"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "126" "33" "" "" "monoterpene biosynthesis" "LitPath" "65" "7" "" "" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "60" "10" "" "" "monoterpene biosynthesis" "AraCyc" "55" "6" "" "" "detoxification" "FunCat" "51" "11" "" "" "Ascorbate and aldarate metabolism" "KEGG" "50" "5" "" "" "Fluorene degradation" "KEGG" "50" "5" "" "" "gamma-Hexachlorocyclohexane degradation" "KEGG" "50" "5" "" "" "detoxification involving cytochrome P450 " "FunCat" "43" "7" "" "" "fatty acid metabolism" "TAIR-GO" "40" "4" "" "" "fatty acid modulation" "LitPath" "40" "4" "" "" "ORGAN DATA SET" "quantDE" "4.177892" "maxDE" "5.8548514" "ORGAN DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "42" "1.40523929438933e-36" "15" "7.08802454055057e-13" "Methane metabolism" "KEGG" "32" "3.04086426885514e-31" "14" "5.13595422268477e-13" "Phenylalanine metabolism" "KEGG" "32" "1.24021708094095e-26" "14" "1.55084822013385e-12" "Prostaglandin and leukotriene metabolism" "KEGG" "32" "4.61419978724960e-38" "14" "1.56723986036177e-14" "Phenylpropanoid Metabolism" "BioPath" "27" "2.76685430825965e-13" "7" "3.88570103460007e-05" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "27" "8.37732849733236e-14" "4" "0.00474020605760520" "terpenoid metabolism" "LitPath" "27" "9.70751844381303e-14" "4" "0.00547055402151069" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "20" "5.39289393364488e-08" "4" "0.0207906926575749" "monoterpenoid biosynthesis" "TAIR-GO" "19" "1.55767002601095e-33" "2" "2.57812850698644e-06" "monoterpene biosynthesis" "LitPath" "19" "9.3257087643007e-19" "2" "0.000475325176828304" "Lipid signaling" "AcylLipid" "18" "0.0287906651403633" "3" "0.538718267783837" "cation transport (Na, K, Ca , NH4, etc.) " "FunCat" "17" "4.75517927438153e-31" "2" "1.29923225239711e-06" "detoxification" "FunCat" "17" "0" "5" "0" "heavy metal ion transport (Cu, Fe, etc.)" "FunCat" "17" "0" "2" "0" "ion transport " "FunCat" "17" "0" "2" "0" "transport " "FunCat" "17" "1.48927841472583e-35" "2" "1.29923225239711e-06" "transport facilitation" "FunCat" "17" "0" "2" "1.29923225239711e-06" "transported compounds (substrates)" "FunCat" "17" "0" "2" "0" "Miscellaneous acyl lipid metabolism" "AcylLipid" "16" "0.0430269691151351" "8" "0.00642359893934631" "isoprenoid biosynthesis " "FunCat" "15" "4.8462083659903e-06" "3" "0.00442193295334705" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "15" "8.57116295312137e-07" "3" "0.00264444805976095" "Flavonoid and anthocyanin metabolism" "BioPath" "11" "1.23556006198222e-09" "4" "6.42523438539142e-05" "detoxification involving cytochrome P450 " "FunCat" "11" "5.28308053319265e-16" "2" "0.00026661878149579" "Glucosyltransferases for benzoic acids" "BioPath" "10" "1.62266085020044e-10" "1" "0.00484952223981089" "Transporters required for plastid development" "BioPath" "10" "0" "1" "0" "cell death" "TAIR-GO" "10" "3.4745322844501e-15" "1" "0.000471537884850618" "fatty acid alpha-oxidation" "TAIR-GO" "10" "0" "1" "0" "fatty acid metabolism" "TAIR-GO" "10" "9.5740509319945e-08" "1" "0.0210344316250160" "iron ion homeostasis" "TAIR-GO" "10" "0" "1" "0" "toxin catabolism" "TAIR-GO" "10" "3.8041339115211e-09" "5" "1.55908237384932e-06" "jasmonic acid biosynthesis" "AraCyc" "10" "6.08759677983765e-12" "1" "0.00383175070881756" "lipoxygenase pathway" "AraCyc" "10" "5.27390111486199e-14" "1" "0.00168465496989514" "Ascorbate and aldarate metabolism" "KEGG" "10" "3.85371459299894e-07" "1" "0.0575310634430882" "Fluorene degradation" "KEGG" "10" "2.41627144403464e-09" "1" "0.0222448787690672" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "1.14366133379761e-08" "1" "0.0282414634134839" "fatty acid modulation" "LitPath" "10" "1.40685230398857e-12" "1" "0.00141193234889066" "flavonol biosynthesis" "AraCyc" "9" "8.18373236994463e-13" "3" "2.59586316623728e-06" "monoterpene biosynthesis" "AraCyc" "9" "3.08473409366011e-17" "1" "7.87952691166878e-05" "plant monoterpene biosynthesis" "AraCyc" "9" "1.47411132078032e-19" "1" "2.63487154624802e-05" "storage protein" "FunCat" "8" "7.21930693715313e-13" "2" "1.27927894130747e-05" "flavonoid, anthocyanin, and proanthocyanidin biosynthesis" "LitPath" "8" "0.0014753175264762" "2" "0.0067190052746555" "proanthocyanidin biosynthesis" "LitPath" "8" "0.0014753175264762" "2" "0.0067190052746555" "pentacyclic triterpenoid biosynthesis" "TAIR-GO" "7" "2.17530994883137e-08" "1" "0.00215307171163213" "Biosynthesis of steroids" "KEGG" "7" "0.0158386714176476" "1" "0.161649441103954" "triterpene biosynthesis" "LitPath" "7" "0.000891161244132844" "1" "0.05254278710019" "STRESS DATA SET" "quantDE" "0.9335109" "maxDE" "6.366927" "STRESS DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "28" "5.96242472813782e-22" "8" "1.6449481674653e-07" "Methane metabolism" "KEGG" "18" "3.88027463902054e-15" "7" "4.67479953375559e-07" "Phenylalanine metabolism" "KEGG" "18" "1.20182806674864e-12" "7" "8.1680261718072e-07" "Prostaglandin and leukotriene metabolism" "KEGG" "18" "8.46873972219479e-19" "7" "8.13848499546394e-08" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "14" "6.8412542265622e-07" "2" "0.0966595460665637" "detoxification" "FunCat" "12" "0" "2" "0" "Intermediary Carbon Metabolism" "BioPath" "10" "0" "1" "0" "fatty acid metabolism" "TAIR-GO" "10" "2.68366272449078e-14" "1" "0.000920167637628931" "acetyl-CoA assimilation" "AraCyc" "10" "3.99411699361534e-10" "1" "0.00533267961297369" "glyoxylate cycle" "AraCyc" "10" "4.18932781616118e-11" "1" "0.0027695812088346" "leucine biosynthesis" "AraCyc" "10" "7.43830508054501e-15" "1" "0.00133219560261215" "serine-isocitrate lyase pathway" "AraCyc" "10" "7.81473938892225e-09" "1" "0.0103704644371091" "TCA cycle -- aerobic respiration" "AraCyc" "10" "4.9371713420452e-09" "1" "0.0112784930741462" "TCA cycle variation VII" "AraCyc" "10" "4.66508981951738e-07" "1" "0.0240646168486826" "TCA cycle variation VIII" "AraCyc" "10" "1.21077177217770e-08" "1" "0.0122206789954564" "C-compound and carbohydrate glyoxylate cycle " "FunCat" "10" "5.67026928172644e-21" "1" "7.3955992047833e-05" "detoxification involving cytochrome P450 " "FunCat" "10" "1.76999761356108e-18" "1" "0.00158369451302939" "glyoxylate cycle" "FunCat" "10" "5.67026928172644e-21" "1" "7.3955992047833e-05" "tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)" "FunCat" "10" "6.7497329297548e-05" "1" "0.0929729219015744" "Ascorbate and aldarate metabolism" "KEGG" "10" "7.0274262915605e-08" "1" "0.0218288097267925" "Citrate cycle (TCA cycle)" "KEGG" "10" "1.29631010918731e-06" "1" "0.0544280987621146" "Fluorene degradation" "KEGG" "10" "4.05552425811188e-10" "1" "0.00809516044684807" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "1.95983322660153e-09" "1" "0.0103642559345588" "Glyoxylate and dicarboxylate metabolism" "KEGG" "10" "4.81376692372862e-08" "1" "0.027032773788379" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "10" "1.63145318644485e-09" "1" "0.0142301053670875" "fatty acid modulation" "LitPath" "10" "4.73189340273458e-27" "1" "4.34440722735586e-06" "storage protein" "FunCat" "8" "2.69688068404268e-16" "2" "1.10468992029791e-06" "HORMONE DATA SET" "quantDE" "1.20461" "maxDE" "2.6703616" "HORMONE DATA SET" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "42" "1.47735550123668e-31" "7" "3.42977024820417e-06" "core phenylpropanoid metabolism" "BioPath" "20" "8.798929342362e-15" "2" "0.00219160969480616" "Phenylpropanoid Metabolism" "BioPath" "20" "2.72440257798633e-05" "2" "0.0804571638247246" "response to UV" "TAIR-GO" "20" "3.85131186325328e-22" "2" "0.000121044059955658" "Ascorbate and aldarate metabolism" "KEGG" "20" "6.51976088690294e-16" "2" "0.00170207240202675" "Fluorene degradation" "KEGG" "20" "1.87366279721079e-20" "2" "0.000360199144571804" "gamma-Hexachlorocyclohexane degradation" "KEGG" "20" "4.66312430106334e-19" "2" "0.000531101771278095" "Phenylpropanoid pathway" "LitPath" "20" "0.0346357588660388" "2" "0.316094256500969" "monoterpenoid biosynthesis" "TAIR-GO" "19" "6.78514713614435e-31" "2" "1.77066575332363e-06" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "19" "2.47980920980199e-06" "2" "0.0379470379779499" "monoterpene biosynthesis" "LitPath" "19" "2.67260495386563e-17" "2" "0.000126874365400540" "terpenoid metabolism" "LitPath" "19" "2.71042236394056e-06" "2" "0.0412217605285191" "biogenesis of cell wall" "FunCat" "16" "6.75839115602324e-10" "2" "0.00963243033587213" "glycolysis and gluconeogenesis" "FunCat" "16" "3.35890581072409e-05" "3" "0.00817546463243701" "Biosynthesis of steroids" "KEGG" "16" "1.0354225071739e-06" "2" "0.00975652494894922" "Miscellaneous acyl lipid metabolism" "AcylLipid" "14" "1.03244210894253e-05" "7" "2.39127109117244e-05" "Methane metabolism" "KEGG" "12" "1.53288453471502e-06" "4" "0.00100878889024692" "Phenylalanine metabolism" "KEGG" "12" "4.59763252988863e-05" "4" "0.00139415866143040" "Prostaglandin and leukotriene metabolism" "KEGG" "12" "8.4783153004275e-09" "4" "0.000364331416257212" "Starch and sucrose metabolism" "KEGG" "12" "0.00158675845514494" "2" "0.0357743058475943" "detoxification" "FunCat" "11" "0" "2" "0" "detoxification involving cytochrome P450 " "FunCat" "11" "1.69933288210489e-17" "2" "6.45343587893274e-05" "Carotenoid biosynthesis" "BioPath" "10" "2.01111149669629e-10" "1" "0.00181890057669479" "Glutathione metabolism" "BioPath" "10" "0.000481198966576454" "1" "0.0633123252690067" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "10" "0.0147490782907067" "1" "0.0874712322930104" "UDP-carbohydrate metabolism" "BioPath" "10" "5.6498971150133e-09" "2" "0.000258934030722111" "carotene biosynthesis" "TAIR-GO" "10" "8.39476866323623e-16" "1" "0.000186054956800331" "fatty acid metabolism" "TAIR-GO" "10" "1.65157020792760e-06" "1" "0.0167562533468316" "glucosinolate biosynthesis" "TAIR-GO" "10" "2.67803211969741e-10" "1" "0.00169560646368124" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "phenylpropanoid metabolism" "TAIR-GO" "10" "8.49263312578369e-12" "1" "0.000917060749015307" "photosynthesis" "TAIR-GO" "10" "9.15253815742827e-08" "1" "0.0108672941540269" "photosynthesis light harvesting" "TAIR-GO" "10" "6.96595361198117e-12" "1" "0.00169560646368124" "ascorbate glutathione cycle" "AraCyc" "10" "2.70066698935943e-08" "1" "0.0112709728332047" "carotenoid biosynthesis" "AraCyc" "10" "1.92090302574529e-08" "1" "0.00439449450993366" "colanic acid building blocks biosynthesis" "AraCyc" "10" "0.000187079416802654" "2" "0.0191169592644035" "flavonoid biosynthesis" "AraCyc" "10" "3.9292975359501e-07" "1" "0.0307078375542803" "formylTHF biosynthesis" "AraCyc" "10" "9.33346672514288e-09" "1" "0.0141855996933415" "glucose and glucose-1-phosphate degradation" "AraCyc" "10" "9.65794689497145e-11" "2" "0.00026767653638417" "glucosinolate biosynthesis from homomethionine" "AraCyc" "10" "2.1104600242044e-11" "1" "0.00100888996885948" "glucosinolate biosynthesis from phenylalanine" "AraCyc" "10" "1.45680654305269e-12" "1" "0.000609298324819819" "lactose degradation IV" "AraCyc" "10" "1.54268734030754e-14" "2" "3.41945775084279e-05" "lignin biosynthesis" "AraCyc" "10" "0.000296881069022832" "1" "0.0742391960673736" "photorespiration" "AraCyc" "10" "5.87590989521332e-07" "1" "0.0469246675559126" "suberin biosynthesis" "AraCyc" "10" "7.41469650688622e-07" "1" "0.0141855996933415" "sucrose biosynthesis" "AraCyc" "10" "1.25229763050543e-07" "2" "0.00101493446556898" "trehalose biosynthesis I" "AraCyc" "10" "0.00264610827863894" "2" "0.0421262537333230" "trehalose biosynthesis II" "AraCyc" "10" "0.000173729281392792" "2" "0.0173489881934977" "trehalose biosynthesis III" "AraCyc" "10" "1.65277690383297e-06" "2" "0.00405417730721763" "biogenesis of chloroplast" "FunCat" "10" "0.000860829315599736" "1" "0.0677793569397081" "biosynthesis of phenylpropanoids" "FunCat" "10" "5.65851159878886e-07" "1" "0.0232916673893527" "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" "10" "5.65851159878886e-07" "1" "0.0232916673893527" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "Glutamate metabolism" "KEGG" "10" "0.000560605990132579" "1" "0.0652201649898212" "Glutathione metabolism" "KEGG" "10" "0.000136289576109438" "1" "0.0625630773304485" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "10" "1.44409071256995e-05" "1" "0.232089875014582" "carotenid biosynthesis" "LitPath" "10" "0.000378937641514546" "1" "0.0284351102070104" "Carotenoid and abscisic acid metabolism" "LitPath" "10" "0.0181532837440396" "1" "0.0937213295262153" "fatty acid modulation" "LitPath" "10" "8.68018529243855e-12" "1" "0.000590839382920397" "flavonoid, anthocyanin, and proanthocyanidin biosynthesis" "LitPath" "10" "0.000313393187306414" "1" "0.0284351102070104" "general phenylpropanoid pathway" "LitPath" "10" "0" "1" "0" "proanthocyanidin biosynthesis" "LitPath" "10" "0.000313393187306414" "1" "0.0284351102070104" "monoterpene biosynthesis" "AraCyc" "9" "1.18327948085621e-12" "1" "0.000306645590375351" "plant monoterpene biosynthesis" "AraCyc" "9" "6.08438613103919e-15" "1" "0.000102885460377304" "secondary metabolism" "FunCat" "8" "0.000522417144303141" "2" "0.00805738258245411" "MUTANT DATA SET" "quantDE" "3.098943" "maxDE" "5.80371357" "MUTANT DATA SET" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "16" "4.33319244333444e-13" "3" "0.00201558971333440" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "14" "1.28627431104711e-13" "3" "0.000323894697643517" "mono-/sesqui-/di-terpene biosynthesis" "LitPath" "13" "1.22171123662511e-09" "2" "0.0026700615327679" "terpenoid metabolism" "LitPath" "13" "1.31673239253292e-09" "2" "0.00293287103393711" "detoxification" "FunCat" "11" "0" "2" "0" "detoxification involving cytochrome P450 " "FunCat" "11" "2.40622719175588e-24" "2" "3.62093924531222e-06" "Glucosyltransferases for benzoic acids" "BioPath" "10" "4.38851282501837e-15" "1" "0.00013239930464379" "Phenylpropanoid Metabolism" "BioPath" "10" "7.7798802471421e-06" "1" "0.0230054427992564" "fatty acid metabolism" "TAIR-GO" "10" "1.04674763684233e-16" "1" "0.000155787263144940" "flavonol biosynthesis" "AraCyc" "10" "1.29043996289828e-16" "1" "0.00274276598741562" "Ascorbate and aldarate metabolism" "KEGG" "10" "3.63679505423650e-12" "1" "0.00343710027031513" "Fluorene degradation" "KEGG" "10" "1.60046591772549e-14" "1" "0.00122797104915056" "gamma-Hexachlorocyclohexane degradation" "KEGG" "10" "8.27686829205362e-14" "1" "0.00158398719185473" "fatty acid modulation" "LitPath" "10" "6.44263723941175e-18" "1" "9.12325517744731e-05" "monoterpenoid biosynthesis" "TAIR-GO" "9" "7.36099052291728e-22" "1" "3.11574526289879e-06" "monoterpene biosynthesis" "AraCyc" "9" "3.35542958320005e-19" "1" "4.50635939720551e-05" "plant monoterpene biosynthesis" "AraCyc" "9" "1.58128677339900e-21" "1" "1.50564088357030e-05" "monoterpene biosynthesis" "LitPath" "9" "3.08578765324372e-11" "1" "0.000898909246926156" "Cell Wall Carbohydrate Metabolism" "BioPath" "8" "0.00564790327760157" "1" "0.0798073209953499" "pectin metabolism" "BioPath" "8" "4.09202921334897e-07" "1" "0.0174566536615262" "C-compound and carbohydrate metabolism" "FunCat" "8" "0.00554211900914154" "1" "0.172443556043533"