Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)


CYP86C1 (At1g24540) save all data as Tab Delimited Table








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Pathways co-expressed in the 2 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes





Cell Wall Carbohydrate Metabolism BioPath 26 7






























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.

































For more information on how these pathway maps were generated please read the methods page
















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP86C1 (At1g24540)





max. difference between log2-ratios: 6.50









max. difference between log2-ratios excluding lowest and highest 5%: 4.50









Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap




Flavonoid and anthocyanin metabolism BioPath 26 0.000 3 0.000
Phenylpropanoid Metabolism BioPath 26 0.000 3 0.026
Cell Wall Carbohydrate Metabolism BioPath 18 0.001 5 0.019
proanthocyanidin biosynthesis TAIR-GO 18 0.000 2 0.000
mono-/sesqui-/di-terpene biosynthesis LitPath 18 0.000 3 0.001
terpenoid metabolism LitPath 18 0.000 3 0.001
pectin metabolism BioPath 12 0.000 4 0.002
gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.000
anthocyanin biosynthesis AraCyc 10 0.000 1 0.000
gibberellin biosynthesis AraCyc 10 0.000 1 0.000








Diterpenoid biosynthesis KEGG 10 0.000 1 0.001








Miscellaneous acyl lipid metabolism AcylLipid 10 0.000 5 0.000








flavonoid, anthocyanin, and proanthocyanidin biosynthesis LitPath 10 0.000 1 0.010








Gibberellin metabolism LitPath 10 0.000 1 0.024








giberelin biosynthesis LitPath 10 0.000 1 0.014








proanthocyanidin biosynthesis LitPath 10 0.000 1 0.010








flavonoid biosynthesis TAIR-GO 8 0.000 1 0.000








mRNA synthesis FunCat 8 0.000 1 0.016








RNA synthesis FunCat 8 0.000 1 0.016








transcription FunCat 8 0.000 1 0.004








transcriptional control FunCat 8 0.000 1 0.003






































Pathways co-expressed in the Stress data set (with more than 6 annotation points)
CYP86C1 (At1g24540)





max. difference between log2-ratios: 0.0









max. difference between log2-ratios excluding lowest and highest 5%: 0.0





















this gene is not detectably differentially expressed in this data set






































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP86C1 (At1g24540)





max. difference between log2-ratios: 0.0









max. difference between log2-ratios excluding lowest and highest 5%: 0.0





















this gene is not detectably differentially expressed in this data set





















































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP86C1 (At1g24540)





max. difference between log2-ratios: *









max. difference between log2-ratios excluding lowest and highest 5%: *









Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap




Cell Wall Carbohydrate Metabolism BioPath 8 0.000 2 0.007





















































page created by Juergen Ehlting 03/06/06