"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN TWO DATA SETS"	""	"sum.of.scores"	"sum.of.genes"	""	""
"Phenylpropanoid Metabolism"	"BioPath"	"82"	"12"	""	""
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"56"	"8"	""	""
"Phenylpropanoid pathway"	"LitPath"	"54"	"9"	""	""
"lignin biosynthesis"	"AraCyc"	"54"	"7"	""	""
"lignin biosynthesis"	"AraCyc"	"54"	"7"	""	""
"Lipid signaling"	"AcylLipid"	"54"	"12"	""	""
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"42"	"6"	""	""
"core phenylpropanoid metabolism"	"BioPath"	"40"	"6"	""	""
"Propanoate metabolism"	"KEGG"	"36"	"5"	""	""
"salicylic acid biosynthesis"	"TAIR-GO"	"34"	"4"	""	""
"salicylic acid biosynthesis"	"TAIR-GO"	"34"	"4"	""	""
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"32"	"4"	""	""
"ethylene biosynthesis"	"TAIR-GO"	"26"	"3"	""	""
"defense response"	"TAIR-GO"	"24"	"3"	""	""
"ORGAN DATA SET"	"quantDE"	"1.64133"	"maxDE"	"3.9821953"	"ORGAN DATA SET"
"STRESS DATA SET"	"quantDE"	"1.437288"	"maxDE"	"3.473785"	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	"2.212872"	"maxDE"	"5.8190826"	"HORMONE DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"28"	"1.48822311965196e-07"	"4"	"0.0115398536152237"
"Phenylpropanoid pathway"	"LitPath"	"28"	"7.31756659804104e-09"	"5"	"0.00435788102263696"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"22"	"0.000258683842629154"	"3"	"0.0446694384860388"
"salicylic acid biosynthesis"	"TAIR-GO"	"17"	"0"	"2"	"0"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"16"	"1.00409889326607e-11"	"2"	"0.00174090188738739"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"14"	"1.13462759180073e-06"	"2"	"0.00983416250735017"
"core phenylpropanoid metabolism"	"BioPath"	"14"	"2.1517069874984e-07"	"2"	"0.00561279774183934"
"lignin biosynthesis"	"AraCyc"	"14"	"1.69148738431851e-10"	"3"	"0.000216676943732902"
"secondary metabolism"	"FunCat"	"14"	"1.05240655255503e-11"	"3"	"0.00116164503677589"
"Biosynthesis of prenyl diphosphates"	"BioPath"	"10"	"0.000454414617907233"	"1"	"0.050377619664887"
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	"10"	"0.007772141122775"	"1"	"0.094676615520458"
"Phylloquinone biosynthesis"	"BioPath"	"10"	"1.79549106681328e-16"	"1"	"0.000966033142104806"
"salycilic acid biosynthesis"	"BioPath"	"10"	"1.88686602140619e-14"	"1"	"0.000390327775173137"
"ethylene biosynthesis"	"TAIR-GO"	"10"	"6.51979372957415e-14"	"1"	"0.00129110488743421"
"gibberellic acid catabolism"	"TAIR-GO"	"10"	"9.91465566691536e-15"	"1"	"0.00046679557527372"
"lignin biosynthesis"	"TAIR-GO"	"10"	"1.12514322235797e-11"	"1"	"0.00165322537127185"
"phenylpropanoid metabolism"	"TAIR-GO"	"10"	"1.49200207752710e-13"	"1"	"0.00069733801261838"
"systemic acquired resistance"	"TAIR-GO"	"10"	"5.84171071140516e-15"	"1"	"0.000972292559763212"
"alanine biosynthesis II"	"AraCyc"	"10"	"3.24509668309888e-10"	"2"	"0.000640770856284115"
"menaquinone biosynthesis"	"AraCyc"	"10"	"4.9210288616285e-17"	"1"	"0.00165621487525272"
"phenylalanine biosynthesis II"	"AraCyc"	"10"	"4.30012660829205e-11"	"2"	"0.000435128856101528"
"salicylic acid biosynthesis"	"AraCyc"	"10"	"7.50869384532573e-14"	"1"	"0.000699143148736029"
"Biosynthesis of Polyketides and Nonribosomal Peptides"	"KEGG"	"10"	"7.83302447796723e-15"	"1"	"0.00075076701463768"
"Diterpenoid biosynthesis"	"KEGG"	"10"	"1.55927209215476e-10"	"1"	"0.00231550387373815"
"Propanoate metabolism"	"KEGG"	"10"	"3.2631826216879e-09"	"1"	"0.0142634957963634"
"Ubiquinone biosynthesis"	"KEGG"	"10"	"2.18308285582624e-15"	"1"	"0.00193686873994646"
"Lipid signaling"	"AcylLipid"	"10"	"8.93466133906645e-07"	"3"	"0.00375550870313984"
"Gibberellin metabolism"	"LitPath"	"10"	"0.000207525971958194"	"1"	"0.0511751109618833"
"giberelin catabolism"	"LitPath"	"10"	"7.427751053122e-14"	"1"	"0.000456162758872365"
"phylloquinone biosynthesis"	"LitPath"	"10"	"1.98113870440899e-07"	"1"	"0.075089637317653"
"phylloquinone biosynthesis, salicylic acid biosynthesis"	"LitPath"	"10"	"0"	"1"	"0"
"plastochinone and phylloquinone biosynthesis"	"LitPath"	"10"	"9.69814992363623e-11"	"1"	"0.0223476892880649"
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	"10"	"7.65258136380956e-05"	"1"	"0.0405332580121241"
"Ion channels"	"KEGG"	"8"	"1.85264783223601e-07"	"4"	"9.10922001086394e-06"
"Ligand-Receptor Interaction"	"KEGG"	"8"	"2.35698286461100e-07"	"4"	"1.11298858424308e-05"
"defense response"	"TAIR-GO"	"7"	"1.24877755748916e-05"	"1"	"0.0083423102963036"
"MUTANT DATA SET"	"quantDE"	"1.869698"	"maxDE"	"5.95874743"	"MUTANT DATA SET"
"Phenylpropanoid Metabolism"	"BioPath"	"54"	"4.24359867992941e-15"	"8"	"0.00262418935793190"
"response to pathogenic bacteria"	"TAIR-GO"	"44"	"0"	"6"	"0"
"Lipid signaling"	"AcylLipid"	"44"	"4.52352048399559e-13"	"9"	"0.00776447852502092"
"Biosynthesis of Amino Acids and Derivatives"	"BioPath"	"34"	"8.72813618291331e-05"	"5"	"0.0699365235004218"
"tryptophan biosynthesis"	"TAIR-GO"	"34"	"2.32181012325084e-31"	"5"	"3.70893693761787e-07"
"tryptophan biosynthesis"	"AraCyc"	"34"	"4.74793866698938e-33"	"5"	"1.07381645959085e-06"
"Shikimate pathway"	"LitPath"	"34"	"3.29603890800995e-14"	"5"	"0.00105777663389261"
"Trp biosyntesis"	"LitPath"	"34"	"8.94415785981263e-26"	"5"	"5.52517477780409e-06"
"Aromatic amino acid  (Phe, Tyr, Trp) metabolism"	"BioPath"	"28"	"4.58354796015297e-13"	"4"	"0.00252201843779516"
"core phenylpropanoid metabolism"	"BioPath"	"26"	"7.4930321713555e-13"	"4"	"0.00101128611254494"
"Propanoate metabolism"	"KEGG"	"26"	"3.01291998305299e-20"	"4"	"9.86322468752724e-05"
"Phenylpropanoid pathway"	"LitPath"	"26"	"4.22812678746974e-05"	"4"	"0.100756706368321"
"jasmonic acid biosynthesis"	"AraCyc"	"20"	"1.18470444882453e-16"	"3"	"9.17814890839682e-05"
"lignin biosynthesis"	"AraCyc"	"20"	"1.81798317953736e-10"	"2"	"0.0230620143283427"
"C-compound and carbohydrate metabolism"	"FunCat"	"19"	"0.0205101494755585"	"5"	"0.0864456653131665"
"Glutathione metabolism"	"BioPath"	"18"	"0.000119810643287136"	"3"	"0.0323018105711370"
"defense response"	"TAIR-GO"	"17"	"7.2487678455594e-10"	"2"	"0.0060808579789316"
"Methionin/SAM/ethylene metabolism from cysteine and aspartate"	"BioPath"	"16"	"3.99172226066301e-08"	"2"	"0.0151518435985317"
"ethylene biosynthesis"	"TAIR-GO"	"16"	"5.15680180421918e-17"	"2"	"0.000350856772365076"
"jasmonic acid biosynthesis"	"TAIR-GO"	"16"	"3.78253229418513e-10"	"2"	"0.0052382893774002"
"biosynthesis of proto- and siroheme"	"AraCyc"	"14"	"4.89850929974403e-07"	"2"	"0.0191169592644035"
"chlorophyll biosynthesis"	"AraCyc"	"14"	"1.16800738777507e-05"	"2"	"0.0355867712794217"
"intracellular signalling"	"FunCat"	"13"	"1.29194849872744e-08"	"3"	"0.00372500395045840"
"Alanine and aspartate metabolism"	"KEGG"	"12"	"5.61579972314791e-06"	"2"	"0.0131502308087934"
"beta-Alanine metabolism"	"KEGG"	"12"	"4.77421901031167e-08"	"2"	"0.00378399257638195"
"Butanoate metabolism"	"KEGG"	"12"	"5.09607890182445e-07"	"2"	"0.00720770197517296"
"Glutamate metabolism"	"KEGG"	"12"	"0.000640803938176069"	"2"	"0.0314907927563520"
"Phenylalanine, tyrosine and tryptophan biosynthesis"	"KEGG"	"12"	"0.000456760719144572"	"2"	"0.0314907927563520"
"Taurine and hypotaurine metabolism"	"KEGG"	"12"	"9.02104283317578e-16"	"2"	"3.94857160159992e-05"
"Benzoate degradation via CoA ligation"	"KEGG"	"11"	"0.0109241499591947"	"2"	"0.173519868876774"
"Inositol phosphate metabolism"	"KEGG"	"11"	"0.0218516438733855"	"2"	"0.206464583517261"
"Nicotinate and nicotinamide metabolism"	"KEGG"	"11"	"0.00371547981684203"	"2"	"0.146119344069835"
"Chlorophyll biosynthesis and breakdown"	"BioPath"	"10"	"0.00771740004739521"	"1"	"0.114813639194836"
"defense response to pathogenic bacteria, incompatible interaction"	"TAIR-GO"	"10"	"7.9714079103247e-11"	"1"	"0.00351836584697992"
"lignin biosynthesis"	"TAIR-GO"	"10"	"4.04829389080367e-07"	"1"	"0.0120605173531024"
"porphyrin biosynthesis"	"TAIR-GO"	"10"	"6.45951489960919e-07"	"1"	"0.0248876755428067"
"response to wounding"	"TAIR-GO"	"10"	"0.000362313511291096"	"1"	"0.0661076549868259"
"sulfate assimilation"	"TAIR-GO"	"10"	"3.38028164044244e-08"	"1"	"0.0094957922883949"
"dissimilatory sulfate reduction"	"AraCyc"	"10"	"1.78450556463702e-09"	"1"	"0.00387830239653422"
"flavonoid biosynthesis"	"AraCyc"	"10"	"2.41612082968400e-06"	"1"	"0.0542177434477122"
"lipases pathway"	"AraCyc"	"10"	"7.40057090476152e-06"	"1"	"0.0506476730823826"
"lipoxygenase pathway"	"AraCyc"	"10"	"2.89890580275991e-08"	"2"	"0.000525697148979672"
"sulfate assimilation III"	"AraCyc"	"10"	"0.000746056835251135"	"1"	"0.077357517728097"
"triacylglycerol degradation"	"AraCyc"	"10"	"2.61526743325138e-06"	"5"	"7.99911252404319e-05"
"biogenesis of chloroplast"	"FunCat"	"10"	"0.00149971166100016"	"1"	"0.162696694091128"
"C-compound and carbohydrate utilization "	"FunCat"	"10"	"2.05379689616581e-20"	"2"	"0"
"energy"	"FunCat"	"10"	"1.73623103535728e-18"	"2"	"1.54240406434310e-06"
"glycolysis and gluconeogenesis"	"FunCat"	"10"	"0.0334761006129154"	"2"	"0.160098458422646"
"lipid, fatty acid and isoprenoid degradation"	"FunCat"	"10"	"5.7095325510318e-08"	"1"	"0.0399765120293131"
"metabolism of energy reserves (e.g. glycogen, trehalose)"	"FunCat"	"10"	"0"	"2"	"0"
"nitrogen and sulfur utilization "	"FunCat"	"10"	"4.46084696774399e-10"	"1"	"0.00705500244715302"
"Glycerophospholipid metabolism"	"KEGG"	"10"	"2.04845751749428e-05"	"1"	"0.0524427025504285"
"Porphyrin and chlorophyll metabolism"	"KEGG"	"10"	"0.000370589680600892"	"1"	"0.069839792678203"
"Purine metabolism"	"KEGG"	"10"	"0.0112094905391310"	"1"	"0.253330513486011"
"Selenoamino acid metabolism"	"KEGG"	"10"	"0.000457143803600018"	"1"	"0.0839493249831696"
"Sulfur metabolism"	"KEGG"	"10"	"9.88010660486799e-05"	"1"	"0.048376289872525"
"chlorophyll and phyochromobilin biosynthesis"	"LitPath"	"10"	"8.85511654026456e-05"	"1"	"0.0720731568678426"
"cytokinin biosynthesis"	"TAIR-GO"	"9"	"1.00079964369661e-10"	"1"	"0.00213711361079263"
"mRNA processing"	"TAIR-GO"	"9"	"0"	"1"	"0"
"RNA processing"	"TAIR-GO"	"9"	"0"	"1"	"0"
"cis-zeatin biosynthesis"	"AraCyc"	"9"	"0"	"1"	"0"
"IAA conjugate biosynthesis II"	"AraCyc"	"9"	"0"	"1"	"0"
"Other translation factors"	"KEGG"	"9"	"2.07301126768584e-08"	"1"	"0.0369332711109489"
"response to ethylene stimulus"	"TAIR-GO"	"8"	"3.36617295923240e-07"	"2"	"0.00210399580559337"
"biogenesis of cell wall"	"FunCat"	"8"	"0.00169288661515132"	"2"	"0.0391019408159574"
"indole phytoalexin biosynthesis"	"TAIR-GO"	"7"	"0"	"1"	"0"
"response to auxin stimulus"	"TAIR-GO"	"7"	"1.32315346494976e-05"	"1"	"0.0120605173531024"
"salicylic acid biosynthesis"	"TAIR-GO"	"7"	"2.17349031736029e-10"	"1"	"0.000365061486636309"
"camalexin biosynthesis"	"AraCyc"	"7"	"0"	"1"	"0"
"Ascorbate and aldarate metabolism"	"KEGG"	"7"	"0.00529699262834755"	"1"	"0.0609242680970891"
"Fluorene degradation"	"KEGG"	"7"	"0.000230887650048497"	"1"	"0.0236349882743538"
"gamma-Hexachlorocyclohexane degradation"	"KEGG"	"7"	"0.000618488493827436"	"1"	"0.0299862350987213"
"camalexin biosynthesis"	"LitPath"	"7"	"0"	"1"	"0"