.000736660093018131 2 0.0256871335322221 "formaldehyde assimilation I (serine pathway)" "AraCyc" 12 0.0436611100557746 2 0.151862245844706 "formylTHF biosynthesis" "AraCyc" 12 0.000275682826103275 2 0.035257477908822 "galactokinase, colanic acid building blocks biosynthesis" "AraCyc" 12 0.000000000166415550457636 3 0.0000871874726608647 "galactokinase, galactose degradation I" "AraCyc" 12 0.000000000166415550457636 3 0.0000871874726608647 "galactokinase, lactose degradation IV" "AraCyc" 12 0.000000000166415550457636 3 0.0000871874726608647 "glucose conversion" "AraCyc" 12 0.0475230056232337 2 0.225221865030359 "UDP-glucose conversion" "AraCyc" 12 0.0400242035513279 2 0.214310292933004 "One carbon pool by folate" "KEGG" 12 0.00000151006661244436 2 0.0107637528785428 "GDP-carbohydrate biosynthesis" "BioPath" 10 0.0000144577013447755 1 0.0464798469807079 "sucrose metabolism" "BioPath" 10 0.00694949816591098 1 0.144081837919135 "Tocopherol biosynthesis" "BioPath" 10 0.00000158742995146394 1 0.0115931455919458 "anthranilate synthase complex" "TAIR-GO" 10 0.0000000000880112572892089 1 0.00172456500301448 "aromatic amino acid family biosynthesis" "TAIR-GO" 10 0.00703291600790803 1 0.113392079417245 "aromatic amino acid family biosynthesis, anthranilate pathway" "TAIR-GO" 10 0 1 0 "aromatic amino acid family biosynthesis, shikimate pathway" "TAIR-GO" 10 0.00146657166655944 1 0.0867383705629447 "chlorophyll biosynthesis" "TAIR-GO" 10 0.0288461210358828 1 0.113392079417245 "de novo' GDP-L-fucose biosynthesis" "TAIR-GO" 10 0 1 0 "fatty acid beta-oxidation" "TAIR-GO" 10 0.0000230521590741756 1 0.023179214231799 "glucosinolate biosynthesis" "TAIR-GO" 10 0.000541116021556903 1 0.0409789374093254 "glutamine biosynthesis" "TAIR-GO" 10 0 1 0 "indole glucosinolate biosynthesis" "TAIR-GO" 10 0 1 0 "L-fucose biosynthesis" "TAIR-GO" 10 0 1 0 "methionine biosynthesis" "TAIR-GO" 10 0.000000169073885462889 1 0.00979306106593728 "response to biotic stimulus" "TAIR-GO" 10 0 1 0 "response to pathogenic bacteria" "TAIR-GO" 10 0.000000557140989186584 1 0.0158806439015562 "response to red light" "TAIR-GO" 10 0 1 0 "shade avoidance" "TAIR-GO" 10 0 1 0 "sugar mediated signaling" "TAIR-GO" 10 0.0000111120277903369 1 0.023179214231799 "sulfate assimilation" "TAIR-GO" 10 0.00012542914570202 1 0.0409789374093254 "sulfate reduction" "TAIR-GO" 10 0.0000000000880112572892089 1 0.00172456500301448 "sulfate reduction, APS pathway" "TAIR-GO" 10 0 1 0 "tryptophan catabolism" "TAIR-GO" 10 0.0000000000880112572892089 1 0.00172456500301448 "unidimensional cell growth" "TAIR-GO" 10 0.00533518803787834 1 0.099811034306198 "vitamin E biosynthesis" "TAIR-GO" 10 0.000000557140989186584 1 0.00979306106593728 "ammonia assimilation cycle" "AraCyc" 10 0.000570015364777947 1 0.0499214958398297 "arginine degradation II" "AraCyc" 10 0.0288402233124997 2 0.0406391247890535 "arginine degradation V" "AraCyc" 10 0.000164538715980165 2 0.0113820172096745 "dissimilatory sulfate reduction" "AraCyc" 10 0.000191365418386319 1 0.0307318955610073 "glutamine biosynthesis I" "AraCyc" 10 0.000191365418386319 1 0.0307318955610073 "histidine biosynthesis" "AraCyc" 10 0.00262709429386365 1 0.13823930215486 "histidine biosynthesis I" "AraCyc" 10 0.001032844945167 1 0.12417028107703 "homocysteine and cysteine interconversion" "AraCyc" 10 0.000120511173066884 1 0.0607528847880564 "IAA biosynthesis" "AraCyc" 10 0.00579392554567049 1 0.0844815188179763 "IAA biosynthesis I" "AraCyc" 10 0.000338209191315875 1 0.0499214958398297 "nitrate assimilation pathway" "AraCyc" 10 0.00316710885932269 1 0.0607528847880564 "tyrosine degradation" "AraCyc" 10 0.0000159386101533104 1 0.0607528847880564 "vitamin E biosynthesis" "AraCyc" 10 0.000102533530426453 1 0.0307318955610073 "C-compound, carbohydrate catabolism" "FunCat" 10 0.00664194782635336 2 0.0969096507901727 "nitrogen and sulfur metabolism" "FunCat" 10 0.00925228036289924 1 0.099778023360474 "phospholipid biosynthesis " "FunCat" 10 0.00000000158856292083944 1 0.00415992010695634 "Alkaloid biosynthesis I" "KEGG" 10 0.0375140420196921 1 0.172047493270314 "Cyanoamino acid metabolism" "KEGG" 10 0.00939142676835996 2 0.0518164165955378 "D-Glutamine and D-glutamate metabolism" "KEGG" 10 0.00000000129647628170081 1 0.00339805818810267 "Fluorene degradation" "KEGG" 10 0.00439104034693691 1 0.0910164880222389 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 0.0127649080220708 1 0.112849176872278 "Glycerophospholipid metabolism" "KEGG" 10 0.0464895078581637 1 0.184442031555333 "Novobiocin biosynthesis" "KEGG" 10 0.000485389599328345 1 0.0706497297062696 "Peptidoglycan biosynthesis" "KEGG" 10 0.00000109276121451692 1 0.0108261066342873 "Terpenoid biosynthesis" "KEGG" 10 0.0445875337724922 1 0.172047493270314 "Urea cycle and metabolism of amino groups" "KEGG" 10 0.0179439185334422 1 0.196961330461802 "Degradation of storage lipids and straight fatty acids" "AcylLipid" 10 0.00157700723648339 1 0.201121471593159 "metabolism of acyl-lipids in mitochondria" "AcylLipid" 10 0.000258475767662113 1 0.0927162854331065 "chlorophyll biosynthesis" "LitPath" 10 0.00162096485767015 1 0.0430370165447535 "Phe/Tyr biosynthesis" "LitPath" 10 0 1 0 "prenyl diphosphate (GPP,FPP, GGPP) biosynthesis" "LitPath" 10 0.0157137317858255 1 0.109052458265239 "tocopherol (vitamin E) biosynthesis" "LitPath" 10 0.000000000107913423779497 1 0.00141193234889066 "Tyr biosynthesis" "LitPath" 10 0 1 0 "abscisic acid mediated signaling" "TAIR-GO" 9 0.00000124494350555953 1 0.00979306106593728 "dTDP-rhamnose biosynthesis" "TAIR-GO" 9 0 1 0 "negative regulation of signal transduction" "TAIR-GO" 9 0 1 0 "negative regulation of transcription" "TAIR-GO" 9 0 1 0 "nutrient import" "TAIR-GO" 9 0 1 0 "phosphoinositide-mediated signaling" "TAIR-GO" 9 0 1 0 "regulation of transcription" "TAIR-GO" 9 0 1 0 "response to abiotic stimulus" "TAIR-GO" 9 0.0000000000440526709060425 1 0.00172456500301448 "response to cold" "TAIR-GO" 9 0.0000783309710592573 1 0.0315794696287529 "signal transduction" "TAIR-GO" 9 0 1 0 "sulfur metabolism" "TAIR-GO" 9 0 1 0 "eukaryotic plasma membrane / membrane attached " "FunCat" 9 0.00000000000191304325491424 1 0.00211705101569531 "transport ATPases" "FunCat" 9 0.0251756337230869 1 0.212850062011607 "Transcription (chloroplast)" "BioPath" 8 0.000328690470080357 1 0.0232421266168598 "defense response to bacteria" "TAIR-GO" 8 0 1 0 "fatty acid elongation" "TAIR-GO" 8 0.0000953889787688882 2 0.00217857573941414 "long-chain fatty acid metabolism" "TAIR-GO" 8 0.042272867998332 2 0.0312836519688214 "response to bacteria" "TAIR-GO" 8 0 1 0 "response to reactive oxygen species" "TAIR-GO" 8 0 1 0 "transcription initiation" "TAIR-GO" 8 0.00161856945099411 1 0.0409789374093254 "very-long-chain fatty acid metabolism" "TAIR-GO" 8 0.0131531992010658 2 0.022226962337808 "atty acid elongation -- unsaturated" "AraCyc" 8 0.0435136590436943 2 0.0406391247890535 "fatty acid elongation -- unsaturated" "AraCyc" 8 0.038779889404165 2 0.035257477908822 "methionine and S-adenosylmethionine synthesis" "AraCyc" 8 0.0000715121603453384 2 0.00124177616044785 "proteasome regulatory particle, base subcomplex (sensu Eukaryota)" "TAIR-GO" 7 0.00793258842632358 1 0.0623975733383775 "riboflavin and FMN and FAD biosynthesis" "AraCyc" 7 0.00000828478823914641 1 0.0307318955610073 "Riboflavin metabolism" "KEGG" 7 0.0000600781313015126 1 0.0435579192253123 "MUTANT DATA SET" "quantDE" 2.628819 "maxDE" 5.850141168 "MUTANT DATA SET" "Glucosinolate Metabolism" "LitPath" 50 1.16775472920349E-038 5 0.000000535267336078922 "Phenylpropanoid Metabolism" "BioPath" 40 3.99065846090376E-015 4 0.00463894799331812 "tryptophan biosynthesis" "TAIR-GO" 40 1.7974270619447E-047 4 0.000000148993349342434 "Aromatic amino acid (Phe, Tyr, Trp) metabolism" "BioPath" 30 2.05205064597724E-021 3 0.000408556427123576 "glucosinolate biosynthesis from tryptophan" "AraCyc" 30 0 3 0 "Shikimate pathway" "LitPath" 30 0.00000000000989526653740302 3 0.0067477092009798 "Trp biosyntesis" "LitPath" 30 1.08684543063288E-021 3 0.000232262207341148 "Biosynthesis of Amino Acids and Derivatives" "BioPath" 26 0.00000518098873289066 3 0.0226921400766574 "Glutathione metabolism" "BioPath" 26 0.0000000000000153332755880412 3 0.000975503495991078 "tryptophan biosynthesis" "AraCyc" 22 1.74528436690972E-024 3 0.00000638072489321135 "tryptophan catabolism" "TAIR-GO" 20 0 2 0 "glucosinolate biosynthesis from phenylalanine" "AraCyc" 20 7.63988385101898E-035 2 0.000000428701020451728 "IAA biosynthesis" "AraCyc" 20 1.54749342371201E-025 2 0.0000229825317658967 "IAA biosynthesis I" "AraCyc" 20 4.40965706796438E-029 2 0.00000885980316442738 "Phenylalanine, tyrosine and tryptophan biosynthesis" "KEGG" 20 5.78606286238915E-019 2 0.000142774499863077 "Chlorophyll biosynthesis and breakdown" "BioPath" 10 0.000111758361047308 1 0.0202889963350142 "Flavonoid and anthocyanin metabolism" "BioPath" 10 0.00000684059305289664 1 0.0522642875842171 "chlorophyll catabolism" "TAIR-GO" 10 0.0000000000000277187129636444 1 0.000210790256266322 "glucosinolate biosynthesis" "TAIR-GO" 10 0.00000000314781540329763 1 0.0019177606523424 "indole glucosinolate biosynthesis" "TAIR-GO" 10 0 1 0 "indoleacetic acid biosynthesis" "TAIR-GO" 10 0.00000000000191523645398838 1 0.000695489154120349 "jasmonic acid biosynthesis" "TAIR-GO" 10 0.000000813719171384251 1 0.0110733984964433 "response to red light" "TAIR-GO" 10 0 1 0 "response to stress" "TAIR-GO" 10 0.000000000000773873464485728 1 0.000419431245256882 "response to water deprivation" "TAIR-GO" 10 0 1 0 "response to wounding" "TAIR-GO" 10 0.0000100530932114154 1 0.0147322313644936 "shade avoidance" "TAIR-GO" 10 0 1 0 "toxin catabolism" "TAIR-GO" 10 0.00000075577275626045 1 0.0561919185598032 "jasmonic acid biosynthesis" "AraCyc" 10 0.00000000221866144460594 1 0.00347608733358814 "amino acid metabolism" "FunCat" 10 0.0000000226990294107641 1 0.0031769434468875 "metabolism of the cysteine - aromatic group" "FunCat" 10 1.76999761356107E-018 1 0.0000277692283862234 "nucleotide metabolism" "FunCat" 10 0 1 0 "Ascorbate and aldarate metabolism" "KEGG" 10 0.00000000111483242191561 1 0.00172664332140922 "Fluorene degradation" "KEGG" 10 0.00000000000555018678977577 1 0.000612674289989812 "gamma-Hexachlorocyclohexane degradation" "KEGG" 10 0.0000000000278313096022621 1 0.000791384537613048 "Glutathione metabolism" "KEGG" 10 0.0000000498603125088833 1 0.00484118642962738 "Purine metabolism" "KEGG" 10 0.000000656770134171464 1 0.00970934988487032 "Selenoamino acid metabolism" "KEGG" 10 0.00000000974833724728981 1 0.00248651299125032 "Stilbene, coumarine and lignin biosynthesis" "KEGG" 10 0.00000187341616132678 1 0.0252224678662227 "Sulfur metabolism" "KEGG" 10 0.00000000152771507016533 1 0.00133499970530558 "Lipid signaling" "AcylLipid" 10 0 1 0 "chlorophyll catabolism" "LitPath" 10 0.000000000277796679211663 1 0.00117200812818699