"Pathway" "Pathway.source" "V3" "V4" "V5" "V6" "IN ALL DATA SETS" "" "sum.of.scores" "sum.of.genes" "" "" "chlorophyll biosynthesis" "TAIR-GO" "275" "31" "" "" "chlorophyll biosynthesis" "LitPath" "259" "29" "" "" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "202" "34" "" "" "cuticle biosynthesis" "TAIR-GO" "109" "17" "" "" "wax biosynthesis" "TAIR-GO" "102" "13" "" "" "brassinosteroid biosynthesis" "BioPath" "102" "11" "" "" "Ascorbate and aldarate metabolism" "KEGG" "82" "10" "" "" "starch biosynthesis" "AraCyc" "75" "9" "" "" "starch biosynthesis" "TAIR-GO" "74" "9" "" "" "cellulose biosynthesis" "TAIR-GO" "74" "13" "" "" "Fluorene degradation" "KEGG" "56" "6" "" "" "epicuticular wax biosynthesis" "AraCyc" "56" "7" "" "" "biosynthesis of extracellular lipids" "LitPath" "36" "4" "" "" "ORGAN DATA SET" "quantDE" "5.436415" "maxDE" "6.5480235" "ORGAN DATA SET" "Photosystems " "BioPath" "327" "1.27439388888126e-116" "50" "1.68721443748141e-22" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "140" "1.13244951971977e-10" "19" "0.000587863236888424" "Photosynthesis" "KEGG" "135" "1.92596568601902e-127" "24" "2.40697506167791e-28" "Photosystem I" "BioPath" "131" "2.10879199925225e-31" "22" "9.75570780880974e-09" "additional photosystem II components" "BioPath" "130" "1.56838695446584e-45" "19" "5.29272503168382e-10" "biogenesis of chloroplast" "FunCat" "125" "2.3398159153407e-47" "19" "3.35535286239206e-10" "photosynthesis" "FunCat" "124" "9.04971401533542e-69" "19" "2.5081761351272e-13" "Chlorophyll a/b binding proteins" "BioPath" "108" "2.05954081277726e-62" "13" "2.66004888809906e-10" "transport " "FunCat" "99" "0" "16" "0" "glycolysis and gluconeogenesis" "FunCat" "85" "1.00659855335288e-08" "12" "0.0347485106548202" "photosystem I" "TAIR-GO" "77" "0" "9" "0" "Photosystem II" "BioPath" "73" "6.54194912854575e-11" "10" "0.00277466214548425" "Carbon fixation" "KEGG" "72" "2.23440414997929e-21" "10" "0.000101549987843604" "transport facilitation" "FunCat" "65" "0" "10" "0" "photosystem II" "TAIR-GO" "61" "0" "7" "0" "chlorophyll binding" "TAIR-GO" "52" "1.12313443676891e-24" "6" "8.77772686990957e-05" "Biosynthesis of steroids" "KEGG" "49" "5.69391153657721e-09" "6" "0.00361570992297249" "Glycolysis / Gluconeogenesis" "KEGG" "48" "1.39920994956701e-06" "7" "0.0192360993690643" "Carotenoid and abscisic acid metabolism" "LitPath" "48" "5.4972323327943e-22" "6" "0.000174018467435423" "Carotenoid biosynthesis" "BioPath" "44" "1.08488329463773e-16" "5" "0.000542059118686346" "carotenoid biosynthesis" "AraCyc" "44" "6.93503061525577e-24" "5" "2.72487253771387e-05" "carotenid biosynthesis" "LitPath" "44" "4.06513344482483e-29" "5" "1.91140417873665e-05" "light harvesting complex" "BioPath" "42" "2.51183532694325e-33" "5" "1.92450210043745e-06" "acetate fermentation" "AraCyc" "42" "0.000185486813502991" "6" "0.244640188441718" "fructose degradation (anaerobic)" "AraCyc" "42" "4.73770491611753e-05" "6" "0.189265413056529" "glycolysis IV" "AraCyc" "42" "5.67318680344069e-05" "6" "0.199910233324243" "sorbitol fermentation" "AraCyc" "42" "0.000217409357970434" "6" "0.221871597499902" "Calvin cycle" "AraCyc" "40" "4.38218329293536e-09" "7" "0.00605047641488551" "gluconeogenesis" "AraCyc" "40" "4.64657713971475e-06" "5" "0.116411105767734" "photorespiration" "AraCyc" "40" "5.754045574365e-14" "9" "0.000123727037572638" "lactose degradation IV" "AraCyc" "39" "0" "9" "0" "Ion channels" "KEGG" "39" "1.81030624065127e-17" "6" "0.00519141152584274" "Ligand-Receptor Interaction" "KEGG" "39" "5.38231787043749e-17" "6" "0.00649713632490695" "energy" "FunCat" "38" "0" "5" "0" "respiration" "FunCat" "38" "4.86416977646397e-17" "5" "0.000199184617850292" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "36" "0" "4" "0" "chlorophyll biosynthesis" "TAIR-GO" "35" "1.55711796071897e-07" "4" "0.0087145258118498" "channel / pore class transport" "FunCat" "35" "1.43481664343142e-25" "5" "0.000199184617850292" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "35" "1.95188029504168e-09" "6" "0.0135985902149565" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "34" "1.01035279387679e-08" "4" "0.0103965951624857" "photosynthesis" "TAIR-GO" "34" "8.47955119939106e-07" "5" "0.0104942781504541" "aerobic respiration" "FunCat" "34" "8.54051746499031e-14" "4" "0.00183106072111609" "chlorophyll and phytochromobilin metabolism" "LitPath" "33" "0.000258126045516280" "4" "0.0549172954132588" "photosystem I reaction center" "BioPath" "32" "5.10596784402508e-21" "7" "1.89788834206654e-07" "Pentose phosphate pathway" "KEGG" "32" "6.1274293279631e-08" "5" "0.00845610977396504" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "31" "0.0070525459567817" "4" "0.44626960068493" "protein biosynthesis" "TAIR-GO" "30" "0" "5" "0" "cysteine biosynthesis I" "AraCyc" "30" "0.000260497225092081" "8" "0.00186774272741335" "glycine biosynthesis I" "AraCyc" "30" "2.06662825616512e-06" "7" "0.0129451751432938" "superpathway of serine and glycine biosynthesis II" "AraCyc" "30" "9.00322099957138e-14" "7" "0.000113678471124459" "fatty acid metabolism" "TAIR-GO" "29" "0.0127773264667370" "4" "0.09454324352874" "Oxygen-evolving enhancer protein" "BioPath" "28" "1.59272392084733e-21" "4" "1.7386201569481e-05" "Thylakoid biogenesis and photosystem assembly" "BioPath" "28" "9.45233176703766e-10" "3" "0.00415081970305096" "Transcription (chloroplast)" "BioPath" "28" "2.22267333768798e-11" "3" "0.00415081970305096" "calmodulin binding" "TAIR-GO" "28" "2.16955553246814e-10" "4" "0.00608539434891152" "photorespiration" "TAIR-GO" "28" "9.59873462779346e-24" "4" "9.23295762997966e-06" "transcription initiation" "TAIR-GO" "28" "3.11206778847018e-12" "3" "0.0047980059065304" "serine-isocitrate lyase pathway" "AraCyc" "28" "0.0296836560748053" "4" "0.244702381961600" "Fructose and mannose metabolism" "KEGG" "28" "0.000666682517066829" "4" "0.0504139040349376" "Nitrogen metabolism" "KEGG" "28" "0.000349067411889255" "5" "0.00236762663721736" "Porphyrin and chlorophyll metabolism" "KEGG" "27" "1.58923450720702e-05" "4" "0.00580763736489076" "ATP synthase components" "BioPath" "26" "4.71222402659375e-08" "4" "0.00270783532260681" "photosystem I subunit precursor" "BioPath" "26" "0" "5" "0" "glyceraldehyde 3-phosphate degradation" "AraCyc" "24" "3.71906050134367e-06" "3" "0.0882335161373123" "glycerol degradation II" "AraCyc" "24" "0.0411275576851216" "3" "0.438491684653782" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "24" "0.000250946161337639" "3" "0.0416263942832921" "galactose degradation I" "AraCyc" "23" "4.21360186315215e-22" "6" "1.23641052007687e-08" "glucose conversion" "AraCyc" "23" "0.00495946454810977" "6" "0.0268747495099666" "UDP-glucose conversion" "AraCyc" "23" "0.00355997740000275" "6" "0.0236326750993461" "Ascorbate and aldarate metabolism" "KEGG" "23" "4.01577414006649e-05" "3" "0.0224993350771658" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "23" "7.1893714828868e-05" "3" "0.0346533814841346" "MEP (methylerythritol P) pathway, plastids" "LitPath" "23" "1.71776529427506e-12" "3" "0.00152903440479517" "acetyl-CoA assimilation" "AraCyc" "22" "0.0297171893556301" "3" "0.214767343669085" "glyoxylate cycle" "AraCyc" "22" "0.00259751856797172" "3" "0.0882335161373123" "dTDP-rhamnose biosynthesis" "AraCyc" "21" "0.0427016449937606" "5" "0.0984561694554152" "Glycine, serine and threonine metabolism" "KEGG" "21" "0.00309736767437609" "4" "0.0196992848997324" "Glutamate/glutamine from nitrogen fixation" "BioPath" "20" "0.0384874155868576" "2" "0.172383411808772" "mRNA processing in chloroplast" "BioPath" "20" "4.76025910160149e-06" "4" "0.00703413544687139" "Transcriptional regulators (chloroplast)" "BioPath" "20" "0" "2" "0" "chloroplast-nucleus signaling pathway" "TAIR-GO" "20" "2.08803020311530e-14" "2" "0.0009667112083981" "cuticle biosynthesis" "TAIR-GO" "20" "8.14472882096191e-06" "3" "0.0246682607099936" "cytochrome b6f complex" "TAIR-GO" "20" "2.19539559575623e-10" "2" "0.0153962303472467" "fatty acid biosynthesis" "TAIR-GO" "20" "0.02275824131492" "2" "0.180913549829095" "long-chain fatty acid metabolism" "TAIR-GO" "20" "0.00546869570537966" "3" "0.0801811445903158" "photosynthetic water oxidation" "TAIR-GO" "20" "0" "2" "0" "positive regulation of transcription" "TAIR-GO" "20" "6.96718344166357e-15" "2" "0.0009667112083981" "regulation of transcription" "TAIR-GO" "20" "0" "2" "0" "very-long-chain fatty acid metabolism" "TAIR-GO" "20" "0.000374879534629173" "3" "0.0537309513339945" "ammonia assimilation cycle" "AraCyc" "20" "2.73214344759074e-07" "2" "0.0248678654369463" "cysteine biosynthesis II" "AraCyc" "20" "3.07149542792118e-06" "7" "0.000163106062244628" "glucose and glucose-1-phosphate degradation" "AraCyc" "20" "4.55495939338321e-09" "3" "0.0128170215949315" "glutamine biosynthesis I" "AraCyc" "20" "2.57233593741094e-08" "2" "0.0115949941291667" "nitrate assimilation pathway" "AraCyc" "20" "1.05323074591990e-05" "2" "0.0335947540901327" "trehalose biosynthesis III" "AraCyc" "20" "0.0110492456964689" "3" "0.214767343669085" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "20" "0" "3" "0" "nitrogen and sulfur metabolism" "FunCat" "20" "0.00885531684388485" "2" "0.132949893106707" "Protein export" "KEGG" "20" "4.02224954843565e-05" "2" "0.134149760579300" "Synthesis of membrane lipids in plastids" "AcylLipid" "20" "3.76164052623653e-05" "2" "0.0541225836921064" "Fluorene degradation" "KEGG" "19" "1.69864069316116e-06" "2" "0.0260530939752406" "gamma-Hexachlorocyclohexane degradation" "KEGG" "19" "1.70314544839519e-05" "2" "0.0365064624484615" "chlorophyll biosynthesis" "LitPath" "19" "9.33534159830324e-07" "2" "0.0162216132212330" "carotene biosynthesis" "TAIR-GO" "18" "9.01181383418439e-13" "2" "0.0009667112083981" "hypersensitive response" "TAIR-GO" "18" "7.90803465692127e-07" "2" "0.0153962303472467" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "photosynthesis light harvesting" "TAIR-GO" "18" "5.22303059586082e-06" "2" "0.037110814645781" "photosynthesis light harvesting in photosystem I" "TAIR-GO" "18" "1.82098453720674e-07" "2" "0.0249935113685620" "photosynthetic electron transport" "TAIR-GO" "18" "2.13919085564657e-08" "2" "0.0153962303472467" "mannitol degradation" "AraCyc" "18" "0.000602859371004556" "3" "0.112334582572707" "sorbitol degradation" "AraCyc" "18" "0.00100858570257213" "3" "0.125367025096610" "starch biosynthesis" "AraCyc" "18" "0" "2" "0" "C-compound and carbohydrate utilization " "FunCat" "18" "0" "3" "0" "electron transport and membrane-associated energy conservation " "FunCat" "18" "3.58924192591272e-10" "2" "0.0163968261986346" "transported compounds (substrates)" "FunCat" "18" "0" "4" "0" "Glycerolipid metabolism" "KEGG" "18" "0.0411785495516432" "3" "0.055487890547014" "photosystem II assembly" "TAIR-GO" "17" "3.09285827406758e-15" "2" "0.0009667112083981" "photosystem II stabilization" "TAIR-GO" "17" "0" "2" "0" "starch biosynthesis" "TAIR-GO" "17" "0.000140962126125673" "2" "0.0249935113685620" "Streptomycin biosynthesis" "KEGG" "17" "8.23349027814835e-07" "2" "0.0174715928312951" "Early light-inducible proteins" "BioPath" "16" "9.44868695103657e-05" "2" "0.0348324165743272" "ATP synthesis coupled proton transport" "TAIR-GO" "16" "5.52576815059643e-07" "2" "0.00830203621742081" "carotenoid biosynthesis" "TAIR-GO" "16" "0.000651241833519497" "2" "0.037110814645781" "proton transport" "TAIR-GO" "16" "5.52576815059643e-07" "2" "0.00830203621742081" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "wax biosynthesis" "TAIR-GO" "16" "3.81008006256812e-05" "2" "0.0249935113685620" "epicuticular wax biosynthesis" "AraCyc" "16" "5.11467814853427e-14" "2" "0.000415979885579434" "jasmonic acid biosynthesis" "AraCyc" "16" "0.0347537778547808" "2" "0.147389816146170" "lipoxygenase pathway" "AraCyc" "16" "0.000431051849136272" "2" "0.05511716462574" "serine biosynthesis" "AraCyc" "16" "1.45257992856055e-09" "6" "1.23641052007687e-08" "sucrose biosynthesis" "AraCyc" "16" "0.0138615731238825" "3" "0.0574654254245788" "Chloroplastic protein turnover" "BioPath" "14" "0.00743291772581829" "2" "0.143945524102574" "Ferredoxin" "BioPath" "14" "0.000233099962679485" "3" "0.0124390950687937" "Sec (secretory) pathway" "BioPath" "14" "3.21914167975924e-10" "2" "0.0051548650330033" "photosystem II antenna complex" "TAIR-GO" "14" "2.44908821869454e-11" "2" "0.0009667112083981" "protein degradation " "FunCat" "13" "0.00385272062971702" "2" "0.118320492329338" "psbP family of thylakoid proteins" "BioPath" "12" "1.51726678249492e-06" "4" "9.46946989146986e-05" "cellulose biosynthesis" "TAIR-GO" "12" "0.0113706062817503" "2" "0.0876112681240062" "plastid large ribosomal subunit" "TAIR-GO" "12" "0" "2" "0" "primary cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "12" "1.88168974620422e-07" "2" "0.00358275011112438" "response to ethylene stimulus" "TAIR-GO" "12" "0.00272337297257175" "3" "0.0426124270717023" "4-hydroxyproline degradation" "AraCyc" "12" "0.000990182956697182" "2" "0.0436926823051397" "cyanate degradation" "AraCyc" "12" "2.48003091811612e-06" "2" "0.0678072075349825" "glycine degradation I" "AraCyc" "12" "5.23514072810393e-06" "3" "0.00287080553455452" "peptidoglycan biosynthesis" "AraCyc" "12" "3.63260778495999e-06" "2" "0.0175355121361490" "sucrose degradation III" "AraCyc" "12" "0.023988978745715" "2" "0.112689971276594" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "12" "0.000128886352973728" "2" "0.0115949941291667" "accessory proteins of photosynthetic electron transport " "FunCat" "12" "0" "2" "0" "electron / hydrogen transport " "FunCat" "12" "9.68837287029733e-07" "2" "0.00450869447083025" "brassinosteroid biosynthesis" "BioPath" "10" "0.000783073431501147" "1" "0.0349545226373647" "Delta-pH pathway" "BioPath" "10" "7.4498589285081e-05" "1" "0.0349545226373647" "FtsH protease (many homologues / subcellular localization ambiguous)" "BioPath" "10" "0" "1" "0" "Plastocyanin" "BioPath" "10" "8.19720705539113e-06" "1" "0.0125889487617581" "Regulatory enzymes" "BioPath" "10" "0.000783073431501147" "1" "0.0349545226373647" "cell differentiation" "TAIR-GO" "10" "5.4428473457451e-08" "2" "0.0009667112083981" "chloroplast ATP synthase complex" "TAIR-GO" "10" "1.39049426010320e-06" "1" "0.00982238694128846" "chloroplast thylakoid membrane protein import" "TAIR-GO" "10" "0.00126546203188790" "1" "0.051484726703014" "cysteine biosynthesis" "TAIR-GO" "10" "0.000163711890321234" "1" "0.0275337384070692" "cytochrome b6f complex assembly" "TAIR-GO" "10" "0" "1" "0" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "photoinhibition" "TAIR-GO" "10" "5.29473111172727e-05" "1" "0.0275337384070692" "photosynthesis light harvesting in photosystem II" "TAIR-GO" "10" "0.000983222356335119" "1" "0.0802731870267428" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "5.56729804873922e-09" "1" "0.00982238694128846" "photosystem II (sensu Viridiplantae)" "TAIR-GO" "10" "0.000229355072835952" "1" "0.051484726703014" "phytochromobilin biosynthesis" "TAIR-GO" "10" "0.000163711890321234" "1" "0.0275337384070692" "plastid organization and biogenesis" "TAIR-GO" "10" "3.47273511070638e-05" "1" "0.051484726703014" "protein binding" "TAIR-GO" "10" "0.000428405294757074" "1" "0.0802731870267428" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "response to jasmonic acid stimulus" "TAIR-GO" "10" "0.0296376491009831" "1" "0.147798926965662" "RNA binding" "TAIR-GO" "10" "0" "1" "0" "RNA processing" "TAIR-GO" "10" "0" "1" "0" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "xanthophyll cycle" "TAIR-GO" "10" "0" "1" "0" "xanthophyll metabolism" "TAIR-GO" "10" "0" "1" "0" "brassinosteroid biosynthesis II" "AraCyc" "10" "0.00793040237211495" "1" "0.225215012510233" "glycosylglyceride desaturation pathway" "AraCyc" "10" "0.000209568117280655" "1" "0.0303036433993884" "homomethionine biosynthesis" "AraCyc" "10" "0" "1" "0" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "10" "0.00106795691453945" "1" "0.0685428170628645" "leucine biosynthesis" "AraCyc" "10" "0.0259022455839541" "1" "0.339463889423742" "phospholipid desaturation pathway" "AraCyc" "10" "0.00321243433029533" "1" "0.0480323409981262" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "10" "1.76299479328981e-06" "1" "0.0480323409981262" "thiamine biosynthesis" "AraCyc" "10" "2.36437674698356e-05" "1" "0.0685428170628645" "xanthophyll cycle" "AraCyc" "10" "3.67511569987083e-08" "1" "0.00558981725032835" "biosynthesis of vitamins, cofactors, and prosthetic groups" "FunCat" "10" "0.0368234553118701" "2" "0.0560754868219811" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "10" "0.000357485957272439" "1" "0.0569497543442132" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "10" "3.51984430973008e-05" "1" "0.0258873611625624" "Androgen and estrogen metabolism" "KEGG" "10" "5.4945125533642e-05" "1" "0.0352018651938278" "Benzoate degradation via hydroxylation" "KEGG" "10" "0.00471357680030206" "1" "0.0691664674811359" "Peptidoglycan biosynthesis" "KEGG" "10" "2.18941764165087e-05" "1" "0.0177702691597088" "oxylipin pathway" "LitPath" "10" "9.42121280292052e-09" "1" "0.00410980923707865" "phytochromobilin biosynthesis" "LitPath" "10" "0.00294803048744474" "1" "0.0700069463885503" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "calcium ion transport" "TAIR-GO" "9" "3.79128557213137e-06" "1" "0.00982238694128846" "carbohydrate biosynthesis" "TAIR-GO" "9" "0" "1" "0" "cation transport" "TAIR-GO" "9" "4.1150220380741e-08" "1" "0.00982238694128846" "myo-inositol biosynthesis" "TAIR-GO" "9" "0" "1" "0" "sucrose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "1.05497621840328e-06" "1" "0.0159374919798262" "ion channels" "FunCat" "9" "0.0197225209106025" "1" "0.394394359435304" "Membrane Transport" "KEGG" "9" "0.0335683494572116" "1" "0.253564616430453" "Other ion-coupled transporters" "KEGG" "9" "0.00187496829441086" "1" "0.095798884314727" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "Tic apparatus" "BioPath" "8" "0.0162562507421220" "2" "0.0511882016739489" "fatty acid elongation" "TAIR-GO" "8" "0.0466191859276421" "1" "0.147798926965662" "photosynthetic electron transport in photosystem I" "TAIR-GO" "8" "0.000755059330840799" "1" "0.0275337384070692" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "response to high light intensity" "TAIR-GO" "8" "0.00104600347034578" "1" "0.0275337384070692" "proline degradation II" "AraCyc" "8" "0.0460521501228401" "1" "0.196865371196151" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "8" "2.4447270423115e-06" "1" "0.0117797983919479" "secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate " "FunCat" "8" "0" "1" "0" "N-Glycan biosynthesis" "KEGG" "8" "0.0479110803152028" "1" "0.187541229199800" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0" "STRESS DATA SET" "quantDE" "2.245786" "maxDE" "7.092637" "STRESS DATA SET" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "55" "7.26478287611666e-41" "9" "9.63723531812676e-07" "fatty acid metabolism" "TAIR-GO" "44" "9.29299660039971e-37" "6" "2.58566463585859e-07" "cuticle biosynthesis" "TAIR-GO" "41" "1.77051303502674e-54" "6" "5.14072601355414e-10" "long-chain fatty acid metabolism" "TAIR-GO" "35" "1.04050592551789e-34" "5" "4.36193636551432e-07" "very-long-chain fatty acid metabolism" "TAIR-GO" "35" "1.74584067292438e-38" "5" "1.81620716838475e-07" "wax biosynthesis" "TAIR-GO" "30" "4.23391495864734e-39" "4" "4.85949868635484e-08" "fatty acid elongation" "TAIR-GO" "23" "1.16627131610541e-29" "3" "4.47007118363787e-06" "atty acid elongation -- unsaturated" "AraCyc" "23" "9.44393559527138e-23" "4" "2.07968208637494e-06" "fatty acid biosynthesis -- initial steps" "AraCyc" "23" "4.09905924222091e-17" "4" "3.20326843771215e-05" "fatty acid elongation -- saturated" "AraCyc" "23" "7.71096344543459e-22" "4" "2.74801109517783e-06" "fatty acid elongation -- unsaturated" "AraCyc" "23" "5.40243559818815e-23" "4" "1.54628235931016e-06" "Photosystems " "BioPath" "16" "0.000214953928664708" "2" "0.0615055508275594" "acetyl-CoA assimilation" "AraCyc" "16" "1.91521903142885e-09" "2" "0.00633281990941887" "epicuticular wax biosynthesis" "AraCyc" "16" "9.2873078276021e-27" "2" "1.63126814847355e-06" "glyoxylate cycle" "AraCyc" "16" "7.13487797453094e-11" "2" "0.00243908396678512" "serine-isocitrate lyase pathway" "AraCyc" "16" "1.28585676339453e-07" "2" "0.0162482375858857" "TCA cycle -- aerobic respiration" "AraCyc" "16" "6.79067480957043e-08" "2" "0.0182595051143002" "TCA cycle variation IV" "AraCyc" "16" "4.8675434764698e-08" "2" "0.0162482375858857" "TCA cycle variation VII" "AraCyc" "16" "3.01411944432023e-05" "2" "0.0509283572388767" "TCA cycle variation VIII" "AraCyc" "16" "2.35357727787768e-07" "2" "0.0204037807152554" "biogenesis of cell wall" "FunCat" "12" "1.07779086381418e-08" "2" "0.00963243033587213" "isoprenoid biosynthesis " "FunCat" "12" "1.37501534229055e-07" "3" "0.000747121023364839" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "12" "2.89045245619223e-08" "3" "0.000435129726452783" "Chlorophyll a/b binding proteins" "BioPath" "10" "1.83073167167953e-07" "1" "0.0112506432764305" "Chlorophyll biosynthesis and breakdown" "BioPath" "10" "4.30050074569441e-05" "1" "0.0322783109723853" "core phenylpropanoid metabolism" "BioPath" "10" "6.99174129536644e-05" "1" "0.0568483680860616" "Delta-pH pathway" "BioPath" "10" "6.31258407289664e-17" "1" "0.000214777140553479" "light harvesting complex" "BioPath" "10" "4.73307066505489e-13" "1" "0.00105696826860978" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "10" "1.97250905940799e-09" "1" "0.00529670358135539" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "10" "0.0390496208837638" "1" "0.160630170180703" "Transcription (chloroplast)" "BioPath" "10" "6.5333259736565e-12" "1" "0.00147194999670790" "chlorophyll catabolism" "TAIR-GO" "10" "5.69557224271683e-12" "1" "0.00113986307122597" "hypersensitive response" "TAIR-GO" "10" "4.28466927073797e-09" "1" "0.00548745099178927" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "transcription initiation" "TAIR-GO" "10" "5.05812248378249e-08" "1" "0.00998857238682273" "biosynthesis of phenylpropanoids" "FunCat" "10" "6.944287793789e-09" "1" "0.0232916673893527" "biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine" "FunCat" "10" "6.944287793789e-09" "1" "0.0232916673893527" "Folding, Sorting and Degradation" "KEGG" "10" "0.000266444239313048" "1" "0.0622662306013344" "Pentose phosphate pathway" "KEGG" "10" "2.50211054586833e-08" "2" "0.000452001822210599" "Protein export" "KEGG" "10" "4.1734615498355e-10" "1" "0.00529872409765922" "chlorophyll and phytochromobilin metabolism" "LitPath" "10" "1.18737151535474e-05" "1" "0.0129367795096452" "chlorophyll catabolism" "LitPath" "10" "1.93305324369001e-16" "1" "7.80453186101951e-05" "Phenylpropanoid pathway" "LitPath" "10" "0.000346174957641228" "1" "0.0686451048804644" "Ascorbate and aldarate metabolism" "KEGG" "9" "4.95562786274835e-08" "1" "0.00395031394704018" "Fluorene degradation" "KEGG" "9" "4.34176690502491e-10" "1" "0.00141373708303226" "gamma-Hexachlorocyclohexane degradation" "KEGG" "9" "1.83744580050216e-09" "1" "0.00182298775734998" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "9" "3.51231898085897e-05" "1" "0.0542115735566065" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "starch biosynthesis" "TAIR-GO" "8" "5.52534313282866e-06" "1" "0.00758626940698705" "glucose and glucose-1-phosphate degradation" "AraCyc" "8" "2.06204275448298e-07" "1" "0.0101447106122569" "lactose degradation IV" "AraCyc" "8" "2.34276003702602e-10" "1" "0.00285986112872358" "starch biosynthesis" "AraCyc" "8" "0" "1" "0" "trehalose biosynthesis II" "AraCyc" "8" "0.0107237471578777" "1" "0.136753341748970" "trehalose biosynthesis III" "AraCyc" "8" "0.000365598289524316" "1" "0.0558475729175843" "glycolysis and gluconeogenesis" "FunCat" "8" "0.00963344041149965" "1" "0.199057835215221" "Galactose metabolism" "KEGG" "8" "1.37803254570817e-06" "1" "0.00604179842698011" "Glycolysis / Gluconeogenesis" "KEGG" "8" "0.000648662255343984" "1" "0.0343287808283310" "Starch and sucrose metabolism" "KEGG" "8" "0.000838793628806568" "1" "0.0327016711169908" "Streptomycin biosynthesis" "KEGG" "8" "1.08660067459603e-09" "1" "0.00105489397076477" "starch degradation" "AraCyc" "7" "4.61171765410174e-05" "1" "0.0134491765786536" "HORMONE DATA SET" "quantDE" "1.453013" "maxDE" "3.5857482" "HORMONE DATA SET" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "51" "6.70480282231699e-33" "9" "3.97332468572771e-07" "fatty acid metabolism" "TAIR-GO" "33" "1.79106179068345e-27" "5" "2.38810274257025e-06" "cuticle biosynthesis" "TAIR-GO" "24" "2.78634459565798e-28" "4" "8.35986368477992e-07" "long-chain fatty acid metabolism" "TAIR-GO" "24" "7.29902865470377e-23" "4" "6.13815627373607e-06" "very-long-chain fatty acid metabolism" "TAIR-GO" "24" "2.82771828681782e-25" "4" "3.05378620233823e-06" "wax biosynthesis" "TAIR-GO" "24" "1.61840742099973e-31" "3" "2.53606693797427e-06" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "22" "8.75783079412605e-06" "3" "0.048719331208185" "Cell Wall Carbohydrate Metabolism" "BioPath" "16" "1.10303405798952e-05" "4" "0.0114563124366558" "acetyl-CoA assimilation" "AraCyc" "16" "1.06146244625344e-11" "2" "0.00279022376229644" "atty acid elongation -- unsaturated" "AraCyc" "16" "3.46035507121719e-16" "4" "4.74339417630044e-07" "cellulose biosynthesis" "AraCyc" "16" "2.58347907740032e-10" "3" "0.00058460872819419" "epicuticular wax biosynthesis" "AraCyc" "16" "2.73094046166166e-29" "2" "6.73407410967923e-07" "fatty acid biosynthesis -- initial steps" "AraCyc" "16" "2.47435809797126e-12" "4" "7.54887624744378e-06" "fatty acid elongation -- saturated" "AraCyc" "16" "1.43515862132793e-15" "4" "6.2835418220399e-07" "fatty acid elongation -- unsaturated" "AraCyc" "16" "2.37275049104311e-16" "4" "3.51792864561274e-07" "glyoxylate cycle" "AraCyc" "16" "3.44706781391719e-13" "2" "0.00105332910286794" "serine-isocitrate lyase pathway" "AraCyc" "16" "9.0286312179266e-10" "2" "0.00736708324335527" "TCA cycle -- aerobic respiration" "AraCyc" "16" "4.57447974598957e-10" "2" "0.00831533388828302" "TCA cycle variation IV" "AraCyc" "16" "3.21169437849464e-10" "2" "0.00736708324335527" "TCA cycle variation VII" "AraCyc" "16" "3.4014653471416e-07" "2" "0.0243748793659727" "TCA cycle variation VIII" "AraCyc" "16" "1.7224513580944e-09" "2" "0.00933252153474843" "cellulose biosynthesis" "BioPath" "12" "3.43456160137596e-12" "2" "0.000902953784035903" "cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "12" "1.25998127245442e-08" "2" "0.00324505548115575" "cellulose biosynthesis" "TAIR-GO" "12" "5.3592975672826e-12" "2" "0.000713063627655244" "primary cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "12" "3.33440978435842e-18" "2" "1.87898547769821e-05" "isoprenoid biosynthesis " "FunCat" "12" "8.64376725569349e-13" "3" "1.55792824520556e-05" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "12" "1.57372565540171e-13" "3" "8.833341242156e-06" "Leaf Glycerolipid Biosynthesis" "BioPath" "10" "0.00243458767785221" "1" "0.183621781094025" "Leaf Glycerolipid Biosynthesis in cytosol / ER" "BioPath" "10" "5.68900786869923e-11" "1" "0.00761139997021846" "phosphatidylcholine biosynthesis" "TAIR-GO" "10" "0" "1" "0" "abscisic acid mediated signaling" "TAIR-GO" "9" "6.85061783883015e-11" "1" "0.00171012781735923" "Ascorbate and aldarate metabolism" "KEGG" "9" "1.61201407996880e-10" "1" "0.00081535070061191" "Benzoate degradation via CoA ligation" "KEGG" "9" "2.02953914763374e-07" "1" "0.0100724444490646" "Fluorene degradation" "KEGG" "9" "1.21610747995048e-12" "1" "0.000287832708898011" "gamma-Hexachlorocyclohexane degradation" "KEGG" "9" "5.34280819334074e-12" "1" "0.000372172668941069" "Inositol phosphate metabolism" "KEGG" "9" "4.98901987321793e-07" "1" "0.0118933695820721" "Nicotinate and nicotinamide metabolism" "KEGG" "9" "5.46684460704721e-08" "1" "0.00859378913870004" "Stilbene, coumarine and lignin biosynthesis" "KEGG" "9" "1.72962429438529e-07" "1" "0.0123700897198785" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "fatty acid elongation" "TAIR-GO" "8" "1.97362884895956e-08" "1" "0.00579279463774812" "MUTANT DATA SET" "quantDE" "1.767732" "maxDE" "5.967951631" "MUTANT DATA SET" "Photosystems " "BioPath" "339" "3.47199298897429e-72" "47" "8.45428894509506e-13" "C-compound and carbohydrate metabolism" "FunCat" "221" "3.01145480362059e-05" "38" "0.0372002329091155" "Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)" "BioPath" "208" "7.32711046770818e-15" "26" "0.000178681929768882" "biogenesis of chloroplast" "FunCat" "161" "4.25900549794526e-43" "24" "1.57216089311677e-09" "additional photosystem II components" "BioPath" "144" "1.18990188991396e-34" "19" "4.30230642732443e-07" "photosynthesis" "FunCat" "142" "8.56847686595244e-55" "21" "1.41426061353791e-10" "transport " "FunCat" "141" "0" "23" "0" "Photosynthesis" "KEGG" "127" "1.00423012772404e-72" "20" "3.79177206808552e-14" "glycolysis and gluconeogenesis" "FunCat" "121" "4.09475739572984e-06" "20" "0.0183691656410025" "Chlorophyll a/b binding proteins" "BioPath" "118" "2.6809543297029e-54" "15" "1.29519811729391e-10" "Photosystem I" "BioPath" "111" "1.04726910210336e-07" "17" "0.00311372428063545" "chlorophyll biosynthesis" "AraCyc" "106" "1.05172892274282e-25" "13" "0.00322771055112228" "Carbon fixation" "KEGG" "106" "3.44131656131565e-19" "17" "2.68028930521530e-05" "Chlorophyll biosynthesis and breakdown" "BioPath" "103" "3.65577363226681e-13" "12" "0.00125862388168906" "transport facilitation" "FunCat" "101" "0" "16" "0" "chlorophyll and phytochromobilin metabolism" "LitPath" "97" "3.46003480198387e-21" "11" "0.000127533528617569" "Biosynthesis of steroids" "KEGG" "95" "2.24687969316393e-14" "10" "0.00364892607587766" "fatty acid biosynthesis" "TAIR-GO" "86" "3.41721768975167e-40" "10" "6.44522300082529e-07" "chlorophyll biosynthesis" "TAIR-GO" "85" "9.25943738780195e-35" "9" "3.21640256436905e-06" "Porphyrin and chlorophyll metabolism" "KEGG" "83" "3.89749391181521e-26" "10" "1.94666658481483e-05" "Glycolysis / Gluconeogenesis" "KEGG" "78" "2.86674095915638e-05" "14" "0.00618084342336657" "Methionin/SAM/ethylene metabolism from cysteine and aspartate" "BioPath" "76" "3.47948783204626e-11" "9" "0.0171612372571125" "Selenoamino acid metabolism" "KEGG" "76" "1.68529554569853e-20" "9" "0.000334976686611963" "triterpene, sterol, and brassinosteroid metabolism" "LitPath" "72" "0.00419672428185831" "8" "0.374269563407716" "Photosystem II" "BioPath" "65" "0.0252192310935264" "8" "0.177255378432378" "Nitrogen metabolism" "KEGG" "65" "1.07249681123560e-09" "9" "0.000602220068850056" "Calvin cycle" "AraCyc" "64" "8.24066014535267e-14" "12" "0.000381589289541448" "Fatty acid elongation and wax and cutin metabolism" "AcylLipid" "61" "1.45543035845318e-08" "10" "0.0165426564523014" "sterol biosynthesis" "BioPath" "60" "0.00037904412445361" "6" "0.119948344108883" "acetate fermentation" "AraCyc" "60" "0.000468242517032025" "12" "0.0694105593319967" "photorespiration" "AraCyc" "60" "1.64734081515521e-19" "11" "0.000461312199950398" "Methionine metabolism" "KEGG" "60" "1.84614453308003e-22" "7" "0.000323818973036326" "Synthesis of fatty acids in plastids" "AcylLipid" "60" "4.35959858914234e-10" "9" "0.00246650793454581" "fructose degradation (anaerobic)" "AraCyc" "58" "0.000289975383169664" "11" "0.0808887288164373" "gluconeogenesis" "AraCyc" "58" "2.00837569054665e-06" "9" "0.0438919664389133" "glycolysis IV" "AraCyc" "58" "0.000356395457282632" "11" "0.0889884724791612" "sorbitol fermentation" "AraCyc" "58" "0.00160795919084401" "11" "0.106638613216107" "photosystem I" "TAIR-GO" "57" "0" "7" "0" "lactose degradation IV" "AraCyc" "57" "0" "14" "0" "fatty acid biosynthesis -- initial steps" "AraCyc" "54" "1.27113132636812e-10" "8" "0.0126892197243344" "lipid, fatty acid and isoprenoid biosynthesis " "FunCat" "54" "0.0184641388531836" "7" "0.239246335877373" "brassinosteroid biosynthesis" "LitPath" "52" "5.09379225796907e-09" "6" "0.00666872904951899" "sterol and brassinosteroid biosynthesis" "LitPath" "52" "1.49283658924277e-14" "6" "0.000663869176029325" "chlorophyll binding" "TAIR-GO" "50" "1.70686787936105e-14" "6" "0.00130606667188421" "sterol biosynthesis" "TAIR-GO" "50" "1.67664324778312e-06" "5" "0.0696279107815609" "Synthesis of membrane lipids in endomembrane system" "AcylLipid" "49" "0.000648141311216151" "6" "0.187201576592836" "chlorophyll biosynthesis" "LitPath" "49" "3.09249545938660e-21" "5" "0.000130910875200469" "ascorbic acid biosynthesis" "BioPath" "46" "4.26782705892328e-06" "6" "0.0437604320457111" "biosynthesis of proto- and siroheme" "AraCyc" "46" "0.00058306008054602" "7" "0.124780977284838" "respiration" "FunCat" "46" "5.06218800501463e-14" "7" "7.4029173552714e-05" "Pentose phosphate pathway" "KEGG" "46" "8.42178312004978e-06" "9" "0.00472525982274873" "ascorbate glutathione cycle" "AraCyc" "44" "1.21608912150367e-14" "6" "0.00175918073064953" "glycerol degradation II" "AraCyc" "44" "0.00113815999515999" "8" "0.0950435953473198" "glycine biosynthesis I" "AraCyc" "43" "5.24365754157889e-07" "8" "0.0752738229276552" "response to light" "TAIR-GO" "42" "0.0109683911916345" "6" "0.325949773207979" "aerobic respiration" "FunCat" "42" "2.20599515718832e-11" "6" "0.00061343661789482" "ATP synthesis" "KEGG" "42" "8.65044403431822e-05" "8" "0.0125036695357567" "Carotenoid and abscisic acid metabolism" "LitPath" "42" "2.55568140020330e-06" "5" "0.0265252624178289" "electron transport" "TAIR-GO" "41" "2.18561694949147e-05" "5" "0.0696279107815609" "photosystem II" "TAIR-GO" "41" "0" "5" "0" "Ascorbate and aldarate metabolism" "KEGG" "41" "4.04034333209374e-06" "5" "0.0289543910815284" "Glycine, serine and threonine metabolism" "KEGG" "41" "0.000321069847619236" "7" "0.0195143695842455" "IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis" "LitPath" "41" "7.73190086584653e-06" "5" "0.0208519671697403" "methionine degradation I" "AraCyc" "40" "1.46838307636401e-20" "5" "0.000466059054949184" "sterol biosynthesis" "AraCyc" "40" "4.24562089237784e-05" "4" "0.0906202468297445" "transported compounds (substrates)" "FunCat" "39" "0" "7" "0" "light harvesting complex" "BioPath" "38" "4.87426505877822e-20" "5" "1.89196611351727e-05" "Carotenoid biosynthesis" "BioPath" "36" "7.00109219145064e-06" "4" "0.0227114855212754" "Cytochrome b6/f complex" "BioPath" "36" "1.7094595777229e-14" "4" "0.00823414026096787" "calmodulin binding" "TAIR-GO" "36" "5.38276739565625e-11" "4" "0.0352864394984892" "photosynthesis" "TAIR-GO" "36" "0.00161161986295098" "5" "0.0696279107815609" "carotenoid biosynthesis" "AraCyc" "36" "9.50260758788228e-10" "4" "0.00416266369751747" "Citrate cycle (TCA cycle)" "KEGG" "36" "0.037373718110534" "6" "0.0967804277839237" "Cysteine metabolism" "KEGG" "36" "0.000421555575012382" "4" "0.114560599019896" "Fatty acid biosynthesis (path 1)" "KEGG" "36" "5.18903833127141e-10" "4" "0.0311113523367118" "Sulfur metabolism" "KEGG" "36" "0.000474803420720148" "4" "0.0554343050805556" "carotenid biosynthesis" "LitPath" "36" "5.54900533152064e-10" "4" "0.00495327709341022" "cysteine biosynthesis I" "AraCyc" "35" "0.0295720241945601" "7" "0.0995960087749848" "galactose degradation I" "AraCyc" "35" "0" "9" "0" "Pathway for nuclear-encoded, thylakoid-localized proteins" "BioPath" "34" "0.000206392373553732" "4" "0.0477381751451462" "embryonic development" "TAIR-GO" "34" "0.0080161432797168" "4" "0.148960951058736" "photorespiration" "TAIR-GO" "34" "0" "5" "0" "unidimensional cell growth" "TAIR-GO" "34" "2.57184625398895e-05" "4" "0.0352864394984892" "superpathway of serine and glycine biosynthesis II" "AraCyc" "34" "7.15947058706576e-11" "7" "0.00335854749040396" "C-compound and carbohydrate utilization " "FunCat" "34" "0" "6" "0" "transport ATPases" "FunCat" "34" "0.00297729858479403" "6" "0.060043622260434" "glucose conversion" "AraCyc" "33" "0.00872984511002586" "8" "0.050773834495749" "wax biosynthesis" "TAIR-GO" "32" "4.53317838957793e-13" "4" "0.0012612550771422" "glyceraldehyde 3-phosphate degradation" "AraCyc" "32" "9.06609436884852e-06" "5" "0.0552783506354246" "assimilation of ammonia, metabolism of the glutamate group" "FunCat" "32" "0.00532801197611774" "4" "0.0779153922875701" "Cyanoamino acid metabolism" "KEGG" "31" "4.49287093137577e-06" "5" "0.0289543910815284" "Protein folding / chaperonins (chloroplast)" "BioPath" "30" "9.33126542561456e-05" "4" "0.0645828387769935" "brassinosteroid biosynthesis" "TAIR-GO" "30" "0.000813954097884138" "3" "0.0948997437501659" "steroid biosynthesis" "TAIR-GO" "30" "0.000813954097884138" "3" "0.0948997437501659" "formylTHF biosynthesis" "AraCyc" "30" "4.02814828798993e-07" "5" "0.0172995410565801" "UDP-glucose conversion" "AraCyc" "29" "0.0460934894868968" "7" "0.0995960087749848" "degradation " "FunCat" "29" "0.000428633631255059" "5" "0.063402497975186" "Protein folding and associated processing" "KEGG" "29" "0.000216109686741222" "4" "0.100949604722804" "Glutamate/glutamine from nitrogen fixation" "BioPath" "28" "0.0498160031416327" "3" "0.150877542487246" "carotene biosynthesis" "TAIR-GO" "28" "0" "3" "0" "porphyrin biosynthesis" "TAIR-GO" "28" "0.000199049523080385" "4" "0.0352864394984892" "nitrate assimilation pathway" "AraCyc" "28" "4.45849152564117e-06" "3" "0.0261797619009533" "C-compound, carbohydrate catabolism" "FunCat" "28" "0.0353202603150397" "6" "0.169892084299780" "energy" "FunCat" "28" "0" "4" "0" "chlorophyll and phyochromobilin biosynthesis" "LitPath" "28" "9.10450086289097e-06" "4" "0.0161587513001781" "Tryptophan metabolism" "KEGG" "27" "0.0188291501115295" "4" "0.230136243869359" "photosystem I subunit precursor" "BioPath" "26" "0" "5" "0" "photosystem II type I chlorophyll a /b binding protein" "BioPath" "26" "9.82863169223758e-13" "3" "0.000715549281442162" "atty acid elongation -- unsaturated" "AraCyc" "26" "0.000262343142596025" "5" "0.0227174629166978" "fatty acid elongation -- saturated" "AraCyc" "26" "0.00104492172925517" "5" "0.0291692850641991" "fatty acid elongation -- unsaturated" "AraCyc" "26" "0.000178648668679276" "5" "0.0172995410565801" "Ion channels" "KEGG" "26" "0.0127687960000059" "4" "0.523948027111957" "Ligand-Receptor Interaction" "KEGG" "26" "0.0181664893846044" "4" "0.56074504069793" "photosystem II type II chlorophyll a /b binding protein" "BioPath" "24" "1.41345759195513e-12" "3" "0.000715549281442162" "cuticle biosynthesis" "TAIR-GO" "24" "8.5512233093813e-05" "4" "0.0247093052498514" "protein biosynthesis" "TAIR-GO" "24" "0" "4" "0" "methionine and S-adenosylmethionine synthesis" "AraCyc" "24" "5.58688251821173e-13" "3" "0.00280663957194683" "channel / pore class transport" "FunCat" "24" "7.88343149152687e-08" "3" "0.0784975211291908" "cellulose biosynthesis" "TAIR-GO" "22" "6.18321661051783e-05" "4" "0.0164117624597056" "indoleacetic acid biosynthesis" "TAIR-GO" "22" "1.86660084317621e-08" "3" "0.0022969731439255" "photosynthetic electron transport" "TAIR-GO" "22" "3.38288714816020e-08" "3" "0.00606795036568349" "protein folding" "TAIR-GO" "22" "0" "3" "0" "glycine degradation I" "AraCyc" "22" "1.19097714148218e-11" "5" "0.000208058044426683" "starch biosynthesis" "AraCyc" "22" "0" "3" "0" "Pentose and glucuronate interconversions" "KEGG" "22" "0.000111499764738470" "3" "0.0503674609365837" "electron / hydrogen transport " "FunCat" "21" "2.88029221014704e-11" "3" "0.00195249447340697" "MEP (methylerythritol P) pathway, plastids" "LitPath" "21" "5.49891181187969e-05" "3" "0.0135792082862769" "ATP synthase components" "BioPath" "20" "0.0239669692347888" "3" "0.0659750257459534" "Delta-pH pathway" "BioPath" "20" "1.36372852546298e-12" "2" "0.00438770844106548" "Oxygen-evolving enhancer protein" "BioPath" "20" "8.07606605237961e-08" "2" "0.0338426406730894" "photosystem I reaction center" "BioPath" "20" "2.28996617078713e-05" "4" "0.00823414026096787" "Plastocyanin" "BioPath" "20" "0" "2" "0" "aging" "TAIR-GO" "20" "0.000422517141711823" "2" "0.107859255354919" "chloroplast thylakoid membrane protein import" "TAIR-GO" "20" "3.34018487950853e-08" "2" "0.0123085980933521" "methionine biosynthesis" "TAIR-GO" "20" "1.7126014694085e-08" "2" "0.0123085980933521" "photosynthetic water oxidation" "TAIR-GO" "20" "0" "2" "0" "ammonia assimilation cycle" "AraCyc" "20" "0.000556839507431248" "2" "0.0889779179195696" "glucose and glucose-1-phosphate degradation" "AraCyc" "20" "1.98119959887190e-05" "3" "0.0660968903940127" "glutamine biosynthesis I" "AraCyc" "20" "8.34838736193752e-05" "2" "0.0446985771206841" "homocysteine and cysteine interconversion" "AraCyc" "20" "3.6181749559365e-05" "2" "0.115891413356119" "methionine biosynthesis II" "AraCyc" "20" "0.00352241329933253" "2" "0.210292676278814" "octane oxidation" "AraCyc" "20" "0.0318828417441427" "2" "0.115891413356119" "phospholipid desaturation pathway" "AraCyc" "20" "1.71318184336572e-06" "2" "0.0154412441339057" "UDP-N-acetylglucosamine biosynthesis" "AraCyc" "20" "4.92351202097924e-07" "2" "0.0446985771206841" "nucleotide metabolism" "FunCat" "20" "0" "5" "0" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradatio" "KEGG" "20" "1.49026282461652e-06" "2" "0.0489576937195985" "1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation" "KEGG" "20" "9.8626103594711e-09" "2" "0.0145299547743007" "Androgen and estrogen metabolism" "KEGG" "20" "2.65408366381481e-08" "2" "0.0236170523214028" "Benzoate degradation via hydroxylation" "KEGG" "20" "0.000273608928022043" "2" "0.0650413471104451" "Reductive carboxylate cycle (CO2 fixation)" "KEGG" "20" "0.0476225061533782" "4" "0.0382849967892288" "mevalonate pathway, cytosol" "LitPath" "20" "0.00763647516352628" "2" "0.125859767349877" "hypersensitive response" "TAIR-GO" "19" "0.000133420137345179" "2" "0.0485841206693007" "starch biosynthesis" "TAIR-GO" "19" "0.00414234121254401" "2" "0.0756645531084724" "cysteine biosynthesis II" "AraCyc" "19" "0.00776793216447596" "5" "0.0552783506354246" "serine biosynthesis" "AraCyc" "19" "8.61959054700231e-09" "5" "2.16133707965099e-05" "Fluorene degradation" "KEGG" "19" "0.0247224358485046" "2" "0.172669842436883" "Translation (chloroplast)" "BioPath" "18" "0.000291409363916601" "3" "0.0165241148849196" "carotenoid biosynthesis" "TAIR-GO" "18" "0.0129928487361421" "2" "0.107859255354919" "nonphotochemical quenching" "TAIR-GO" "18" "0" "2" "0" "photosynthesis light harvesting" "TAIR-GO" "18" "0.00192273795652907" "2" "0.107859255354919" "primary cell wall biosynthesis (sensu Magnoliophyta)" "TAIR-GO" "18" "2.65637265061704e-11" "3" "0.000522075691953829" "regulation of transcription" "TAIR-GO" "18" "0" "2" "0" "IAA biosynthesis I" "AraCyc" "18" "0.00172334433159553" "2" "0.0889779179195696" "oxidative branch of the pentose phosphate pathway" "AraCyc" "18" "0.000100557699486716" "5" "0.00274426851287580" "TCA cycle variation II" "AraCyc" "18" "0.02634434507218" "4" "0.0491723907971979" "Tetracycline biosynthesis" "KEGG" "18" "5.91358621083336e-09" "2" "0.00337263789734113" "photosystem II assembly" "TAIR-GO" "17" "7.08582642270992e-12" "2" "0.00346870629230341" "photosystem II stabilization" "TAIR-GO" "17" "0" "2" "0" "Membrane Transport" "KEGG" "17" "0.0215908442201801" "3" "0.158840784925815" "Other ion-coupled transporters" "KEGG" "17" "0.000150110811059142" "3" "0.0230400592998532" "Early light-inducible proteins" "BioPath" "16" "0.0115301214796068" "2" "0.0918334618728698" "acetyl-CoA biosynthesis" "TAIR-GO" "16" "4.48606795412408e-05" "2" "0.0273260355174921" "cytochrome b6f complex" "TAIR-GO" "16" "0.000203524500681314" "2" "0.0485841206693007" "magnesium chelatase complex" "TAIR-GO" "16" "0" "2" "0" "pectin biosynthesis" "TAIR-GO" "16" "5.37139153901648e-14" "2" "0.00346870629230341" "PSII associated light-harvesting complex II" "TAIR-GO" "16" "0" "2" "0" "lipid biosynthesis" "TAIR-GO" "14" "0.0133621375966366" "2" "0.0273260355174921" "photosystem II antenna complex" "TAIR-GO" "14" "1.31491236438958e-08" "2" "0.00346870629230341" "plastid organization and biogenesis" "TAIR-GO" "14" "2.39948532442146e-06" "2" "0.0123085980933521" "cyanate degradation" "AraCyc" "14" "2.56258504050505e-05" "3" "0.0660968903940127" "isopentenyl diphosphate biosynthesis -- mevalonate-independent" "AraCyc" "14" "0.000777256675773161" "2" "0.0280758486958646" "non-oxidative branch of the pentose phosphate pathway" "AraCyc" "14" "0.00726550695598106" "3" "0.0660968903940127" "accessory proteins of electron transport and membrane-associated energy conservation" "FunCat" "14" "6.98378427725277e-11" "2" "0.00140636680497446" "electron transport and membrane-associated energy conservation " "FunCat" "14" "0.000948670188640953" "2" "0.0705418273673808" "metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "14" "0" "2" "0" "One carbon pool by folate" "KEGG" "14" "0.0065542424301135" "3" "0.0398963666300512" "phosphate transport" "TAIR-GO" "13" "1.55054573813640e-05" "2" "0.0123085980933521" "response to pathogenic bacteria" "TAIR-GO" "13" "0.00372243165332921" "2" "0.0273260355174921" "glutamate degradation I" "AraCyc" "13" "0.0058694612711507" "2" "0.065109586152906" "ClpP protease complex " "BioPath" "12" "0.015148725090603" "3" "0.0452961884282512" "Plastoquinone biosynthesis" "BioPath" "12" "0" "2" "0" "chloroplastic endopeptidase Clp complex" "TAIR-GO" "12" "0.000224510446366159" "3" "0.0124768774170719" "glycine decarboxylation via glycine cleavage system" "TAIR-GO" "12" "0" "2" "0" "GDP-D-rhamnose biosynthesis" "AraCyc" "12" "0.0493926687471662" "2" "0.177016725690014" "accessory proteins of photosynthetic electron transport " "FunCat" "12" "0" "2" "0" "calcium-mediated signaling" "TAIR-GO" "11" "2.98956939886296e-06" "2" "0.00346870629230341" "detoxification" "FunCat" "11" "0" "2" "0" "brassinosteroid biosynthesis" "BioPath" "10" "0.0218488965413721" "1" "0.0717841260889326" "Other cell wall metabolism related enzymes" "BioPath" "10" "0.000457123163384452" "1" "0.0268531809903545" "Regulatory enzymes" "BioPath" "10" "0.0218488965413721" "1" "0.0717841260889326" "Transcriptional regulators (chloroplast)" "BioPath" "10" "0.000457123163384452" "1" "0.0268531809903545" "biotin binding" "TAIR-GO" "10" "0.000100956481365963" "1" "0.0229801791865101" "cell communication" "TAIR-GO" "10" "0" "1" "0" "chlorophyll catabolism" "TAIR-GO" "10" "0.00654911112042975" "1" "0.0620031249749234" "chloroplast ATP synthase complex" "TAIR-GO" "10" "0.000100956481365963" "1" "0.0229801791865101" "chloroplast organization and biogenesis" "TAIR-GO" "10" "0.00354554745864025" "1" "0.227626033789094" "chloroplast-nucleus signaling pathway" "TAIR-GO" "10" "0.00654911112042975" "1" "0.0620031249749234" "citrate lyase complex" "TAIR-GO" "10" "0.000100956481365963" "1" "0.0229801791865101" "cutin biosynthesis" "TAIR-GO" "10" "0" "1" "0" "cysteine biosynthesis" "TAIR-GO" "10" "0.00654911112042975" "1" "0.0620031249749234" "D-xylose metabolism" "TAIR-GO" "10" "0.00354554745864025" "1" "0.111697651856495" "enzyme binding" "TAIR-GO" "10" "0" "1" "0" "extrinsic to photosynthetic water oxidation" "TAIR-GO" "10" "0" "1" "0" "glucosinolate catabolism" "TAIR-GO" "10" "5.34595282920084e-05" "1" "0.0229801791865101" "glutathione metabolism" "TAIR-GO" "10" "0" "1" "0" "glycine catabolism" "TAIR-GO" "10" "0" "1" "0" "heme biosynthesis" "TAIR-GO" "10" "0" "1" "0" "leaf development" "TAIR-GO" "10" "0" "1" "0" "lipid metabolism" "TAIR-GO" "10" "0.00654911112042975" "1" "0.0620031249749234" "methionine biosynthesis from L-homoserine via cystathione" "TAIR-GO" "10" "0" "1" "0" "methylation-dependent chromatin silencing" "TAIR-GO" "10" "0" "1" "0" "photoinhibition" "TAIR-GO" "10" "0.00252741677011108" "1" "0.0620031249749234" "photosynthetic electron transport in cytochrome b6/f" "TAIR-GO" "10" "5.83022626149705e-07" "1" "0.0229801791865101" "plastoquinone biosynthesis" "TAIR-GO" "10" "0.000100956481365963" "1" "0.0229801791865101" "positive regulation of cell size" "TAIR-GO" "10" "0" "1" "0" "positive regulation of flower development" "TAIR-GO" "10" "5.04160510001998e-06" "1" "0.0229801791865101" "positive regulation of transcription" "TAIR-GO" "10" "0.00486678414770075" "1" "0.0620031249749234" "posttranscriptional gene silencing" "TAIR-GO" "10" "0" "1" "0" "protein binding" "TAIR-GO" "10" "0.0143921215279165" "1" "0.167945396082496" "protein complex assembly" "TAIR-GO" "10" "0" "1" "0" "regulation of embryonic development" "TAIR-GO" "10" "0.000784567408204272" "1" "0.0620031249749234" "response to chemical substance" "TAIR-GO" "10" "0" "1" "0" "response to gravity" "TAIR-GO" "10" "0" "1" "0" "response to oxidative stress" "TAIR-GO" "10" "0.00252741677011108" "1" "0.167945396082496" "response to toxin" "TAIR-GO" "10" "0" "1" "0" "tetrapyrrole binding" "TAIR-GO" "10" "0" "1" "0" "thylakoid membrane organization and biogenesis" "TAIR-GO" "10" "0" "1" "0" "xenobiotic catabolism" "TAIR-GO" "10" "0" "1" "0" "ascorbate biosynthesis" "AraCyc" "10" "0.0419216610726248" "1" "0.307355445046279" "glycosylglyceride desaturation pathway" "AraCyc" "10" "0.0119445642315017" "1" "0.0770137121499041" "peptidoglycan biosynthesis" "AraCyc" "10" "0.0076389367740291" "1" "0.258827105684788" "plastoquinone biosynthesis" "AraCyc" "10" "0.00102059760043697" "1" "0.0770137121499041" "pyridoxal 5'-phosphate biosynthesis" "AraCyc" "10" "0.000205576900870491" "1" "0.118062024160570" "thiamine biosynthesis" "AraCyc" "10" "0.00197469845144069" "1" "0.163055111892922" "biosynthesis of glycosides" "FunCat" "10" "4.42321487156101e-06" "1" "0.034940940792555" "degradation of lipids, fatty acids and isoprenoids" "FunCat" "10" "0" "1" "0" "detoxification by modification" "FunCat" "10" "4.42321487156101e-06" "1" "0.034940940792555" "fatty acid biosynthesis" "FunCat" "10" "3.74549843066613e-09" "1" "0.0125845581341680" "ionic homeostasis " "FunCat" "10" "0" "1" "0" "lipid transport " "FunCat" "10" "0.00153224929167601" "2" "0.0511761758291432" "lipid, fatty acid and isoprenoid metabolism of energy reserves (e.g. glycogen, trehalose)" "FunCat" "10" "0" "1" "0" "metabolismn of primary metabolic sugars derivatives " "FunCat" "10" "4.42321487156101e-06" "1" "0.034940940792555" "Peptidoglycan biosynthesis" "KEGG" "10" "0.0115197302559166" "1" "0.0771568132239209" "chlorophyll a biosynthesis" "LitPath" "10" "0" "1" "0" "chlorophyll catabolism" "LitPath" "10" "0.00149668543543790" "1" "0.0371105875020183" "phytol biosynthesis" "LitPath" "10" "0" "1" "0" "carbohydrate biosynthesis" "TAIR-GO" "9" "0" "1" "0" "DNA methylation" "TAIR-GO" "9" "0" "1" "0" "glutamate metabolism" "TAIR-GO" "9" "0" "1" "0" "L-serine biosynthesis" "TAIR-GO" "9" "4.78244694185344e-05" "1" "0.0229801791865101" "nitrogen compound metabolism" "TAIR-GO" "9" "0.0046109162162535" "1" "0.0620031249749234" "nuclear heterochromatin" "TAIR-GO" "9" "0" "1" "0" "RNA interference, production of siRNA" "TAIR-GO" "9" "0" "1" "0" "signal transduction" "TAIR-GO" "9" "0" "1" "0" "sphingosine biosynthesis" "TAIR-GO" "9" "0" "1" "0" "sucrose biosynthesis" "TAIR-GO" "9" "0" "1" "0" "alanine degradation III" "AraCyc" "9" "9.38848577092853e-05" "1" "0.0419061399778319" "Glycosphingolipid metabolism" "KEGG" "9" "0.00829923068202405" "1" "0.178178251754568" "Taurine and hypotaurine metabolism" "KEGG" "9" "0.00412570758136766" "1" "0.0771568132239209" "biosynthesis of extracellular lipids" "LitPath" "9" "0" "1" "0" "psbP family of thylakoid proteins" "BioPath" "8" "0.0316465618920971" "2" "0.0595580274494626" "fatty acid desaturation" "TAIR-GO" "8" "0.0153571497080560" "1" "0.0620031249749234" "Golgi organization and biogenesis" "TAIR-GO" "8" "0" "2" "0" "nitrate assimilation" "TAIR-GO" "8" "0.0153571497080560" "1" "0.0620031249749234" "photosynthetic electron transport in photosystem I" "TAIR-GO" "8" "0.0153571497080560" "1" "0.0620031249749234" "photosystem I (sensu Viridiplantae)" "TAIR-GO" "8" "0" "1" "0" "photosystem I antenna complex" "TAIR-GO" "8" "0" "1" "0" "response to high light intensity" "TAIR-GO" "8" "0.020102686852833" "1" "0.0620031249749234" "response to reactive oxygen species" "TAIR-GO" "8" "0" "1" "0" "transcription factor binding" "TAIR-GO" "8" "0" "1" "0" "epicuticular wax biosynthesis" "AraCyc" "8" "0.00301300238147104" "1" "0.0419061399778319" "C-compound and carbohydrate transport " "FunCat" "8" "1.93294473819062e-05" "2" "0.00515517237763043" "isopentenyl diphosphate biosynthesis, mevalonate-independent pathway" "TAIR-GO" "7" "0" "1" "0"