"Pathway"	"Pathway.source"	"V3"	"V4"	"V5"	"V6"
"IN TWO DATA SETS"		"sum.of.scores"	"sum.of.genes"		
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	90	33		
"Cell Wall Carbohydrate Metabolism"	"BioPath"	89	23		
"pectin metabolism"	"BioPath"	79	20		
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	48	12		
"sexual reproduction"	"TAIR-GO"	40	10		
"fatty acid metabolism"	"TAIR-GO"	34	6		
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	34	6		
"Biosynthesis of prenyl diphosphates"	"BioPath"	26	5		
"gibberellic acid catabolism"	"TAIR-GO"	20	2		
"Diterpenoid biosynthesis"	"KEGG"	20	2		
"Gibberellin metabolism"	"LitPath"	20	2		
"giberelin catabolism"	"LitPath"	20	2		
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	20	2		
"triacylglycerol degradation"	"AraCyc"	18	8		
"lignin biosynthesis"	"AraCyc"	18	8		
"cuticle biosynthesis"	"TAIR-GO"	16	4		
"long-chain fatty acid metabolism"	"TAIR-GO"	16	4		
"very-long-chain fatty acid metabolism"	"TAIR-GO"	16	4		
"suberin biosynthesis"	"AraCyc"	14	6		
"ORGAN DATA SET"	"quantDE"	3.48512	"maxDE"	6.8138567	"ORGAN DATA SET"
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	44	0.0000000000305304916235346	16	0.0000603485253449886
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	33	0.00000000000105073144648927	7	0.00744536805103227
"fatty acid metabolism"	"TAIR-GO"	26	7.9068569880912E-030	4	0.00000226776639209685
"sexual reproduction"	"TAIR-GO"	20	0	5	0
"Biosynthesis of prenyl diphosphates"	"BioPath"	14	0.000000000053372584238873	3	0.000550323276007934
"Cell Wall Carbohydrate Metabolism"	"BioPath"	14	0.00641082512700632	4	0.175910312168848
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	14	0.00000000807784610836132	3	0.00215154668342568
"pectin metabolism"	"BioPath"	14	0.00000000280411993681642	4	0.00932871362379861
"gibberellic acid catabolism"	"TAIR-GO"	10	6.03155165516637E-015	1	0.000872685460777355
"triacylglycerol degradation"	"AraCyc"	10	0.0000000000000176373999956263	4	0.00000954615433508932
"Diterpenoid biosynthesis"	"KEGG"	10	0.0000000000000403634617714549	1	0.00089459342433358
"Gibberellin metabolism"	"LitPath"	10	0.0000000248454587531704	1	0.0191708223427874
"giberelin catabolism"	"LitPath"	10	2.14332964204301E-018	1	0.000156398660184811
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	10	0.0000000076953850512381	1	0.0150077942910326
"lignin biosynthesis"	"AraCyc"	9	0.00000000081347096318274	4	0.00000373785853963352
"Phenylpropanoid pathway"	"LitPath"	9	0.00318295399512566	4	0.00163407377509724
"cuticle biosynthesis"	"TAIR-GO"	8	0.000000000594611620468844	2	0.000160249721638413
"long-chain fatty acid metabolism"	"TAIR-GO"	8	0.000000031782378382732	2	0.000480340474391857
"very-long-chain fatty acid metabolism"	"TAIR-GO"	8	0.00000000526144139355386	2	0.000325375825427192
"C-compound and carbohydrate utilization "	"FunCat"	8	6.52356322467652E-018	2	0
"suberin biosynthesis"	"AraCyc"	7	0.0000000017406272815077	3	0.0000024286056392371
"STRESS DATA SET"	"quantDE"	1.000334	"maxDE"	2.92471	"STRESS DATA SET"
"HORMONE DATA SET"	"quantDE"	1.471289	"maxDE"	2.8187862	"HORMONE DATA SET"
"MUTANT DATA SET"	"quantDE"	1.523546	"maxDE"	5.970820145	"MUTANT DATA SET"
"Cell Wall Carbohydrate Metabolism"	"BioPath"	81	6.30019756950126E-024	19	0.00000844575632478886
"pectin metabolism"	"BioPath"	65	1.25520180103211E-045	16	0.000000004504320100049
"Miscellaneous acyl lipid metabolism"	"AcylLipid"	46	0.0000000000120736318938886	17	0.000287802497263915
"Starch and sucrose metabolism"	"KEGG"	33	3.77726390623499E-017	6	0.0000435986713889526
"C-compound and carbohydrate metabolism"	"FunCat"	32	0.00348837021167813	10	0.0183911206972543
"Glycan Biosynthesis and Metabolism"	"KEGG"	26	6.80168820025126E-015	4	0.0012521125053152
"Isoprenoid Biosynthesis in the Cytosol and in Mitochondria"	"BioPath"	20	0.0000283304520130483	3	0.0446788010125974
"sexual reproduction"	"TAIR-GO"	20	0	5	0
"biogenesis of cell wall"	"FunCat"	18	0.000000128672076938844	6	0.000301091755883179
"glycolysis and gluconeogenesis"	"FunCat"	16	0.017165005454332	4	0.0950091938871551
"Fatty acid elongation and wax and cutin metabolism"	"AcylLipid"	15	0.0280356471027576	5	0.149322169089537
"Glutamate/glutamine from nitrogen fixation"	"BioPath"	14	0.00000000032630922479633	2	0.00231141636326406
"assimilation of ammonia, metabolism of the glutamate group"	"FunCat"	14	0.0000000249754384770987	2	0.00881142480657332
"nitrogen and sulfur metabolism"	"FunCat"	14	0.0000000354796590499297	2	0.00766561236842906
"Glutamate metabolism"	"KEGG"	14	0.00000664150754244716	2	0.0180904282144182
"Glycerolipid metabolism"	"KEGG"	14	0.000000164403850939045	2	0.00876441783801562
"Nitrogen metabolism"	"KEGG"	14	0.00000144428880860913	2	0.00804111129275283
"Oxidative phosphorylation"	"KEGG"	14	0.00000559033872782796	3	0.0146344089595602
"Biosynthesis of prenyl diphosphates"	"BioPath"	12	0.00268503638921802	2	0.0670349689510727
"lactose degradation IV"	"AraCyc"	12	9.93668180920346E-019	3	0.00000126597022441036
"Galactose metabolism"	"KEGG"	12	0.00000125843583130192	2	0.0073544751373487
"isoprenoid biosynthesis "	"FunCat"	11	0.0104217672836224	3	0.0370327631799069
"lipid, fatty acid and isoprenoid biosynthesis "	"FunCat"	11	0.00373566113394715	3	0.023505228036836
"cellulose biosynthesis"	"BioPath"	10	0.00286062093302678	2	0.0707627104450377
"gibberellic acid catabolism"	"TAIR-GO"	10	0.0000000000000224479117151803	1	0.00117527101360827
"ammonia assimilation cycle"	"AraCyc"	10	0.000000000331158482711234	1	0.00675925774023178
"glutamine biosynthesis I"	"AraCyc"	10	0.0000000000841255774527654	1	0.00401595963949199
"nitrate assimilation pathway"	"AraCyc"	10	0.00000000320126453963007	1	0.0083719808711951
"polyisoprenoid biosynthesis"	"AraCyc"	10	0.000000000826489905113152	2	0.000898125260793712
"lipid, fatty acid and isoprenoid metabolism"	"FunCat"	10	0.00234218599963922	4	0.00141879592586215
"transport "	"FunCat"	10	4.60010208269658E-016	3	0
"Diterpenoid biosynthesis"	"KEGG"	10	0.000000596549829428886	1	0.010213075527222
"Fructose and mannose metabolism"	"KEGG"	10	0.00077831644580866	2	0.0216512868776716
"Peptidoglycan biosynthesis"	"KEGG"	10	0.00000000000601029010246817	1	0.00164099800771775
"Gibberellin metabolism"	"LitPath"	10	0.00000409345830352031	1	0.0336218561732317
"giberelin catabolism"	"LitPath"	10	6.47914442811638E-016	1	0.000286730877005487
"prenyl diphosphate (GPP,FPP, GGPP) biosynthesis"	"LitPath"	10	0.00000136621772777428	1	0.0264756546718478
"cytokinin catabolism"	"TAIR-GO"	9	2.88841914152977E-015	1	0.00117527101360827
"cytokinins degradation"	"AraCyc"	9	0.0000000000000146693142915454	1	0.000595231412587988
"lignin biosynthesis"	"AraCyc"	9	0.000525549678735663	4	0.000352261204036573
"hemicellulose biosynthesis"	"BioPath"	8	0.0000943806265351989	1	0.0449136184138829
"ubiquinone biosynthesis"	"BioPath"	8	0.0000000000308671619185205	1	0.00264934018728171
"cell wall organization and biogenesis (sensu Magnoliophyta)"	"TAIR-GO"	8	3.23825597726253E-015	1	0.00035742174068742
"cuticle biosynthesis"	"TAIR-GO"	8	0.0000000016835454076416	2	0.000252049658571522
"fatty acid metabolism"	"TAIR-GO"	8	0.00000717975877113464	2	0.00239690490287083
"long-chain fatty acid metabolism"	"TAIR-GO"	8	0.0000000875314498908483	2	0.000751177603951617
"very-long-chain fatty acid metabolism"	"TAIR-GO"	8	0.000000014697369972588	2	0.000510006932838042
"biosynthesis of proto- and siroheme"	"AraCyc"	8	0.000526801874772287	1	0.115363805680306
"mevalonate pathway"	"AraCyc"	8	0.00000446185128713776	1	0.0293066514702813
"mixed acid fermentation"	"AraCyc"	8	0.000100189639040302	2	0.0130645785755539
"triacylglycerol degradation"	"AraCyc"	8	0.0000110464885412009	4	0.000844081692459802
"C-compound, carbohydrate catabolism"	"FunCat"	8	0.000718830877566823	2	0.0526253988690933
"metabolism of vitamins, cofactors, and prosthetic groups"	"FunCat"	8	0.00000000000281933658215277	1	0.00250266669264832
"transport ATPases"	"FunCat"	8	0.00109065666089346	2	0.0279333276961465
"transport facilitation"	"FunCat"	8	0	2	0.00000867081203738821
"ATP synthesis"	"KEGG"	8	0.001213320620913	2	0.0148853801731274
"Ubiquinone biosynthesis"	"KEGG"	8	0.00000000706536914041408	1	0.00858238043464712
"Synthesis and storage of oil"	"AcylLipid"	8	0.00027378514701613	3	0.0120082008977488
"ubiquinone biosynthesis"	"LitPath"	8	0.0000000000106207271446627	1	0.00168667189796663
"pentacyclic triterpenoid biosynthesis"	"TAIR-GO"	7	0.0000000201200421231378	1	0.00322421676476631
"suberin biosynthesis"	"AraCyc"	7	0.0001167353093631	3	0.0000984299705769385
"triterpene biosynthesis"	"LitPath"	7	0.00000745092026391542	1	0.0119212713094808